Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:118290496-120350516

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374 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq1 4 117320449 to 120250558 2930109 QTL conditioned fear QTL 1
Ptprf 4 118208213 to 118291400 83187 - protein coding gene protein tyrosine phosphatase, receptor type, F
Cpgi14681 4 118289926 to 118291657 1731 CpG island CpG island 14681
Tssr43046 4 118291305 to 118291325 20 - TSS region transcription start site region 43046
Tssr43047 4 118291340 to 118291404 64 - TSS region transcription start site region 43047
Tssr43048 4 118291419 to 118291430 11 - TSS region transcription start site region 43048
Fgf23lq1 4 118300000 to 118300000 0 QTL FGF23 serum level QTL 1
Cpgi14682 4 118359712 to 118360705 993 CpG island CpG island 14682
Tssr38650 4 118359982 to 118360032 50 + TSS region transcription start site region 38650
Hyi 4 118359999 to 118362744 2745 + polymorphic pseudogene hydroxypyruvate isomerase (putative)
Tssr38651 4 118360048 to 118360057 9 + TSS region transcription start site region 38651
Tssr38652 4 118360071 to 118360082 11 + TSS region transcription start site region 38652
Szt2 4 118362743 to 118409273 46530 - protein coding gene seizure threshold 2
Tssr38653 4 118375496 to 118375502 6 + TSS region transcription start site region 38653
Cpgi14683 4 118408880 to 118409822 942 CpG island CpG island 14683
Tssr43049 4 118409219 to 118409282 63 - TSS region transcription start site region 43049
Tssr38654 4 118409331 to 118409374 43 + TSS region transcription start site region 38654
Med8 4 118409337 to 118415782 6445 + protein coding gene mediator complex subunit 8
Tssr1279 4 118409385 to 118409392 7 + TSS region transcription start site region 1279
Tssr38655 4 118410870 to 118410882 12 + TSS region transcription start site region 38655
Tssr38656 4 118411736 to 118411758 22 + TSS region transcription start site region 38656
Tssr38657 4 118426895 to 118426898 3 + TSS region transcription start site region 38657
Cpgi14684 4 118427786 to 118428048 262 CpG island CpG island 14684
Tssr38658 4 118428078 to 118428194 116 + TSS region transcription start site region 38658
Elovl1 4 118428093 to 118432953 4860 + protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
Tssr38659 4 118428796 to 118428816 20 + TSS region transcription start site region 38659
Tssr38660 4 118429681 to 118429690 9 + TSS region transcription start site region 38660
Tssr38661 4 118429702 to 118429725 23 + TSS region transcription start site region 38661
Tssr38662 4 118429741 to 118429764 23 + TSS region transcription start site region 38662
Tssr38663 4 118431206 to 118431214 8 + TSS region transcription start site region 38663
Cdc20 4 118432901 to 118437343 4442 - protein coding gene cell division cycle 20
Cpgi14685 4 118436512 to 118437671 1159 CpG island CpG island 14685
Tssr43050 4 118436783 to 118436799 16 - TSS region transcription start site region 43050
Tssr43051 4 118436979 to 118437021 42 - TSS region transcription start site region 43051
Tssr43052 4 118437231 to 118437240 9 - TSS region transcription start site region 43052
Tssr43053 4 118437266 to 118437275 9 - TSS region transcription start site region 43053
Tssr43054 4 118437284 to 118437304 20 - TSS region transcription start site region 43054
Tssr43055 4 118437331 to 118437354 23 - TSS region transcription start site region 43055
Tssr43056 4 118437362 to 118437374 12 - TSS region transcription start site region 43056
Tssr38664 4 118437477 to 118437504 27 + TSS region transcription start site region 38664
Gm12858 4 118441013 to 118441220 207 - pseudogene predicted gene 12858
Mpl 4 118442415 to 118457513 15098 - protein coding gene myeloproliferative leukemia virus oncogene
Cpgi14686 4 118446114 to 118446616 502 CpG island CpG island 14686
Tssr1280 4 118449693 to 118449694 1 - TSS region transcription start site region 1280
Tssr43057 4 118457467 to 118457507 40 - TSS region transcription start site region 43057
Tssr43058 4 118457509 to 118457515 6 - TSS region transcription start site region 43058
Tie1 4 118471191 to 118489849 18658 - protein coding gene tyrosine kinase with immunoglobulin-like and EGF-like domains 1
Cpgi14687 4 118486405 to 118486578 173 CpG island CpG island 14687
Tssr43059 4 118489761 to 118489777 16 - TSS region transcription start site region 43059
Tssr43060 4 118489789 to 118489831 42 - TSS region transcription start site region 43060
Tssr43061 4 118490030 to 118490063 33 - TSS region transcription start site region 43061
Gm12859 4 118490782 to 118497642 6860 - pseudogene predicted gene 12859
Gm12857 4 118522018 to 118522609 591 + pseudogene predicted gene 12857
Tssr38665 4 118526986 to 118527024 38 + TSS region transcription start site region 38665
2610528J11Rik 4 118526997 to 118530217 3220 + protein coding gene RIKEN cDNA 2610528J11 gene
Tssr38666 4 118527033 to 118527064 31 + TSS region transcription start site region 38666
Tssr38667 4 118527116 to 118527156 40 + TSS region transcription start site region 38667
Tssr38668 4 118527229 to 118527247 18 + TSS region transcription start site region 38668
Tssr38669 4 118527267 to 118527303 36 + TSS region transcription start site region 38669
Tmem125 4 118540941 to 118544044 3103 - protein coding gene transmembrane protein 125
Tssr43062 4 118542635 to 118542700 65 - TSS region transcription start site region 43062
Tssr43063 4 118543210 to 118543251 41 - TSS region transcription start site region 43063
Cpgi14688 4 118543744 to 118544042 298 CpG island CpG island 14688
Tssr43064 4 118544010 to 118544066 56 - TSS region transcription start site region 43064
Tssr43065 4 118544915 to 118544930 15 - TSS region transcription start site region 43065
Gm40237 4 118547139 to 118548256 1117 + lncRNA gene predicted gene, 40237
Tssr43066 4 118548256 to 118548288 32 - TSS region transcription start site region 43066
Cfap57 4 118554550 to 118620766 66216 - protein coding gene cilia and flagella associated protein 57
Tssr38670 4 118569040 to 118569045 5 + TSS region transcription start site region 38670
Cpgi14689 4 118571565 to 118571742 177 CpG island CpG island 14689
Cpgi14690 4 118620633 to 118621569 936 CpG island CpG island 14690
Tssr43067 4 118620727 to 118620762 35 - TSS region transcription start site region 43067
Tssr43068 4 118620763 to 118620792 29 - TSS region transcription start site region 43068
Tssr43069 4 118620798 to 118620806 8 - TSS region transcription start site region 43069
Ebna1bp2 4 118620799 to 118627776 6977 + protein coding gene EBNA1 binding protein 2
Tssr38671 4 118620813 to 118620899 86 + TSS region transcription start site region 38671
Tssr38672 4 118621213 to 118621239 26 + TSS region transcription start site region 38672
Tssr38673 4 118625523 to 118625525 2 + TSS region transcription start site region 38673
D4Ertd617e 4 118626404 to 118631915 5511 + lncRNA gene DNA segment, Chr 4, ERATO Doi 617, expressed
Gm12853 4 118632847 to 118636062 3215 - antisense lncRNA gene predicted gene 12853
Tssr43070 4 118636345 to 118636359 14 - TSS region transcription start site region 43070
Tssr43071 4 118636361 to 118636372 11 - TSS region transcription start site region 43071
Olfr62 4 118665519 to 118666466 947 + protein coding gene olfactory receptor 62
Olfr1343-ps1 4 118672609 to 118673522 913 - pseudogene olfactory receptor 1343, pseudogene 1
Olfr1342 4 118689152 to 118693034 3882 - protein coding gene olfactory receptor 1342
Olfr1341 4 118709409 to 118710347 938 + protein coding gene olfactory receptor 1341
Gm21942 4 118722776 to 118725477 2701 - pseudogene predicted gene, 21942
Olfr1340 4 118725722 to 118727196 1474 + protein coding gene olfactory receptor 1340
Olfr1339 4 118734531 to 118735478 947 + protein coding gene olfactory receptor 1339
Tssr38674 4 118741647 to 118741668 21 + TSS region transcription start site region 38674
Olfr1338 4 118753189 to 118756958 3769 - protein coding gene olfactory receptor 1338
Olfr1337 4 118781636 to 118782586 950 - protein coding gene olfactory receptor 1337
Gm12855 4 118791081 to 118791593 512 - pseudogene predicted gene 12855
Tssr43072 4 118791601 to 118791609 8 - TSS region transcription start site region 43072
Olfr1335 4 118808855 to 118809862 1007 - protein coding gene olfactory receptor 1335
Olfr1333 4 118829485 to 118830438 953 - protein coding gene olfactory receptor 1333
Olfr1332-ps1 4 118854092 to 118855045 953 + pseudogene olfactory receptor 1332, pseudogene 1
Olfr1331 4 118868783 to 118869736 953 + protein coding gene olfactory receptor 1331
Tssr38675 4 118875267 to 118875271 4 + TSS region transcription start site region 38675
Olfr1330 4 118893085 to 118894032 947 + protein coding gene olfactory receptor 1330
Olfr1329 4 118916524 to 118917465 941 - protein coding gene olfactory receptor 1329
Olfr1328 4 118933899 to 118934840 941 - protein coding gene olfactory receptor 1328
Gm12856 4 118942063 to 118943352 1289 - pseudogene predicted gene 12856
Gm12863 4 118954274 to 118954919 645 - antisense lncRNA gene predicted gene 12863
Tssr43073 4 118954824 to 118954838 14 - TSS region transcription start site region 43073
Tssr43074 4 118954847 to 118954858 11 - TSS region transcription start site region 43074
Tssr38676 4 118961599 to 118961612 13 + TSS region transcription start site region 38676
Tssr38677 4 118961691 to 118961698 7 + TSS region transcription start site region 38677
Tssr38678 4 118961725 to 118961735 10 + TSS region transcription start site region 38678
Tssr38679 4 118961866 to 118961871 5 + TSS region transcription start site region 38679
Tssr38680 4 118961942 to 118961961 19 + TSS region transcription start site region 38680
Lao1 4 118961967 to 118968910 6943 + protein coding gene L-amino acid oxidase 1
Tssr38681 4 118961984 to 118962001 17 + TSS region transcription start site region 38681
Tssr38682 4 118963790 to 118963796 6 + TSS region transcription start site region 38682
Tssr38683 4 118964177 to 118964181 4 + TSS region transcription start site region 38683
Tssr38684 4 118964192 to 118964200 8 + TSS region transcription start site region 38684
Tssr38685 4 118964208 to 118964219 11 + TSS region transcription start site region 38685
Tssr38686 4 118964220 to 118964223 3 + TSS region transcription start site region 38686
Tssr38687 4 118965326 to 118965337 11 + TSS region transcription start site region 38687
Tssr38688 4 118967833 to 118967838 5 + TSS region transcription start site region 38688
Tssr43075 4 118967993 to 118967998 5 - TSS region transcription start site region 43075
Tssr38689 4 118968092 to 118968100 8 + TSS region transcription start site region 38689
Tssr38690 4 118968156 to 118968169 13 + TSS region transcription start site region 38690
Tssr43076 4 118968618 to 118968632 14 - TSS region transcription start site region 43076
Gm12861 4 118971297 to 118999458 28161 + unclassified non-coding RNA gene predicted gene 12861
Gm24352 4 118980318 to 118980442 124 + snoRNA gene predicted gene, 24352
Gm12865 4 118984058 to 118997198 13140 - lincRNA gene predicted gene 12865
Tssr38691 4 118986942 to 118986944 2 + TSS region transcription start site region 38691
Gm12864 4 118987014 to 118988019 1005 + pseudogene predicted gene 12864
Tssr38692 4 118987470 to 118987471 1 + TSS region transcription start site region 38692
Gm12862 4 118999660 to 119000485 825 - lincRNA gene predicted gene 12862
Svwq1 4 119000000 to 90000000 -29000000 QTL seminal vesicle weight QTL 1
Tssr38693 4 119026797 to 119026811 14 + TSS region transcription start site region 38693
Lincred2 4 119050708 to 119061964 11256 + lncRNA gene long intergenic non-protein coding RNA of erythroid differentiation 2
Gm12866 4 119054790 to 119069111 14321 - lincRNA gene predicted gene 12866
Tssr38694 4 119072078 to 119072089 11 + TSS region transcription start site region 38694
Tssr43077 4 119072924 to 119072941 17 - TSS region transcription start site region 43077
Tssr43078 4 119072958 to 119072967 9 - TSS region transcription start site region 43078
Gm35510 4 119073001 to 119084352 11351 + lncRNA gene predicted gene, 35510
Cpgi14691 4 119105753 to 119106043 290 CpG island CpG island 14691
Tssr38695 4 119106017 to 119106034 17 + TSS region transcription start site region 38695
Tssr38696 4 119106037 to 119106048 11 + TSS region transcription start site region 38696
Tssr38697 4 119106057 to 119106066 9 + TSS region transcription start site region 38697
Tssr43079 4 119107978 to 119107998 20 - TSS region transcription start site region 43079
Cpgi14692 4 119108289 to 119109503 1214 CpG island CpG island 14692
Tssr38698 4 119108736 to 119108758 22 + TSS region transcription start site region 38698
Slc2a1 4 119108745 to 119137330 28585 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 1
Tssr38699 4 119108795 to 119108812 17 + TSS region transcription start site region 38699
Tssr38700 4 119109280 to 119109330 50 + TSS region transcription start site region 38700
Eosnp2 4 119115104 to 119115104 0 QTL percent eosinophils 2
Tssr38701 4 119120414 to 119120459 45 + TSS region transcription start site region 38701
Tssr38702 4 119126213 to 119126223 10 + TSS region transcription start site region 38702
Tssr43080 4 119127332 to 119127369 37 - TSS region transcription start site region 43080
Mir1957a 4 119129779 to 119129844 65 + miRNA gene microRNA 1957a
Gm12867 4 119130292 to 119131001 709 - antisense lncRNA gene predicted gene 12867
Tssr38703 4 119132156 to 119132212 56 + TSS region transcription start site region 38703
Tssr38704 4 119132229 to 119132244 15 + TSS region transcription start site region 38704
Tssr38705 4 119132624 to 119132638 14 + TSS region transcription start site region 38705
Tssr38706 4 119133184 to 119133220 36 + TSS region transcription start site region 38706
Tssr38707 4 119133427 to 119133490 63 + TSS region transcription start site region 38707
Gm12868 4 119133749 to 119138801 5052 - antisense lncRNA gene predicted gene 12868
Tssr38708 4 119136253 to 119136265 12 + TSS region transcription start site region 38708
Tssr38709 4 119136550 to 119136573 23 + TSS region transcription start site region 38709
Tssr38710 4 119136622 to 119136642 20 + TSS region transcription start site region 38710
Tssr38711 4 119136685 to 119136696 11 + TSS region transcription start site region 38711
Tssr38712 4 119136714 to 119136719 5 + TSS region transcription start site region 38712
Tssr38713 4 119136777 to 119136788 11 + TSS region transcription start site region 38713
Tssr38714 4 119136826 to 119136858 32 + TSS region transcription start site region 38714
Tssr38715 4 119136873 to 119136889 16 + TSS region transcription start site region 38715
Tssr38716 4 119136890 to 119136917 27 + TSS region transcription start site region 38716
Tssr38717 4 119137050 to 119137077 27 + TSS region transcription start site region 38717
Cpgi14693 4 119138339 to 119138507 168 CpG island CpG island 14693
Cpgi14694 4 119142402 to 119142741 339 CpG island CpG island 14694
Zfp691 4 119169516 to 119174195 4679 - protein coding gene zinc finger protein 691
Tssr43081 4 119169965 to 119169969 4 - TSS region transcription start site region 43081
Cpgi14695 4 119173795 to 119174410 615 CpG island CpG island 14695
Tssr43082 4 119173849 to 119173901 52 - TSS region transcription start site region 43082
Tssr43083 4 119174178 to 119174221 43 - TSS region transcription start site region 43083
Ermap 4 119175457 to 119190011 14554 - protein coding gene erythroblast membrane-associated protein
Tssr43084 4 119176715 to 119176765 50 - TSS region transcription start site region 43084
Tssr43085 4 119176812 to 119176833 21 - TSS region transcription start site region 43085
Tssr43086 4 119184007 to 119184025 18 - TSS region transcription start site region 43086
Tssr43087 4 119187314 to 119187337 23 - TSS region transcription start site region 43087
Tssr43088 4 119189949 to 119189964 15 - TSS region transcription start site region 43088
Tssr43089 4 119189970 to 119189981 11 - TSS region transcription start site region 43089
Tssr43090 4 119189983 to 119190003 20 - TSS region transcription start site region 43090
Tssr43091 4 119190005 to 119190016 11 - TSS region transcription start site region 43091
Cpgi14696 4 119195226 to 119195822 596 CpG island CpG island 14696
Tssr38718 4 119195279 to 119195293 14 + TSS region transcription start site region 38718
Svbp 4 119195310 to 119201298 5988 + protein coding gene small vasohibin binding protein
Tssr38719 4 119195335 to 119195344 9 + TSS region transcription start site region 38719
Tssr38720 4 119195353 to 119195395 42 + TSS region transcription start site region 38720
Tssr38721 4 119195416 to 119195426 10 + TSS region transcription start site region 38721
Tssr38722 4 119195444 to 119195455 11 + TSS region transcription start site region 38722
Tssr38723 4 119195512 to 119195515 3 + TSS region transcription start site region 38723
Tmem269 4 119205055 to 119218217 13162 - protein coding gene transmembrane protein 269
Opfaq6 4 119207798 to 121509300 2301502 QTL open field activity QTL 6
Tssr43092 4 119218165 to 119218183 18 - TSS region transcription start site region 43092
Tssr43093 4 119219205 to 119219228 23 - TSS region transcription start site region 43093
AU022252 4 119221359 to 119232789 11430 - protein coding gene expressed sequence AU022252