Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:118485727-118755762

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tie1 4 118471191 to 118489849 18658 - protein coding gene tyrosine kinase with immunoglobulin-like and EGF-like domains 1
Cpgi14687 4 118486405 to 118486578 173 CpG island CpG island 14687
Tssr43059 4 118489761 to 118489777 16 - TSS region transcription start site region 43059
Tssr43060 4 118489789 to 118489831 42 - TSS region transcription start site region 43060
Tssr43061 4 118490030 to 118490063 33 - TSS region transcription start site region 43061
Gm12859 4 118490782 to 118497642 6860 - pseudogene predicted gene 12859
Gm12857 4 118522018 to 118522609 591 + pseudogene predicted gene 12857
Tssr38665 4 118526986 to 118527024 38 + TSS region transcription start site region 38665
2610528J11Rik 4 118526997 to 118530217 3220 + protein coding gene RIKEN cDNA 2610528J11 gene
Tssr38666 4 118527033 to 118527064 31 + TSS region transcription start site region 38666
Tssr38667 4 118527116 to 118527156 40 + TSS region transcription start site region 38667
Tssr38668 4 118527229 to 118527247 18 + TSS region transcription start site region 38668
Tssr38669 4 118527267 to 118527303 36 + TSS region transcription start site region 38669
Tmem125 4 118540941 to 118544044 3103 - protein coding gene transmembrane protein 125
Tssr43062 4 118542635 to 118542700 65 - TSS region transcription start site region 43062
Tssr43063 4 118543210 to 118543251 41 - TSS region transcription start site region 43063
Cpgi14688 4 118543744 to 118544042 298 CpG island CpG island 14688
Tssr43064 4 118544010 to 118544066 56 - TSS region transcription start site region 43064
Tssr43065 4 118544915 to 118544930 15 - TSS region transcription start site region 43065
Gm40237 4 118547139 to 118548256 1117 + lncRNA gene predicted gene, 40237
Tssr43066 4 118548256 to 118548288 32 - TSS region transcription start site region 43066
Cfap57 4 118554550 to 118620766 66216 - protein coding gene cilia and flagella associated protein 57
Tssr38670 4 118569040 to 118569045 5 + TSS region transcription start site region 38670
Cpgi14689 4 118571565 to 118571742 177 CpG island CpG island 14689
Cpgi14690 4 118620633 to 118621569 936 CpG island CpG island 14690
Tssr43067 4 118620727 to 118620762 35 - TSS region transcription start site region 43067
Tssr43068 4 118620763 to 118620792 29 - TSS region transcription start site region 43068
Tssr43069 4 118620798 to 118620806 8 - TSS region transcription start site region 43069
Ebna1bp2 4 118620799 to 118627776 6977 + protein coding gene EBNA1 binding protein 2
Tssr38671 4 118620813 to 118620899 86 + TSS region transcription start site region 38671
Tssr38672 4 118621213 to 118621239 26 + TSS region transcription start site region 38672
Tssr38673 4 118625523 to 118625525 2 + TSS region transcription start site region 38673
D4Ertd617e 4 118626404 to 118631915 5511 + lncRNA gene DNA segment, Chr 4, ERATO Doi 617, expressed
Gm12853 4 118632847 to 118636062 3215 - antisense lncRNA gene predicted gene 12853
Tssr43070 4 118636345 to 118636359 14 - TSS region transcription start site region 43070
Tssr43071 4 118636361 to 118636372 11 - TSS region transcription start site region 43071
Olfr62 4 118665519 to 118666466 947 + protein coding gene olfactory receptor 62
Olfr1343-ps1 4 118672609 to 118673522 913 - pseudogene olfactory receptor 1343, pseudogene 1
Olfr1342 4 118689152 to 118693034 3882 - protein coding gene olfactory receptor 1342
Olfr1341 4 118709409 to 118710347 938 + protein coding gene olfactory receptor 1341
Gm21942 4 118722776 to 118725477 2701 - pseudogene predicted gene, 21942
Olfr1340 4 118725722 to 118727196 1474 + protein coding gene olfactory receptor 1340
Olfr1339 4 118734531 to 118735478 947 + protein coding gene olfactory receptor 1339
Tssr38674 4 118741647 to 118741668 21 + TSS region transcription start site region 38674
Olfr1338 4 118753189 to 118756958 3769 - protein coding gene olfactory receptor 1338