Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:118619092-119090045

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfap57 4 118554550 to 118620766 66216 - protein coding gene cilia and flagella associated protein 57
Cpgi14690 4 118620633 to 118621569 936 CpG island CpG island 14690
Tssr43067 4 118620727 to 118620762 35 - TSS region transcription start site region 43067
Tssr43068 4 118620763 to 118620792 29 - TSS region transcription start site region 43068
Tssr43069 4 118620798 to 118620806 8 - TSS region transcription start site region 43069
Ebna1bp2 4 118620799 to 118627776 6977 + protein coding gene EBNA1 binding protein 2
Tssr38671 4 118620813 to 118620899 86 + TSS region transcription start site region 38671
Tssr38672 4 118621213 to 118621239 26 + TSS region transcription start site region 38672
Tssr38673 4 118625523 to 118625525 2 + TSS region transcription start site region 38673
D4Ertd617e 4 118626404 to 118631915 5511 + lncRNA gene DNA segment, Chr 4, ERATO Doi 617, expressed
Gm12853 4 118632847 to 118636062 3215 - antisense lncRNA gene predicted gene 12853
Tssr43070 4 118636345 to 118636359 14 - TSS region transcription start site region 43070
Tssr43071 4 118636361 to 118636372 11 - TSS region transcription start site region 43071
Olfr62 4 118665519 to 118666466 947 + protein coding gene olfactory receptor 62
Olfr1343-ps1 4 118672609 to 118673522 913 - pseudogene olfactory receptor 1343, pseudogene 1
Olfr1342 4 118689152 to 118693034 3882 - protein coding gene olfactory receptor 1342
Olfr1341 4 118709409 to 118710347 938 + protein coding gene olfactory receptor 1341
Gm21942 4 118722776 to 118725477 2701 - pseudogene predicted gene, 21942
Olfr1340 4 118725722 to 118727196 1474 + protein coding gene olfactory receptor 1340
Olfr1339 4 118734531 to 118735478 947 + protein coding gene olfactory receptor 1339
Tssr38674 4 118741647 to 118741668 21 + TSS region transcription start site region 38674
Olfr1338 4 118753189 to 118756958 3769 - protein coding gene olfactory receptor 1338
Olfr1337 4 118781636 to 118782586 950 - protein coding gene olfactory receptor 1337
Gm12855 4 118791081 to 118791593 512 - pseudogene predicted gene 12855
Tssr43072 4 118791601 to 118791609 8 - TSS region transcription start site region 43072
Olfr1335 4 118808855 to 118809862 1007 - protein coding gene olfactory receptor 1335
Olfr1333 4 118829485 to 118830438 953 - protein coding gene olfactory receptor 1333
Olfr1332-ps1 4 118854092 to 118855045 953 + pseudogene olfactory receptor 1332, pseudogene 1
Olfr1331 4 118868783 to 118869736 953 + protein coding gene olfactory receptor 1331
Tssr38675 4 118875267 to 118875271 4 + TSS region transcription start site region 38675
Olfr1330 4 118893085 to 118894032 947 + protein coding gene olfactory receptor 1330
Olfr1329 4 118916524 to 118917465 941 - protein coding gene olfactory receptor 1329
Olfr1328 4 118933899 to 118934840 941 - protein coding gene olfactory receptor 1328
Gm12856 4 118942063 to 118943352 1289 - pseudogene predicted gene 12856
Gm12863 4 118954274 to 118954919 645 - antisense lncRNA gene predicted gene 12863
Tssr43073 4 118954824 to 118954838 14 - TSS region transcription start site region 43073
Tssr43074 4 118954847 to 118954858 11 - TSS region transcription start site region 43074
Tssr38676 4 118961599 to 118961612 13 + TSS region transcription start site region 38676
Tssr38677 4 118961691 to 118961698 7 + TSS region transcription start site region 38677
Tssr38678 4 118961725 to 118961735 10 + TSS region transcription start site region 38678
Tssr38679 4 118961866 to 118961871 5 + TSS region transcription start site region 38679
Tssr38680 4 118961942 to 118961961 19 + TSS region transcription start site region 38680
Lao1 4 118961967 to 118968910 6943 + protein coding gene L-amino acid oxidase 1
Tssr38681 4 118961984 to 118962001 17 + TSS region transcription start site region 38681
Tssr38682 4 118963790 to 118963796 6 + TSS region transcription start site region 38682
Tssr38683 4 118964177 to 118964181 4 + TSS region transcription start site region 38683
Tssr38684 4 118964192 to 118964200 8 + TSS region transcription start site region 38684
Tssr38685 4 118964208 to 118964219 11 + TSS region transcription start site region 38685
Tssr38686 4 118964220 to 118964223 3 + TSS region transcription start site region 38686
Tssr38687 4 118965326 to 118965337 11 + TSS region transcription start site region 38687
Tssr38688 4 118967833 to 118967838 5 + TSS region transcription start site region 38688
Tssr43075 4 118967993 to 118967998 5 - TSS region transcription start site region 43075
Tssr38689 4 118968092 to 118968100 8 + TSS region transcription start site region 38689
Tssr38690 4 118968156 to 118968169 13 + TSS region transcription start site region 38690
Tssr43076 4 118968618 to 118968632 14 - TSS region transcription start site region 43076
Gm12861 4 118971297 to 118999458 28161 + unclassified non-coding RNA gene predicted gene 12861
Gm24352 4 118980318 to 118980442 124 + snoRNA gene predicted gene, 24352
Gm12865 4 118984058 to 118997198 13140 - lincRNA gene predicted gene 12865
Tssr38691 4 118986942 to 118986944 2 + TSS region transcription start site region 38691
Gm12864 4 118987014 to 118988019 1005 + pseudogene predicted gene 12864
Tssr38692 4 118987470 to 118987471 1 + TSS region transcription start site region 38692
Gm12862 4 118999660 to 119000485 825 - lincRNA gene predicted gene 12862
Svwq1 4 119000000 to 90000000 -29000000 QTL seminal vesicle weight QTL 1
Tssr38693 4 119026797 to 119026811 14 + TSS region transcription start site region 38693
Lincred2 4 119050708 to 119061964 11256 + lncRNA gene long intergenic non-protein coding RNA of erythroid differentiation 2
Gm12866 4 119054790 to 119069111 14321 - lincRNA gene predicted gene 12866
Tssr38694 4 119072078 to 119072089 11 + TSS region transcription start site region 38694
Tssr43077 4 119072924 to 119072941 17 - TSS region transcription start site region 43077
Tssr43078 4 119072958 to 119072967 9 - TSS region transcription start site region 43078
Gm35510 4 119073001 to 119084352 11351 + lncRNA gene predicted gene, 35510