Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:117131452-117865602

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plk3 4 117128655 to 117133963 5308 - protein coding gene polo like kinase 3
Tssr42952 4 117131437 to 117131468 31 - TSS region transcription start site region 42952
Tssr42953 4 117131494 to 117131498 4 - TSS region transcription start site region 42953
Cpgi14650 4 117133179 to 117134218 1039 CpG island CpG island 14650
Tssr42954 4 117133953 to 117133969 16 - TSS region transcription start site region 42954
Tssr1274 4 117134134 to 117134158 24 + TSS region transcription start site region 1274
Best4-ps 4 117145257 to 117148285 3028 + pseudogene bestrophin 4, pseudogene
Cpgi14651 4 117146116 to 117146326 210 CpG island CpG island 14651
Tssr42955 4 117148223 to 117148231 8 - TSS region transcription start site region 42955
Cpgi14652 4 117148840 to 117149182 342 CpG island CpG island 14652
Tssr38606 4 117148912 to 117148914 2 + TSS region transcription start site region 38606
Gm13015 4 117148923 to 117149126 203 + pseudogene predicted gene 13015
Tssr38607 4 117153826 to 117153838 12 + TSS region transcription start site region 38607
Rps8 4 117153836 to 117156132 2296 - protein coding gene ribosomal protein S8
Gm22980 4 117154093 to 117154162 69 - snoRNA gene predicted gene, 22980
Snord38a 4 117154516 to 117154574 58 - snoRNA gene small nucleolar RNA, C/D box 38A
Gm26330 4 117155186 to 117155289 103 - snoRNA gene predicted gene, 26330
Cpgi14653 4 117155357 to 117156328 971 CpG island CpG island 14653
Snord55 4 117155771 to 117155848 77 - snoRNA gene small nucleolar RNA, C/D box 55
Tssr42956 4 117155844 to 117155848 4 - TSS region transcription start site region 42956
Tssr42957 4 117156075 to 117156085 10 - TSS region transcription start site region 42957
Tssr42958 4 117156122 to 117156143 21 - TSS region transcription start site region 42958
Tssr42959 4 117156144 to 117156174 30 - TSS region transcription start site region 42959
Tssr42960 4 117156185 to 117156197 12 - TSS region transcription start site region 42960
Tssr42961 4 117156199 to 117156227 28 - TSS region transcription start site region 42961
Gm22398 4 117158309 to 117158433 124 - miRNA gene predicted gene, 22398
Kif2c 4 117159633 to 117182624 22991 - protein coding gene kinesin family member 2C
Tssr42962 4 117178713 to 117178718 5 - TSS region transcription start site region 42962
Tssr42963 4 117178726 to 117178754 28 - TSS region transcription start site region 42963
Tssr42964 4 117178758 to 117178779 21 - TSS region transcription start site region 42964
Cpgi14654 4 117182160 to 117182927 767 CpG island CpG island 14654
Tssr42965 4 117182537 to 117182603 66 - TSS region transcription start site region 42965
Tssr42966 4 117182623 to 117182636 13 - TSS region transcription start site region 42966
Tssr42967 4 117182949 to 117182951 2 - TSS region transcription start site region 42967
Gm25099 4 117189942 to 117190057 115 + snRNA gene predicted gene, 25099
Tssr42968 4 117192101 to 117192120 19 - TSS region transcription start site region 42968
Gm23143 4 117202528 to 117202643 115 + snRNA gene predicted gene, 23143
Gt(pU21)107Imeg 4 117204988 to 117205363 375 unclassified gene gene trap 107, Institute of Molecular Embryology and Genetics
Tssr38608 4 117210825 to 117210832 7 + TSS region transcription start site region 38608
Gm23287 4 117210844 to 117210959 115 + snRNA gene predicted gene, 23287
Armh1 4 117213326 to 117251973 38647 - protein coding gene armadillo-like helical domain containing 1
1700012C08Rik 4 117213334 to 117213782 448 - unclassified non-coding RNA gene RIKEN cDNA 1700012C08 gene
D4Mit37 4 117214774 to 117215009 235 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 37
Skts7 4 117214774 to 117215009 235 QTL skin tumor susceptibility 7
Fecq2 4 117214774 to 117215009 235 QTL fecundity QTL 2
Iva1 4 117214774 to 120866006 3651232 QTL isovaleric acid smelling 1
Mvwf3 4 117215009 to 14010457 -103204552 QTL modifier of von Willebrand factor 3
Cpgi14655 4 117229701 to 117229870 169 CpG island CpG island 14655
Cpgi14656 4 117251568 to 117252221 653 CpG island CpG island 14656
Tssr42969 4 117251773 to 117251807 34 - TSS region transcription start site region 42969
Tssr42970 4 117251810 to 117251831 21 - TSS region transcription start site region 42970
Tssr42971 4 117251839 to 117251874 35 - TSS region transcription start site region 42971
Tssr42972 4 117251879 to 117251891 12 - TSS region transcription start site region 42972
Tmem53 4 117251951 to 117268582 16631 + protein coding gene transmembrane protein 53
Tssr38609 4 117251977 to 117252004 27 + TSS region transcription start site region 38609
Tssr38610 4 117252010 to 117252057 47 + TSS region transcription start site region 38610
Tssr42973 4 117252232 to 117252255 23 - TSS region transcription start site region 42973
Cpgi14657 4 117267956 to 117268282 326 CpG island CpG island 14657
Rnf220 4 117271463 to 117497052 225589 - protein coding gene ring finger protein 220
Tssr1275 4 117272150 to 117272162 12 + TSS region transcription start site region 1275
Tssr42974 4 117277640 to 117277652 12 - TSS region transcription start site region 42974
Tssr42975 4 117277656 to 117277669 13 - TSS region transcription start site region 42975
Tssr42976 4 117277676 to 117277683 7 - TSS region transcription start site region 42976
Tssr42977 4 117277712 to 117277723 11 - TSS region transcription start site region 42977
Tssr42978 4 117288525 to 117288572 47 - TSS region transcription start site region 42978
Cpgi14658 4 117288677 to 117289840 1163 CpG island CpG island 14658
Tssr42979 4 117289435 to 117289455 20 - TSS region transcription start site region 42979
Gm12843 4 117295817 to 117297725 1908 + antisense lncRNA gene predicted gene 12843
Cpgi14659 4 117303598 to 117304790 1192 CpG island CpG island 14659
Gm40231 4 117311744 to 117319430 7686 - lncRNA gene predicted gene, 40231
Cpgi14660 4 117312325 to 117312831 506 CpG island CpG island 14660
Cpgi14661 4 117317960 to 117318204 244 CpG island CpG island 14661
Cfq1 4 117320449 to 120250558 2930109 QTL conditioned fear QTL 1
C030012D19Rik 4 117328087 to 117329018 931 unclassified gene RIKEN cDNA C030012D19 gene
Tssr38611 4 117367720 to 117367730 10 + TSS region transcription start site region 38611
Tssr42980 4 117375453 to 117375467 14 - TSS region transcription start site region 42980
Tssr42981 4 117375471 to 117375485 14 - TSS region transcription start site region 42981
Tssr42982 4 117375495 to 117375501 6 - TSS region transcription start site region 42982
Gm12828 4 117441726 to 117446497 4771 + antisense lncRNA gene predicted gene 12828
Tssr38612 4 117445798 to 117445814 16 + TSS region transcription start site region 38612
Tssr38613 4 117445823 to 117445835 12 + TSS region transcription start site region 38613
Tssr1276 4 117445851 to 117445859 8 + TSS region transcription start site region 1276
Tssr38614 4 117445983 to 117445987 4 + TSS region transcription start site region 38614
D4Mit122 4 117449635 to 117449736 101 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 122
Tssr42983 4 117474019 to 117474031 12 - TSS region transcription start site region 42983
D4Jpk1 4 117483155 to 117483274 119 DNA segment DNA segment, Chr 4, Japan, Kominami 1
Cpgi14662 4 117484089 to 117485400 1311 CpG island CpG island 14662
Tssr42984 4 117489939 to 117489958 19 - TSS region transcription start site region 42984
Cpgi14663 4 117493876 to 117497082 3206 CpG island CpG island 14663
Tssr42985 4 117494977 to 117494996 19 - TSS region transcription start site region 42985
Tssr42986 4 117495661 to 117495665 4 - TSS region transcription start site region 42986
Tssr38615 4 117496420 to 117496463 43 + TSS region transcription start site region 38615
Gm12827 4 117496452 to 117500602 4150 + lincRNA gene predicted gene 12827
Tssr42987 4 117496909 to 117496918 9 - TSS region transcription start site region 42987
Tssr42988 4 117496940 to 117496957 17 - TSS region transcription start site region 42988
Tssr42989 4 117497075 to 117497076 1 - TSS region transcription start site region 42989
Cpgi14664 4 117508788 to 117509042 254 CpG island CpG island 14664
Gm34669 4 117509361 to 117519599 10238 + lncRNA gene predicted gene, 34669
Gm12826 4 117513823 to 117514201 378 - pseudogene predicted gene 12826
D4Jcs23 4 117539922 to 117540199 277 DNA segment DNA segment, Chr 4, John C. Schimenti 23
Cpgi14665 4 117550110 to 117550893 783 CpG island CpG island 14665
Tssr38616 4 117550305 to 117550316 11 + TSS region transcription start site region 38616
Tssr38617 4 117550326 to 117550409 83 + TSS region transcription start site region 38617
Eri3 4 117550365 to 117674297 123932 + protein coding gene exoribonuclease 3
Tssr38618 4 117550657 to 117550691 34 + TSS region transcription start site region 38618
Tssr38619 4 117552952 to 117552967 15 + TSS region transcription start site region 38619
Tssr38620 4 117560472 to 117560476 4 + TSS region transcription start site region 38620
Tssr38621 4 117563830 to 117563834 4 + TSS region transcription start site region 38621
Tssr38622 4 117564603 to 117564642 39 + TSS region transcription start site region 38622
Tssr38623 4 117564807 to 117564825 18 + TSS region transcription start site region 38623
Gm25559 4 117570134 to 117570207 73 + miRNA gene predicted gene, 25559
Tssr38624 4 117585300 to 117585311 11 + TSS region transcription start site region 38624
Gm19192 4 117598836 to 117599393 557 + pseudogene predicted gene, 19192
Tssr38625 4 117609744 to 117609757 13 + TSS region transcription start site region 38625
Tssr38626 4 117610823 to 117610828 5 + TSS region transcription start site region 38626
Cpgi14666 4 117644997 to 117645195 198 CpG island CpG island 14666
Tssr1277 4 117649956 to 117649959 3 + TSS region transcription start site region 1277
D4Ertd361e 4 117660360 to 117660597 237 DNA segment DNA segment, Chr 4, ERATO Doi 361, expressed
Tssr38627 4 117673994 to 117674025 31 + TSS region transcription start site region 38627
Dmap1 4 117674681 to 117682273 7592 - protein coding gene DNA methyltransferase 1-associated protein 1
Cpgi14667 4 117681480 to 117682424 944 CpG island CpG island 14667
Tssr42990 4 117682216 to 117682225 9 - TSS region transcription start site region 42990
Tssr42991 4 117682233 to 117682279 46 - TSS region transcription start site region 42991
Gm34746 4 117699075 to 117704029 4954 + lncRNA gene predicted gene, 34746
Gm12840 4 117700188 to 117700923 735 + lincRNA gene predicted gene 12840
Gm12845 4 117724574 to 117725971 1397 + protein coding gene predicted gene 12845
Gm12844 4 117728718 to 117729299 581 - pseudogene predicted gene 12844
Klf17 4 117757836 to 117765648 7812 - protein coding gene Kruppel-like factor 17
Tssr42992 4 117765550 to 117765570 20 - TSS region transcription start site region 42992
Gm40232 4 117781698 to 117787137 5439 - lncRNA gene predicted gene, 40232
Tssr38628 4 117787251 to 117787262 11 + TSS region transcription start site region 38628
Tssr38629 4 117787268 to 117787284 16 + TSS region transcription start site region 38629
Tssr38630 4 117787290 to 117787301 11 + TSS region transcription start site region 38630
Gm12842 4 117825181 to 117825656 475 - pseudogene predicted gene 12842
Tssr42993 4 117825691 to 117825696 5 - TSS region transcription start site region 42993
Tssr38631 4 117835235 to 117835275 40 + TSS region transcription start site region 38631
Slc6a9 4 117835258 to 117869305 34047 + protein coding gene solute carrier family 6 (neurotransmitter transporter, glycine), member 9
Cpgi14668 4 117835258 to 117836755 1497 CpG island CpG island 14668
Tssr38632 4 117835278 to 117835301 23 + TSS region transcription start site region 38632
Gm17114 4 117835299 to 117868558 33259 - lncRNA gene predicted gene 17114
Tssr38633 4 117835304 to 117835333 29 + TSS region transcription start site region 38633
Tssr38634 4 117835338 to 117835349 11 + TSS region transcription start site region 38634
Tssr38635 4 117835387 to 117835428 41 + TSS region transcription start site region 38635
Tssr42994 4 117835845 to 117835847 2 - TSS region transcription start site region 42994
Tssr38636 4 117849301 to 117849308 7 + TSS region transcription start site region 38636
Tssr38637 4 117849309 to 117849334 25 + TSS region transcription start site region 38637
Tssr38638 4 117849340 to 117849355 15 + TSS region transcription start site region 38638
Tssr38639 4 117849361 to 117849375 14 + TSS region transcription start site region 38639