Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:117356588-118427262

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186 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf220 4 117271463 to 117497052 225589 - protein coding gene ring finger protein 220
Tssr38611 4 117367720 to 117367730 10 + TSS region transcription start site region 38611
Tssr42980 4 117375453 to 117375467 14 - TSS region transcription start site region 42980
Tssr42981 4 117375471 to 117375485 14 - TSS region transcription start site region 42981
Tssr42982 4 117375495 to 117375501 6 - TSS region transcription start site region 42982
Gm12828 4 117441726 to 117446497 4771 + antisense lncRNA gene predicted gene 12828
Tssr38612 4 117445798 to 117445814 16 + TSS region transcription start site region 38612
Tssr38613 4 117445823 to 117445835 12 + TSS region transcription start site region 38613
Tssr1276 4 117445851 to 117445859 8 + TSS region transcription start site region 1276
Tssr38614 4 117445983 to 117445987 4 + TSS region transcription start site region 38614
D4Mit122 4 117449635 to 117449736 101 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 122
Tssr42983 4 117474019 to 117474031 12 - TSS region transcription start site region 42983
D4Jpk1 4 117483155 to 117483274 119 DNA segment DNA segment, Chr 4, Japan, Kominami 1
Cpgi14662 4 117484089 to 117485400 1311 CpG island CpG island 14662
Tssr42984 4 117489939 to 117489958 19 - TSS region transcription start site region 42984
Cpgi14663 4 117493876 to 117497082 3206 CpG island CpG island 14663
Tssr42985 4 117494977 to 117494996 19 - TSS region transcription start site region 42985
Tssr42986 4 117495661 to 117495665 4 - TSS region transcription start site region 42986
Tssr38615 4 117496420 to 117496463 43 + TSS region transcription start site region 38615
Gm12827 4 117496452 to 117500602 4150 + lincRNA gene predicted gene 12827
Tssr42987 4 117496909 to 117496918 9 - TSS region transcription start site region 42987
Tssr42988 4 117496940 to 117496957 17 - TSS region transcription start site region 42988
Tssr42989 4 117497075 to 117497076 1 - TSS region transcription start site region 42989
Cpgi14664 4 117508788 to 117509042 254 CpG island CpG island 14664
Gm34669 4 117509361 to 117519599 10238 + lncRNA gene predicted gene, 34669
Gm12826 4 117513823 to 117514201 378 - pseudogene predicted gene 12826
D4Jcs23 4 117539922 to 117540199 277 DNA segment DNA segment, Chr 4, John C. Schimenti 23
Cpgi14665 4 117550110 to 117550893 783 CpG island CpG island 14665
Tssr38616 4 117550305 to 117550316 11 + TSS region transcription start site region 38616
Tssr38617 4 117550326 to 117550409 83 + TSS region transcription start site region 38617
Eri3 4 117550365 to 117674297 123932 + protein coding gene exoribonuclease 3
Tssr38618 4 117550657 to 117550691 34 + TSS region transcription start site region 38618
Tssr38619 4 117552952 to 117552967 15 + TSS region transcription start site region 38619
Tssr38620 4 117560472 to 117560476 4 + TSS region transcription start site region 38620
Tssr38621 4 117563830 to 117563834 4 + TSS region transcription start site region 38621
Tssr38622 4 117564603 to 117564642 39 + TSS region transcription start site region 38622
Tssr38623 4 117564807 to 117564825 18 + TSS region transcription start site region 38623
Gm25559 4 117570134 to 117570207 73 + miRNA gene predicted gene, 25559
Tssr38624 4 117585300 to 117585311 11 + TSS region transcription start site region 38624
Gm19192 4 117598836 to 117599393 557 + pseudogene predicted gene, 19192
Tssr38625 4 117609744 to 117609757 13 + TSS region transcription start site region 38625
Tssr38626 4 117610823 to 117610828 5 + TSS region transcription start site region 38626
Cpgi14666 4 117644997 to 117645195 198 CpG island CpG island 14666
Tssr1277 4 117649956 to 117649959 3 + TSS region transcription start site region 1277
D4Ertd361e 4 117660360 to 117660597 237 DNA segment DNA segment, Chr 4, ERATO Doi 361, expressed
Tssr38627 4 117673994 to 117674025 31 + TSS region transcription start site region 38627
Dmap1 4 117674681 to 117682273 7592 - protein coding gene DNA methyltransferase 1-associated protein 1
Cpgi14667 4 117681480 to 117682424 944 CpG island CpG island 14667
Tssr42990 4 117682216 to 117682225 9 - TSS region transcription start site region 42990
Tssr42991 4 117682233 to 117682279 46 - TSS region transcription start site region 42991
Gm34746 4 117699075 to 117704029 4954 + lncRNA gene predicted gene, 34746
Gm12840 4 117700188 to 117700923 735 + lincRNA gene predicted gene 12840
Gm12845 4 117724574 to 117725971 1397 + protein coding gene predicted gene 12845
Gm12844 4 117728718 to 117729299 581 - pseudogene predicted gene 12844
Klf17 4 117757836 to 117765648 7812 - protein coding gene Kruppel-like factor 17
Tssr42992 4 117765550 to 117765570 20 - TSS region transcription start site region 42992
Gm40232 4 117781698 to 117787137 5439 - lncRNA gene predicted gene, 40232
Tssr38628 4 117787251 to 117787262 11 + TSS region transcription start site region 38628
Tssr38629 4 117787268 to 117787284 16 + TSS region transcription start site region 38629
Tssr38630 4 117787290 to 117787301 11 + TSS region transcription start site region 38630
Gm12842 4 117825181 to 117825656 475 - pseudogene predicted gene 12842
Tssr42993 4 117825691 to 117825696 5 - TSS region transcription start site region 42993
Tssr38631 4 117835235 to 117835275 40 + TSS region transcription start site region 38631
Slc6a9 4 117835258 to 117869305 34047 + protein coding gene solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Cpgi14668 4 117835258 to 117836755 1497 CpG island CpG island 14668
Tssr38632 4 117835278 to 117835301 23 + TSS region transcription start site region 38632
Gm17114 4 117835299 to 117868558 33259 - lncRNA gene predicted gene 17114
Tssr38633 4 117835304 to 117835333 29 + TSS region transcription start site region 38633
Tssr38634 4 117835338 to 117835349 11 + TSS region transcription start site region 38634
Tssr38635 4 117835387 to 117835428 41 + TSS region transcription start site region 38635
Tssr42994 4 117835845 to 117835847 2 - TSS region transcription start site region 42994
Tssr38636 4 117849301 to 117849308 7 + TSS region transcription start site region 38636
Tssr38637 4 117849309 to 117849334 25 + TSS region transcription start site region 38637
Tssr38638 4 117849340 to 117849355 15 + TSS region transcription start site region 38638
Tssr38639 4 117849361 to 117849375 14 + TSS region transcription start site region 38639
Cpgi14669 4 117867798 to 117868197 399 CpG island CpG island 14669
Ccdc24 4 117869260 to 117872661 3401 - protein coding gene coiled-coil domain containing 24
Tssr42995 4 117871300 to 117871317 17 - TSS region transcription start site region 42995
Tssr42996 4 117871324 to 117871335 11 - TSS region transcription start site region 42996
Tssr42997 4 117872026 to 117872038 12 - TSS region transcription start site region 42997
Tssr42998 4 117872548 to 117872560 12 - TSS region transcription start site region 42998
Tssr42999 4 117872563 to 117872593 30 - TSS region transcription start site region 42999
Tssr43000 4 117872596 to 117872614 18 - TSS region transcription start site region 43000
Tssr43001 4 117872744 to 117872792 48 - TSS region transcription start site region 43001
B4galt2 4 117873000 to 117883482 10482 - protein coding gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2
Gm40233 4 117874528 to 117879336 4808 + lncRNA gene predicted gene, 40233
Cpgi14670 4 117882697 to 117883844 1147 CpG island CpG island 14670
Tssr43002 4 117883428 to 117883507 79 - TSS region transcription start site region 43002
Tssr38640 4 117883542 to 117883579 37 + TSS region transcription start site region 38640
Tssr38641 4 117883597 to 117883610 13 + TSS region transcription start site region 38641
Gm12841 4 117883621 to 117885995 2374 + antisense lncRNA gene predicted gene 12841
Atp6v0b 4 117884330 to 117887329 2999 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit B
Tssr43003 4 117884497 to 117884528 31 - TSS region transcription start site region 43003
Cpgi14671 4 117886756 to 117887758 1002 CpG island CpG island 14671
Tssr43004 4 117887247 to 117887254 7 - TSS region transcription start site region 43004
Tssr43005 4 117887267 to 117887278 11 - TSS region transcription start site region 43005
Tssr43006 4 117887279 to 117887290 11 - TSS region transcription start site region 43006
Tssr43007 4 117887292 to 117887353 61 - TSS region transcription start site region 43007
Dph2 4 117888643 to 117892003 3360 - protein coding gene DPH2 homolog
Cpgi14672 4 117891588 to 117892262 674 CpG island CpG island 14672
Tssr43008 4 117891994 to 117892040 46 - TSS region transcription start site region 43008
Ipo13 4 117894486 to 117914999 20513 - protein coding gene importin 13
Tssr43009 4 117904588 to 117904615 27 - TSS region transcription start site region 43009
Cpgi14673 4 117912029 to 117912332 303 CpG island CpG island 14673
Cpgi14674 4 117914304 to 117915513 1209 CpG island CpG island 14674
Tssr43010 4 117914701 to 117914712 11 - TSS region transcription start site region 43010
Tssr43011 4 117914940 to 117914957 17 - TSS region transcription start site region 43011
Tssr43012 4 117914968 to 117915018 50 - TSS region transcription start site region 43012
Tssr43013 4 117915036 to 117915054 18 - TSS region transcription start site region 43013
Tssr43014 4 117915129 to 117915175 46 - TSS region transcription start site region 43014
Tssr43015 4 117915193 to 117915198 5 - TSS region transcription start site region 43015
Artn 4 117926162 to 117929763 3601 - protein coding gene artemin
Cpgi14675 4 117926362 to 117927559 1197 CpG island CpG island 14675
Tssr43016 4 117926753 to 117926760 7 - TSS region transcription start site region 43016
Tssr43017 4 117926761 to 117926770 9 - TSS region transcription start site region 43017
Cpgi14676 4 117929379 to 117929975 596 CpG island CpG island 14676
Tssr43018 4 117929466 to 117929475 9 - TSS region transcription start site region 43018
Tssr43019 4 117929493 to 117929510 17 - TSS region transcription start site region 43019
Tssr43020 4 117929726 to 117929739 13 - TSS region transcription start site region 43020
Tssr43021 4 117929749 to 117929776 27 - TSS region transcription start site region 43021
St3gal3 4 117932154 to 118134914 202760 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 3
Tssr43022 4 117953575 to 117953583 8 - TSS region transcription start site region 43022
Tssr43023 4 117964721 to 117964739 18 - TSS region transcription start site region 43023
Tssr43024 4 117964744 to 117964770 26 - TSS region transcription start site region 43024
Tssr38642 4 117974982 to 117975003 21 + TSS region transcription start site region 38642
Tssr38643 4 117975027 to 117975040 13 + TSS region transcription start site region 38643
9530034E10Rik 4 117975036 to 117993972 18936 + antisense lncRNA gene RIKEN cDNA 9530034E10 gene
Tssr38644 4 117977595 to 117977606 11 + TSS region transcription start site region 38644
Tssr38645 4 117982968 to 117982979 11 + TSS region transcription start site region 38645
Tssr43025 4 117993970 to 117993976 6 - TSS region transcription start site region 43025
Tssr38646 4 117998627 to 117998636 9 + TSS region transcription start site region 38646
D4Dcr18 4 118001754 to 118001853 99 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 18
Tssr43026 4 118005892 to 118005935 43 - TSS region transcription start site region 43026
Tssr43027 4 118012489 to 118012492 3 - TSS region transcription start site region 43027
Tssr1278 4 118024592 to 118024593 1 - TSS region transcription start site region 1278
Tssr43028 4 118029199 to 118029238 39 - TSS region transcription start site region 43028
Tssr43029 4 118054734 to 118054755 21 - TSS region transcription start site region 43029
Tssr43030 4 118076777 to 118076818 41 - TSS region transcription start site region 43030
Tssr38647 4 118076990 to 118077019 29 + TSS region transcription start site region 38647
Tssr43031 4 118091750 to 118091799 49 - TSS region transcription start site region 43031
Tssr43032 4 118117702 to 118117709 7 - TSS region transcription start site region 43032
D4Mit57 4 118119230 to 118119356 126 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 57
Cpgi14677 4 118134338 to 118135368 1030 CpG island CpG island 14677
Tssr43033 4 118134673 to 118134687 14 - TSS region transcription start site region 43033
Tssr43034 4 118134801 to 118134812 11 - TSS region transcription start site region 43034
Tssr43035 4 118134869 to 118134962 93 - TSS region transcription start site region 43035
Kdm4a 4 118136957 to 118180043 43086 - protein coding gene lysine (K)-specific demethylase 4A
Tssr43036 4 118139009 to 118139020 11 - TSS region transcription start site region 43036
Tssr43037 4 118144279 to 118144293 14 - TSS region transcription start site region 43037
Tssr43038 4 118144479 to 118144492 13 - TSS region transcription start site region 43038
Gm23382 4 118164078 to 118164181 103 + snoRNA gene predicted gene, 23382
Cpgi14678 4 118172997 to 118173195 198 CpG island CpG island 14678
Cpgi14679 4 118179518 to 118180256 738 CpG island CpG island 14679
Tssr43039 4 118179628 to 118179682 54 - TSS region transcription start site region 43039
Tssr43040 4 118179954 to 118180035 81 - TSS region transcription start site region 43040
Tssr43041 4 118180043 to 118180054 11 - TSS region transcription start site region 43041
Ptprf 4 118208213 to 118291400 83187 - protein coding gene protein tyrosine phosphatase, receptor type, F
Mir7226 4 118210505 to 118210564 59 - miRNA gene microRNA 7226
Tssr43042 4 118229007 to 118229016 9 - TSS region transcription start site region 43042
Tssr38648 4 118229776 to 118229784 8 + TSS region transcription start site region 38648
Tssr43043 4 118231779 to 118231794 15 - TSS region transcription start site region 43043
Tssr43044 4 118248917 to 118248942 25 - TSS region transcription start site region 43044
Gm40235 4 118252250 to 118257481 5231 - lncRNA gene predicted gene, 40235
Cpgi14680 4 118260634 to 118261233 599 CpG island CpG island 14680
Tssr43045 4 118269730 to 118269737 7 - TSS region transcription start site region 43045
Tssr38649 4 118289878 to 118289890 12 + TSS region transcription start site region 38649
Cpgi14681 4 118289926 to 118291657 1731 CpG island CpG island 14681
Tssr43046 4 118291305 to 118291325 20 - TSS region transcription start site region 43046
Tssr43047 4 118291340 to 118291404 64 - TSS region transcription start site region 43047
Tssr43048 4 118291419 to 118291430 11 - TSS region transcription start site region 43048
Fgf23lq1 4 118300000 to 118300000 0 QTL FGF23 serum level QTL 1
Cpgi14682 4 118359712 to 118360705 993 CpG island CpG island 14682
Tssr38650 4 118359982 to 118360032 50 + TSS region transcription start site region 38650
Hyi 4 118359999 to 118362744 2745 + polymorphic pseudogene hydroxypyruvate isomerase (putative)
Tssr38651 4 118360048 to 118360057 9 + TSS region transcription start site region 38651
Tssr38652 4 118360071 to 118360082 11 + TSS region transcription start site region 38652
Szt2 4 118362743 to 118409273 46530 - protein coding gene seizure threshold 2
Tssr38653 4 118375496 to 118375502 6 + TSS region transcription start site region 38653
Cpgi14683 4 118408880 to 118409822 942 CpG island CpG island 14683
Tssr43049 4 118409219 to 118409282 63 - TSS region transcription start site region 43049
Tssr38654 4 118409331 to 118409374 43 + TSS region transcription start site region 38654
Med8 4 118409337 to 118415782 6445 + protein coding gene mediator complex subunit 8
Tssr1279 4 118409385 to 118409392 7 + TSS region transcription start site region 1279
Tssr38655 4 118410870 to 118410882 12 + TSS region transcription start site region 38655
Tssr38656 4 118411736 to 118411758 22 + TSS region transcription start site region 38656
Tssr38657 4 118426895 to 118426898 3 + TSS region transcription start site region 38657