Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:117682251-117892262

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dmap1 4 117674681 to 117682273 7592 - protein coding gene DNA methyltransferase 1-associated protein 1
Cpgi14667 4 117681480 to 117682424 944 CpG island CpG island 14667
Tssr42991 4 117682233 to 117682279 46 - TSS region transcription start site region 42991
Gm34746 4 117699075 to 117704029 4954 + lncRNA gene predicted gene, 34746
Gm12840 4 117700188 to 117700923 735 + lincRNA gene predicted gene 12840
Gm12845 4 117724574 to 117725971 1397 + protein coding gene predicted gene 12845
Gm12844 4 117728718 to 117729299 581 - pseudogene predicted gene 12844
Klf17 4 117757836 to 117765648 7812 - protein coding gene Kruppel-like factor 17
Tssr42992 4 117765550 to 117765570 20 - TSS region transcription start site region 42992
Gm40232 4 117781698 to 117787137 5439 - lncRNA gene predicted gene, 40232
Tssr38628 4 117787251 to 117787262 11 + TSS region transcription start site region 38628
Tssr38629 4 117787268 to 117787284 16 + TSS region transcription start site region 38629
Tssr38630 4 117787290 to 117787301 11 + TSS region transcription start site region 38630
Gm12842 4 117825181 to 117825656 475 - pseudogene predicted gene 12842
Tssr42993 4 117825691 to 117825696 5 - TSS region transcription start site region 42993
Tssr38631 4 117835235 to 117835275 40 + TSS region transcription start site region 38631
Cpgi14668 4 117835258 to 117836755 1497 CpG island CpG island 14668
Slc6a9 4 117835258 to 117869305 34047 + protein coding gene solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Tssr38632 4 117835278 to 117835301 23 + TSS region transcription start site region 38632
Gm17114 4 117835299 to 117868558 33259 - lncRNA gene predicted gene 17114
Tssr38633 4 117835304 to 117835333 29 + TSS region transcription start site region 38633
Tssr38634 4 117835338 to 117835349 11 + TSS region transcription start site region 38634
Tssr38635 4 117835387 to 117835428 41 + TSS region transcription start site region 38635
Tssr42994 4 117835845 to 117835847 2 - TSS region transcription start site region 42994
Tssr38636 4 117849301 to 117849308 7 + TSS region transcription start site region 38636
Tssr38637 4 117849309 to 117849334 25 + TSS region transcription start site region 38637
Tssr38638 4 117849340 to 117849355 15 + TSS region transcription start site region 38638
Tssr38639 4 117849361 to 117849375 14 + TSS region transcription start site region 38639
Cpgi14669 4 117867798 to 117868197 399 CpG island CpG island 14669
Ccdc24 4 117869260 to 117872661 3401 - protein coding gene coiled-coil domain containing 24
Tssr42995 4 117871300 to 117871317 17 - TSS region transcription start site region 42995
Tssr42996 4 117871324 to 117871335 11 - TSS region transcription start site region 42996
Tssr42997 4 117872026 to 117872038 12 - TSS region transcription start site region 42997
Tssr42998 4 117872548 to 117872560 12 - TSS region transcription start site region 42998
Tssr42999 4 117872563 to 117872593 30 - TSS region transcription start site region 42999
Tssr43000 4 117872596 to 117872614 18 - TSS region transcription start site region 43000
Tssr43001 4 117872744 to 117872792 48 - TSS region transcription start site region 43001
B4galt2 4 117873000 to 117883482 10482 - protein coding gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2
Gm40233 4 117874528 to 117879336 4808 + lncRNA gene predicted gene, 40233
Cpgi14670 4 117882697 to 117883844 1147 CpG island CpG island 14670
Tssr43002 4 117883428 to 117883507 79 - TSS region transcription start site region 43002
Tssr38640 4 117883542 to 117883579 37 + TSS region transcription start site region 38640
Tssr38641 4 117883597 to 117883610 13 + TSS region transcription start site region 38641
Gm12841 4 117883621 to 117885995 2374 + antisense lncRNA gene predicted gene 12841
Atp6v0b 4 117884330 to 117887329 2999 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit B
Tssr43003 4 117884497 to 117884528 31 - TSS region transcription start site region 43003
Cpgi14671 4 117886756 to 117887758 1002 CpG island CpG island 14671
Tssr43004 4 117887247 to 117887254 7 - TSS region transcription start site region 43004
Tssr43005 4 117887267 to 117887278 11 - TSS region transcription start site region 43005
Tssr43006 4 117887279 to 117887290 11 - TSS region transcription start site region 43006
Tssr43007 4 117887292 to 117887353 61 - TSS region transcription start site region 43007
Dph2 4 117888643 to 117892003 3360 - protein coding gene DPH2 homolog
Cpgi14672 4 117891588 to 117892262 674 CpG island CpG island 14672
Tssr43008 4 117891994 to 117892040 46 - TSS region transcription start site region 43008