Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:117262720-117472730

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmem53 4 117251951 to 117268582 16631 + protein coding gene transmembrane protein 53
Cpgi14657 4 117267956 to 117268282 326 CpG island CpG island 14657
Rnf220 4 117271463 to 117497052 225589 - protein coding gene ring finger protein 220
Tssr1275 4 117272150 to 117272162 12 + TSS region transcription start site region 1275
Tssr42974 4 117277640 to 117277652 12 - TSS region transcription start site region 42974
Tssr42975 4 117277656 to 117277669 13 - TSS region transcription start site region 42975
Tssr42976 4 117277676 to 117277683 7 - TSS region transcription start site region 42976
Tssr42977 4 117277712 to 117277723 11 - TSS region transcription start site region 42977
Tssr42978 4 117288525 to 117288572 47 - TSS region transcription start site region 42978
Cpgi14658 4 117288677 to 117289840 1163 CpG island CpG island 14658
Tssr42979 4 117289435 to 117289455 20 - TSS region transcription start site region 42979
Gm12843 4 117295817 to 117297725 1908 + antisense lncRNA gene predicted gene 12843
Cpgi14659 4 117303598 to 117304790 1192 CpG island CpG island 14659
Gm40231 4 117311744 to 117319430 7686 - lncRNA gene predicted gene, 40231
Cpgi14660 4 117312325 to 117312831 506 CpG island CpG island 14660
Cpgi14661 4 117317960 to 117318204 244 CpG island CpG island 14661
Cfq1 4 117320449 to 120250558 2930109 QTL conditioned fear QTL 1
C030012D19Rik 4 117328087 to 117329018 931 unclassified gene RIKEN cDNA C030012D19 gene
Tssr38611 4 117367720 to 117367730 10 + TSS region transcription start site region 38611
Tssr42980 4 117375453 to 117375467 14 - TSS region transcription start site region 42980
Tssr42981 4 117375471 to 117375485 14 - TSS region transcription start site region 42981
Tssr42982 4 117375495 to 117375501 6 - TSS region transcription start site region 42982
Gm12828 4 117441726 to 117446497 4771 + antisense lncRNA gene predicted gene 12828
Tssr38612 4 117445798 to 117445814 16 + TSS region transcription start site region 38612
Tssr38613 4 117445823 to 117445835 12 + TSS region transcription start site region 38613
Tssr1276 4 117445851 to 117445859 8 + TSS region transcription start site region 1276
Tssr38614 4 117445983 to 117445987 4 + TSS region transcription start site region 38614
D4Mit122 4 117449635 to 117449736 101 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 122