Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:117939007-118519016

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
St3gal3 4 117932154 to 118134914 202760 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3
Tssr43022 4 117953575 to 117953583 8 - TSS region transcription start site region 43022
Tssr43023 4 117964721 to 117964739 18 - TSS region transcription start site region 43023
Tssr43024 4 117964744 to 117964770 26 - TSS region transcription start site region 43024
Tssr38642 4 117974982 to 117975003 21 + TSS region transcription start site region 38642
Tssr38643 4 117975027 to 117975040 13 + TSS region transcription start site region 38643
9530034E10Rik 4 117975036 to 117993972 18936 + antisense lncRNA gene RIKEN cDNA 9530034E10 gene
Tssr38644 4 117977595 to 117977606 11 + TSS region transcription start site region 38644
Tssr38645 4 117982968 to 117982979 11 + TSS region transcription start site region 38645
Tssr43025 4 117993970 to 117993976 6 - TSS region transcription start site region 43025
Tssr38646 4 117998627 to 117998636 9 + TSS region transcription start site region 38646
D4Dcr18 4 118001754 to 118001853 99 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 18
Tssr43026 4 118005892 to 118005935 43 - TSS region transcription start site region 43026
Tssr43027 4 118012489 to 118012492 3 - TSS region transcription start site region 43027
Tssr1278 4 118024592 to 118024593 1 - TSS region transcription start site region 1278
Tssr43028 4 118029199 to 118029238 39 - TSS region transcription start site region 43028
Tssr43029 4 118054734 to 118054755 21 - TSS region transcription start site region 43029
Tssr43030 4 118076777 to 118076818 41 - TSS region transcription start site region 43030
Tssr38647 4 118076990 to 118077019 29 + TSS region transcription start site region 38647
Tssr43031 4 118091750 to 118091799 49 - TSS region transcription start site region 43031
Tssr43032 4 118117702 to 118117709 7 - TSS region transcription start site region 43032
D4Mit57 4 118119230 to 118119356 126 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 57
Cpgi14677 4 118134338 to 118135368 1030 CpG island CpG island 14677
Tssr43033 4 118134673 to 118134687 14 - TSS region transcription start site region 43033
Tssr43034 4 118134801 to 118134812 11 - TSS region transcription start site region 43034
Tssr43035 4 118134869 to 118134962 93 - TSS region transcription start site region 43035
Kdm4a 4 118136957 to 118180043 43086 - protein coding gene lysine (K)-specific demethylase 4A
Tssr43036 4 118139009 to 118139020 11 - TSS region transcription start site region 43036
Tssr43037 4 118144279 to 118144293 14 - TSS region transcription start site region 43037
Tssr43038 4 118144479 to 118144492 13 - TSS region transcription start site region 43038
Gm23382 4 118164078 to 118164181 103 + snoRNA gene predicted gene, 23382
Cpgi14678 4 118172997 to 118173195 198 CpG island CpG island 14678
Cpgi14679 4 118179518 to 118180256 738 CpG island CpG island 14679
Tssr43039 4 118179628 to 118179682 54 - TSS region transcription start site region 43039
Tssr43040 4 118179954 to 118180035 81 - TSS region transcription start site region 43040
Tssr43041 4 118180043 to 118180054 11 - TSS region transcription start site region 43041
Ptprf 4 118208213 to 118291400 83187 - protein coding gene protein tyrosine phosphatase, receptor type, F
Mir7226 4 118210505 to 118210564 59 - miRNA gene microRNA 7226
Tssr43042 4 118229007 to 118229016 9 - TSS region transcription start site region 43042
Tssr38648 4 118229776 to 118229784 8 + TSS region transcription start site region 38648
Tssr43043 4 118231779 to 118231794 15 - TSS region transcription start site region 43043
Tssr43044 4 118248917 to 118248942 25 - TSS region transcription start site region 43044
Gm40235 4 118252250 to 118257481 5231 - lncRNA gene predicted gene, 40235
Cpgi14680 4 118260634 to 118261233 599 CpG island CpG island 14680
Tssr43045 4 118269730 to 118269737 7 - TSS region transcription start site region 43045
Tssr38649 4 118289878 to 118289890 12 + TSS region transcription start site region 38649
Cpgi14681 4 118289926 to 118291657 1731 CpG island CpG island 14681
Tssr43046 4 118291305 to 118291325 20 - TSS region transcription start site region 43046
Tssr43047 4 118291340 to 118291404 64 - TSS region transcription start site region 43047
Tssr43048 4 118291419 to 118291430 11 - TSS region transcription start site region 43048
Fgf23lq1 4 118300000 to 118300000 0 QTL FGF23 serum level QTL 1
Cpgi14682 4 118359712 to 118360705 993 CpG island CpG island 14682
Tssr38650 4 118359982 to 118360032 50 + TSS region transcription start site region 38650
Hyi 4 118359999 to 118362744 2745 + polymorphic pseudogene hydroxypyruvate isomerase (putative)
Tssr38651 4 118360048 to 118360057 9 + TSS region transcription start site region 38651
Tssr38652 4 118360071 to 118360082 11 + TSS region transcription start site region 38652
Szt2 4 118362743 to 118409273 46530 - protein coding gene seizure threshold 2
Tssr38653 4 118375496 to 118375502 6 + TSS region transcription start site region 38653
Cpgi14683 4 118408880 to 118409822 942 CpG island CpG island 14683
Tssr43049 4 118409219 to 118409282 63 - TSS region transcription start site region 43049
Tssr38654 4 118409331 to 118409374 43 + TSS region transcription start site region 38654
Med8 4 118409337 to 118415782 6445 + protein coding gene mediator complex subunit 8
Tssr1279 4 118409385 to 118409392 7 + TSS region transcription start site region 1279
Tssr38655 4 118410870 to 118410882 12 + TSS region transcription start site region 38655
Tssr38656 4 118411736 to 118411758 22 + TSS region transcription start site region 38656
Tssr38657 4 118426895 to 118426898 3 + TSS region transcription start site region 38657
Cpgi14684 4 118427786 to 118428048 262 CpG island CpG island 14684
Tssr38658 4 118428078 to 118428194 116 + TSS region transcription start site region 38658
Elovl1 4 118428093 to 118432953 4860 + protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1
Tssr38659 4 118428796 to 118428816 20 + TSS region transcription start site region 38659
Tssr38660 4 118429681 to 118429690 9 + TSS region transcription start site region 38660
Tssr38661 4 118429702 to 118429725 23 + TSS region transcription start site region 38661
Tssr38662 4 118429741 to 118429764 23 + TSS region transcription start site region 38662
Tssr38663 4 118431206 to 118431214 8 + TSS region transcription start site region 38663
Cdc20 4 118432901 to 118437343 4442 - protein coding gene cell division cycle 20
Cpgi14685 4 118436512 to 118437671 1159 CpG island CpG island 14685
Tssr43050 4 118436783 to 118436799 16 - TSS region transcription start site region 43050
Tssr43051 4 118436979 to 118437021 42 - TSS region transcription start site region 43051
Tssr43052 4 118437231 to 118437240 9 - TSS region transcription start site region 43052
Tssr43053 4 118437266 to 118437275 9 - TSS region transcription start site region 43053
Tssr43054 4 118437284 to 118437304 20 - TSS region transcription start site region 43054
Tssr43055 4 118437331 to 118437354 23 - TSS region transcription start site region 43055
Tssr43056 4 118437362 to 118437374 12 - TSS region transcription start site region 43056
Tssr38664 4 118437477 to 118437504 27 + TSS region transcription start site region 38664
Gm12858 4 118441013 to 118441220 207 - pseudogene predicted gene 12858
Mpl 4 118442415 to 118457513 15098 - protein coding gene myeloproliferative leukemia virus oncogene
Cpgi14686 4 118446114 to 118446616 502 CpG island CpG island 14686
Tssr1280 4 118449693 to 118449694 1 - TSS region transcription start site region 1280
Tssr43057 4 118457467 to 118457507 40 - TSS region transcription start site region 43057
Tssr43058 4 118457509 to 118457515 6 - TSS region transcription start site region 43058
Tie1 4 118471191 to 118489849 18658 - protein coding gene tyrosine kinase with immunoglobulin-like and EGF-like domains 1
Cpgi14687 4 118486405 to 118486578 173 CpG island CpG island 14687
Tssr43059 4 118489761 to 118489777 16 - TSS region transcription start site region 43059
Tssr43060 4 118489789 to 118489831 42 - TSS region transcription start site region 43060
Tssr43061 4 118490030 to 118490063 33 - TSS region transcription start site region 43061
Gm12859 4 118490782 to 118497642 6860 - pseudogene predicted gene 12859