Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:118574178-119774221

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246 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfap57 4 118554550 to 118620766 66216 - protein coding gene cilia and flagella associated protein 57
Cpgi14690 4 118620633 to 118621569 936 CpG island CpG island 14690
Tssr43067 4 118620727 to 118620762 35 - TSS region transcription start site region 43067
Tssr43068 4 118620763 to 118620792 29 - TSS region transcription start site region 43068
Tssr43069 4 118620798 to 118620806 8 - TSS region transcription start site region 43069
Ebna1bp2 4 118620799 to 118627776 6977 + protein coding gene EBNA1 binding protein 2
Tssr38671 4 118620813 to 118620899 86 + TSS region transcription start site region 38671
Tssr38672 4 118621213 to 118621239 26 + TSS region transcription start site region 38672
Tssr38673 4 118625523 to 118625525 2 + TSS region transcription start site region 38673
D4Ertd617e 4 118626404 to 118631915 5511 + lncRNA gene DNA segment, Chr 4, ERATO Doi 617, expressed
Gm12853 4 118632847 to 118636062 3215 - antisense lncRNA gene predicted gene 12853
Tssr43070 4 118636345 to 118636359 14 - TSS region transcription start site region 43070
Tssr43071 4 118636361 to 118636372 11 - TSS region transcription start site region 43071
Olfr62 4 118665519 to 118666466 947 + protein coding gene olfactory receptor 62
Olfr1343-ps1 4 118672609 to 118673522 913 - pseudogene olfactory receptor 1343, pseudogene 1
Olfr1342 4 118689152 to 118693034 3882 - protein coding gene olfactory receptor 1342
Olfr1341 4 118709409 to 118710347 938 + protein coding gene olfactory receptor 1341
Gm21942 4 118722776 to 118725477 2701 - pseudogene predicted gene, 21942
Olfr1340 4 118725722 to 118727196 1474 + protein coding gene olfactory receptor 1340
Olfr1339 4 118734531 to 118735478 947 + protein coding gene olfactory receptor 1339
Tssr38674 4 118741647 to 118741668 21 + TSS region transcription start site region 38674
Olfr1338 4 118753189 to 118756958 3769 - protein coding gene olfactory receptor 1338
Olfr1337 4 118781636 to 118782586 950 - protein coding gene olfactory receptor 1337
Gm12855 4 118791081 to 118791593 512 - pseudogene predicted gene 12855
Tssr43072 4 118791601 to 118791609 8 - TSS region transcription start site region 43072
Olfr1335 4 118808855 to 118809862 1007 - protein coding gene olfactory receptor 1335
Olfr1333 4 118829485 to 118830438 953 - protein coding gene olfactory receptor 1333
Olfr1332-ps1 4 118854092 to 118855045 953 + pseudogene olfactory receptor 1332, pseudogene 1
Olfr1331 4 118868783 to 118869736 953 + protein coding gene olfactory receptor 1331
Tssr38675 4 118875267 to 118875271 4 + TSS region transcription start site region 38675
Olfr1330 4 118893085 to 118894032 947 + protein coding gene olfactory receptor 1330
Olfr1329 4 118916524 to 118917465 941 - protein coding gene olfactory receptor 1329
Olfr1328 4 118933899 to 118934840 941 - protein coding gene olfactory receptor 1328
Gm12856 4 118942063 to 118943352 1289 - pseudogene predicted gene 12856
Gm12863 4 118954274 to 118954919 645 - antisense lncRNA gene predicted gene 12863
Tssr43073 4 118954824 to 118954838 14 - TSS region transcription start site region 43073
Tssr43074 4 118954847 to 118954858 11 - TSS region transcription start site region 43074
Tssr38676 4 118961599 to 118961612 13 + TSS region transcription start site region 38676
Tssr38677 4 118961691 to 118961698 7 + TSS region transcription start site region 38677
Tssr38678 4 118961725 to 118961735 10 + TSS region transcription start site region 38678
Tssr38679 4 118961866 to 118961871 5 + TSS region transcription start site region 38679
Tssr38680 4 118961942 to 118961961 19 + TSS region transcription start site region 38680
Lao1 4 118961967 to 118968910 6943 + protein coding gene L-amino acid oxidase 1
Tssr38681 4 118961984 to 118962001 17 + TSS region transcription start site region 38681
Tssr38682 4 118963790 to 118963796 6 + TSS region transcription start site region 38682
Tssr38683 4 118964177 to 118964181 4 + TSS region transcription start site region 38683
Tssr38684 4 118964192 to 118964200 8 + TSS region transcription start site region 38684
Tssr38685 4 118964208 to 118964219 11 + TSS region transcription start site region 38685
Tssr38686 4 118964220 to 118964223 3 + TSS region transcription start site region 38686
Tssr38687 4 118965326 to 118965337 11 + TSS region transcription start site region 38687
Tssr38688 4 118967833 to 118967838 5 + TSS region transcription start site region 38688
Tssr43075 4 118967993 to 118967998 5 - TSS region transcription start site region 43075
Tssr38689 4 118968092 to 118968100 8 + TSS region transcription start site region 38689
Tssr38690 4 118968156 to 118968169 13 + TSS region transcription start site region 38690
Tssr43076 4 118968618 to 118968632 14 - TSS region transcription start site region 43076
Gm12861 4 118971297 to 118999458 28161 + unclassified non-coding RNA gene predicted gene 12861
Gm24352 4 118980318 to 118980442 124 + snoRNA gene predicted gene, 24352
Gm12865 4 118984058 to 118997198 13140 - lincRNA gene predicted gene 12865
Tssr38691 4 118986942 to 118986944 2 + TSS region transcription start site region 38691
Gm12864 4 118987014 to 118988019 1005 + pseudogene predicted gene 12864
Tssr38692 4 118987470 to 118987471 1 + TSS region transcription start site region 38692
Gm12862 4 118999660 to 119000485 825 - lincRNA gene predicted gene 12862
Svwq1 4 119000000 to 90000000 -29000000 QTL seminal vesicle weight QTL 1
Tssr38693 4 119026797 to 119026811 14 + TSS region transcription start site region 38693
Lincred2 4 119050708 to 119061964 11256 + lncRNA gene long intergenic non-protein coding RNA of erythroid differentiation 2
Gm12866 4 119054790 to 119069111 14321 - lincRNA gene predicted gene 12866
Tssr38694 4 119072078 to 119072089 11 + TSS region transcription start site region 38694
Tssr43077 4 119072924 to 119072941 17 - TSS region transcription start site region 43077
Tssr43078 4 119072958 to 119072967 9 - TSS region transcription start site region 43078
Gm35510 4 119073001 to 119084352 11351 + lncRNA gene predicted gene, 35510
Cpgi14691 4 119105753 to 119106043 290 CpG island CpG island 14691
Tssr38695 4 119106017 to 119106034 17 + TSS region transcription start site region 38695
Tssr38696 4 119106037 to 119106048 11 + TSS region transcription start site region 38696
Tssr38697 4 119106057 to 119106066 9 + TSS region transcription start site region 38697
Tssr43079 4 119107978 to 119107998 20 - TSS region transcription start site region 43079
Cpgi14692 4 119108289 to 119109503 1214 CpG island CpG island 14692
Tssr38698 4 119108736 to 119108758 22 + TSS region transcription start site region 38698
Slc2a1 4 119108745 to 119137330 28585 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 1
Tssr38699 4 119108795 to 119108812 17 + TSS region transcription start site region 38699
Tssr38700 4 119109280 to 119109330 50 + TSS region transcription start site region 38700
Eosnp2 4 119115104 to 119115104 0 QTL percent eosinophils 2
Tssr38701 4 119120414 to 119120459 45 + TSS region transcription start site region 38701
Tssr38702 4 119126213 to 119126223 10 + TSS region transcription start site region 38702
Tssr43080 4 119127332 to 119127369 37 - TSS region transcription start site region 43080
Mir1957a 4 119129779 to 119129844 65 + miRNA gene microRNA 1957a
Gm12867 4 119130292 to 119131001 709 - antisense lncRNA gene predicted gene 12867
Tssr38703 4 119132156 to 119132212 56 + TSS region transcription start site region 38703
Tssr38704 4 119132229 to 119132244 15 + TSS region transcription start site region 38704
Tssr38705 4 119132624 to 119132638 14 + TSS region transcription start site region 38705
Tssr38706 4 119133184 to 119133220 36 + TSS region transcription start site region 38706
Tssr38707 4 119133427 to 119133490 63 + TSS region transcription start site region 38707
Gm12868 4 119133749 to 119138801 5052 - antisense lncRNA gene predicted gene 12868
Tssr38708 4 119136253 to 119136265 12 + TSS region transcription start site region 38708
Tssr38709 4 119136550 to 119136573 23 + TSS region transcription start site region 38709
Tssr38710 4 119136622 to 119136642 20 + TSS region transcription start site region 38710
Tssr38711 4 119136685 to 119136696 11 + TSS region transcription start site region 38711
Tssr38712 4 119136714 to 119136719 5 + TSS region transcription start site region 38712
Tssr38713 4 119136777 to 119136788 11 + TSS region transcription start site region 38713
Tssr38714 4 119136826 to 119136858 32 + TSS region transcription start site region 38714
Tssr38715 4 119136873 to 119136889 16 + TSS region transcription start site region 38715
Tssr38716 4 119136890 to 119136917 27 + TSS region transcription start site region 38716
Tssr38717 4 119137050 to 119137077 27 + TSS region transcription start site region 38717
Cpgi14693 4 119138339 to 119138507 168 CpG island CpG island 14693
Cpgi14694 4 119142402 to 119142741 339 CpG island CpG island 14694
Zfp691 4 119169516 to 119174195 4679 - protein coding gene zinc finger protein 691
Tssr43081 4 119169965 to 119169969 4 - TSS region transcription start site region 43081
Cpgi14695 4 119173795 to 119174410 615 CpG island CpG island 14695
Tssr43082 4 119173849 to 119173901 52 - TSS region transcription start site region 43082
Tssr43083 4 119174178 to 119174221 43 - TSS region transcription start site region 43083
Ermap 4 119175457 to 119190011 14554 - protein coding gene erythroblast membrane-associated protein
Tssr43084 4 119176715 to 119176765 50 - TSS region transcription start site region 43084
Tssr43085 4 119176812 to 119176833 21 - TSS region transcription start site region 43085
Tssr43086 4 119184007 to 119184025 18 - TSS region transcription start site region 43086
Tssr43087 4 119187314 to 119187337 23 - TSS region transcription start site region 43087
Tssr43088 4 119189949 to 119189964 15 - TSS region transcription start site region 43088
Tssr43089 4 119189970 to 119189981 11 - TSS region transcription start site region 43089
Tssr43090 4 119189983 to 119190003 20 - TSS region transcription start site region 43090
Tssr43091 4 119190005 to 119190016 11 - TSS region transcription start site region 43091
Cpgi14696 4 119195226 to 119195822 596 CpG island CpG island 14696
Tssr38718 4 119195279 to 119195293 14 + TSS region transcription start site region 38718
Svbp 4 119195310 to 119201298 5988 + protein coding gene small vasohibin binding protein
Tssr38719 4 119195335 to 119195344 9 + TSS region transcription start site region 38719
Tssr38720 4 119195353 to 119195395 42 + TSS region transcription start site region 38720
Tssr38721 4 119195416 to 119195426 10 + TSS region transcription start site region 38721
Tssr38722 4 119195444 to 119195455 11 + TSS region transcription start site region 38722
Tssr38723 4 119195512 to 119195515 3 + TSS region transcription start site region 38723
Tmem269 4 119205055 to 119218217 13162 - protein coding gene transmembrane protein 269
Opfaq6 4 119207798 to 121509300 2301502 QTL open field activity QTL 6
Tssr43092 4 119218165 to 119218183 18 - TSS region transcription start site region 43092
Tssr43093 4 119219205 to 119219228 23 - TSS region transcription start site region 43093
AU022252 4 119221359 to 119232789 11430 - protein coding gene expressed sequence AU022252
Gm12898 4 119223174 to 119224815 1641 + unclassified non-coding RNA gene predicted gene 12898
Cpgi14697 4 119232230 to 119233757 1527 CpG island CpG island 14697
Tssr43094 4 119232661 to 119232717 56 - TSS region transcription start site region 43094
Tssr43095 4 119232722 to 119232728 6 - TSS region transcription start site region 43095
Tssr1281 4 119232885 to 119232888 3 + TSS region transcription start site region 1281
Tssr38724 4 119232896 to 119232956 60 + TSS region transcription start site region 38724
P3h1 4 119232915 to 119248975 16060 + protein coding gene prolyl 3-hydroxylase 1
Tssr43096 4 119233716 to 119233732 16 - TSS region transcription start site region 43096
Tssr38725 4 119234578 to 119234579 1 + TSS region transcription start site region 38725
Tssr38726 4 119236902 to 119236905 3 + TSS region transcription start site region 38726
Gm12927 4 119252523 to 119256975 4452 - antisense lncRNA gene predicted gene 12927
Tssr38727 4 119255393 to 119255426 33 + TSS region transcription start site region 38727
Tssr38728 4 119255427 to 119255456 29 + TSS region transcription start site region 38728
Cldn19 4 119255441 to 119262438 6997 + protein coding gene claudin 19
Tssr38729 4 119255465 to 119255493 28 + TSS region transcription start site region 38729
Tssr38730 4 119255494 to 119255504 10 + TSS region transcription start site region 38730
Tssr43097 4 119257153 to 119257173 20 - TSS region transcription start site region 43097
Tssr38731 4 119257412 to 119257428 16 + TSS region transcription start site region 38731
Tssr38732 4 119262264 to 119262266 2 + TSS region transcription start site region 38732
Ybx1 4 119277981 to 119294604 16623 - protein coding gene Y box protein 1
Tssr43098 4 119279106 to 119279120 14 - TSS region transcription start site region 43098
Tssr43099 4 119282253 to 119282280 27 - TSS region transcription start site region 43099
Cpgi14698 4 119293479 to 119295096 1617 CpG island CpG island 14698
1700102N10Rik 4 119294136 to 119295146 1010 unclassified non-coding RNA gene RIKEN cDNA 1700102N10 gene
Tssr38733 4 119294175 to 119294191 16 + TSS region transcription start site region 38733
Tssr43100 4 119294238 to 119294310 72 - TSS region transcription start site region 43100
Tssr43101 4 119294400 to 119294445 45 - TSS region transcription start site region 43101
Tssr43102 4 119294447 to 119294470 23 - TSS region transcription start site region 43102
Tssr43103 4 119294500 to 119294518 18 - TSS region transcription start site region 43103
Tssr43104 4 119294520 to 119294538 18 - TSS region transcription start site region 43104
Tssr43105 4 119294714 to 119294725 11 - TSS region transcription start site region 43105
Tssr43106 4 119294744 to 119294753 9 - TSS region transcription start site region 43106
Gm37817 4 119295028 to 119295461 433 - unclassified gene predicted gene, 37817
Ppih 4 119300010 to 119320523 20513 - protein coding gene peptidyl prolyl isomerase H
Cpgi14699 4 119320093 to 119320735 642 CpG island CpG island 14699
Tssr43107 4 119320496 to 119320516 20 - TSS region transcription start site region 43107
Tssr38734 4 119320575 to 119320630 55 + TSS region transcription start site region 38734
Ccdc30 4 119322893 to 119415521 92628 - protein coding gene coiled-coil domain containing 30
Tssr43108 4 119333619 to 119333632 13 - TSS region transcription start site region 43108
Ldha-ps2 4 119334389 to 119335445 1056 - pseudogene lactate dehydrogenase A, pseudogene 2
Tssr43109 4 119335543 to 119335544 1 - TSS region transcription start site region 43109
Cpgi14700 4 119359504 to 119359866 362 CpG island CpG island 14700
Tssr43110 4 119359786 to 119359810 24 - TSS region transcription start site region 43110
Tssr43111 4 119359882 to 119359897 15 - TSS region transcription start site region 43111
Tssr43112 4 119359900 to 119359917 17 - TSS region transcription start site region 43112
Tssr43113 4 119383732 to 119383780 48 - TSS region transcription start site region 43113
Tssr43114 4 119383805 to 119383810 5 - TSS region transcription start site region 43114
Tssr43115 4 119383828 to 119383839 11 - TSS region transcription start site region 43115
Tssr43116 4 119404784 to 119404832 48 - TSS region transcription start site region 43116
Cpgi14701 4 119415006 to 119415689 683 CpG island CpG island 14701
Tssr43117 4 119415443 to 119415459 16 - TSS region transcription start site region 43117
Tssr43118 4 119415471 to 119415487 16 - TSS region transcription start site region 43118
Tssr43119 4 119415494 to 119415522 28 - TSS region transcription start site region 43119
Ppcs 4 119418530 to 119422420 3890 - protein coding gene phosphopantothenoylcysteine synthetase
Cpgi14702 4 119421748 to 119423160 1412 CpG island CpG island 14702
Tssr43120 4 119422355 to 119422418 63 - TSS region transcription start site region 43120
Zmynd12 4 119422657 to 119453899 31242 + protein coding gene zinc finger, MYND domain containing 12
Tssr38735 4 119422806 to 119422841 35 + TSS region transcription start site region 38735
Tssr38736 4 119422842 to 119422881 39 + TSS region transcription start site region 38736
D4Ertd669e 4 119460875 to 119461084 209 DNA segment DNA segment, Chr 4, ERATO Doi 669, expressed
Rimkla 4 119465283 to 119492598 27315 - protein coding gene ribosomal modification protein rimK-like family member A
Cpgi14703 4 119492028 to 119493123 1095 CpG island CpG island 14703
Tssr43121 4 119492547 to 119492561 14 - TSS region transcription start site region 43121
Tssr43122 4 119492563 to 119492618 55 - TSS region transcription start site region 43122
Gm12954 4 119501865 to 119502546 681 - pseudogene predicted gene 12954
Gm12956 4 119509648 to 119510061 413 - pseudogene predicted gene 12956
Gm12955 4 119519129 to 119520082 953 - pseudogene predicted gene 12955
Tssr38737 4 119520956 to 119520957 1 + TSS region transcription start site region 38737
Cpgi14704 4 119520988 to 119521342 354 CpG island CpG island 14704