MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 4:117261744-117369430

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tmem53	4	117251951 to 117268582	16631	+	protein coding gene	transmembrane protein 53
Cpgi14657	4	117267956 to 117268282	326		CpG island	CpG island 14657
Rnf220	4	117271463 to 117497052	225589	-	protein coding gene	ring finger protein 220
Tssr1275	4	117272150 to 117272162	12	+	TSS region	transcription start site region 1275
Tssr42974	4	117277640 to 117277652	12	-	TSS region	transcription start site region 42974
Tssr42975	4	117277656 to 117277669	13	-	TSS region	transcription start site region 42975
Tssr42976	4	117277676 to 117277683	7	-	TSS region	transcription start site region 42976
Tssr42977	4	117277712 to 117277723	11	-	TSS region	transcription start site region 42977
Tssr42978	4	117288525 to 117288572	47	-	TSS region	transcription start site region 42978
Cpgi14658	4	117288677 to 117289840	1163		CpG island	CpG island 14658
Tssr42979	4	117289435 to 117289455	20	-	TSS region	transcription start site region 42979
Gm12843	4	117295817 to 117297725	1908	+	antisense lncRNA gene	predicted gene 12843
Cpgi14659	4	117303598 to 117304790	1192		CpG island	CpG island 14659
Gm40231	4	117311744 to 117319430	7686	-	lncRNA gene	predicted gene, 40231
Cpgi14660	4	117312325 to 117312831	506		CpG island	CpG island 14660
Cpgi14661	4	117317960 to 117318204	244		CpG island	CpG island 14661
Cfq1	4	117320449 to 120250558	2930109		QTL	conditioned fear QTL 1
C030012D19Rik	4	117328087 to 117329018	931		unclassified gene	RIKEN cDNA C030012D19 gene
Tssr38611	4	117367720 to 117367730	10	+	TSS region	transcription start site region 38611