Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:117889734-118219755

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dph2 4 117888643 to 117892003 3360 - protein coding gene DPH2 homolog
Cpgi14672 4 117891588 to 117892262 674 CpG island CpG island 14672
Tssr43008 4 117891994 to 117892040 46 - TSS region transcription start site region 43008
Ipo13 4 117894486 to 117914999 20513 - protein coding gene importin 13
Tssr43009 4 117904588 to 117904615 27 - TSS region transcription start site region 43009
Cpgi14673 4 117912029 to 117912332 303 CpG island CpG island 14673
Cpgi14674 4 117914304 to 117915513 1209 CpG island CpG island 14674
Tssr43010 4 117914701 to 117914712 11 - TSS region transcription start site region 43010
Tssr43011 4 117914940 to 117914957 17 - TSS region transcription start site region 43011
Tssr43012 4 117914968 to 117915018 50 - TSS region transcription start site region 43012
Tssr43013 4 117915036 to 117915054 18 - TSS region transcription start site region 43013
Tssr43014 4 117915129 to 117915175 46 - TSS region transcription start site region 43014
Tssr43015 4 117915193 to 117915198 5 - TSS region transcription start site region 43015
Artn 4 117926162 to 117929763 3601 - protein coding gene artemin
Cpgi14675 4 117926362 to 117927559 1197 CpG island CpG island 14675
Tssr43016 4 117926753 to 117926760 7 - TSS region transcription start site region 43016
Tssr43017 4 117926761 to 117926770 9 - TSS region transcription start site region 43017
Cpgi14676 4 117929379 to 117929975 596 CpG island CpG island 14676
Tssr43018 4 117929466 to 117929475 9 - TSS region transcription start site region 43018
Tssr43019 4 117929493 to 117929510 17 - TSS region transcription start site region 43019
Tssr43020 4 117929726 to 117929739 13 - TSS region transcription start site region 43020
Tssr43021 4 117929749 to 117929776 27 - TSS region transcription start site region 43021
St3gal3 4 117932154 to 118134914 202760 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3
Tssr43022 4 117953575 to 117953583 8 - TSS region transcription start site region 43022
Tssr43023 4 117964721 to 117964739 18 - TSS region transcription start site region 43023
Tssr43024 4 117964744 to 117964770 26 - TSS region transcription start site region 43024
Tssr38642 4 117974982 to 117975003 21 + TSS region transcription start site region 38642
Tssr38643 4 117975027 to 117975040 13 + TSS region transcription start site region 38643
9530034E10Rik 4 117975036 to 117993972 18936 + antisense lncRNA gene RIKEN cDNA 9530034E10 gene
Tssr38644 4 117977595 to 117977606 11 + TSS region transcription start site region 38644
Tssr38645 4 117982968 to 117982979 11 + TSS region transcription start site region 38645
Tssr43025 4 117993970 to 117993976 6 - TSS region transcription start site region 43025
Tssr38646 4 117998627 to 117998636 9 + TSS region transcription start site region 38646
D4Dcr18 4 118001754 to 118001853 99 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 18
Tssr43026 4 118005892 to 118005935 43 - TSS region transcription start site region 43026
Tssr43027 4 118012489 to 118012492 3 - TSS region transcription start site region 43027
Tssr1278 4 118024592 to 118024593 1 - TSS region transcription start site region 1278
Tssr43028 4 118029199 to 118029238 39 - TSS region transcription start site region 43028
Tssr43029 4 118054734 to 118054755 21 - TSS region transcription start site region 43029
Tssr43030 4 118076777 to 118076818 41 - TSS region transcription start site region 43030
Tssr38647 4 118076990 to 118077019 29 + TSS region transcription start site region 38647
Tssr43031 4 118091750 to 118091799 49 - TSS region transcription start site region 43031
Tssr43032 4 118117702 to 118117709 7 - TSS region transcription start site region 43032
D4Mit57 4 118119230 to 118119356 126 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 57
Cpgi14677 4 118134338 to 118135368 1030 CpG island CpG island 14677
Tssr43033 4 118134673 to 118134687 14 - TSS region transcription start site region 43033
Tssr43034 4 118134801 to 118134812 11 - TSS region transcription start site region 43034
Tssr43035 4 118134869 to 118134962 93 - TSS region transcription start site region 43035
Kdm4a 4 118136957 to 118180043 43086 - protein coding gene lysine (K)-specific demethylase 4A
Tssr43036 4 118139009 to 118139020 11 - TSS region transcription start site region 43036
Tssr43037 4 118144279 to 118144293 14 - TSS region transcription start site region 43037
Tssr43038 4 118144479 to 118144492 13 - TSS region transcription start site region 43038
Gm23382 4 118164078 to 118164181 103 + snoRNA gene predicted gene, 23382
Cpgi14678 4 118172997 to 118173195 198 CpG island CpG island 14678
Cpgi14679 4 118179518 to 118180256 738 CpG island CpG island 14679
Tssr43039 4 118179628 to 118179682 54 - TSS region transcription start site region 43039
Tssr43040 4 118179954 to 118180035 81 - TSS region transcription start site region 43040
Tssr43041 4 118180043 to 118180054 11 - TSS region transcription start site region 43041
Ptprf 4 118208213 to 118291400 83187 - protein coding gene protein tyrosine phosphatase, receptor type, F
Mir7226 4 118210505 to 118210564 59 - miRNA gene microRNA 7226