Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:116879440-117159452

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zswim5 4 116877402 to 116989105 111703 + protein coding gene zinc finger SWIM-type containing 5
Gm26355 4 116904637 to 116904741 104 + snRNA gene predicted gene, 26355
Gm25435 4 116915227 to 116915493 266 + unclassified non-coding RNA gene predicted gene, 25435
Gm22092 4 116922384 to 116922490 106 - snRNA gene predicted gene, 22092
Gm12998 4 116945786 to 116946515 729 - pseudogene predicted gene 12998
Urod 4 116989965 to 116994413 4448 - protein coding gene uroporphyrinogen decarboxylase
Tssr42934 4 116990153 to 116990197 44 - TSS region transcription start site region 42934
Tssr42935 4 116990359 to 116990381 22 - TSS region transcription start site region 42935
Tssr42936 4 116992561 to 116992564 3 - TSS region transcription start site region 42936
Tssr42937 4 116993624 to 116993634 10 - TSS region transcription start site region 42937
Tssr42938 4 116993687 to 116993703 16 - TSS region transcription start site region 42938
Tssr42939 4 116993739 to 116993754 15 - TSS region transcription start site region 42939
Cpgi14645 4 116994105 to 116994413 308 CpG island CpG island 14645
Tssr42940 4 116994354 to 116994372 18 - TSS region transcription start site region 42940
Tssr42941 4 116994374 to 116994385 11 - TSS region transcription start site region 42941
Cpgi14646 4 116995305 to 116996257 952 CpG island CpG island 14646
Tssr38587 4 116995306 to 116995342 36 + TSS region transcription start site region 38587
Hectd3 4 116995317 to 117005277 9960 + protein coding gene HECT domain E3 ubiquitin protein ligase 3
Tssr38588 4 116995348 to 116995370 22 + TSS region transcription start site region 38588
Tssr38589 4 116995375 to 116995384 9 + TSS region transcription start site region 38589
1700021J08Rik 4 117002166 to 117003012 846 - antisense lncRNA gene RIKEN cDNA 1700021J08 gene
Tssr42942 4 117003006 to 117003035 29 - TSS region transcription start site region 42942
Gm12997 4 117015211 to 117015753 542 - pseudogene predicted gene 12997
Cpgi14647 4 117019146 to 117019880 734 CpG island CpG island 14647
Eif2b3 4 117019399 to 117086852 67453 + protein coding gene eukaryotic translation initiation factor 2B, subunit 3
Tssr38590 4 117019400 to 117019437 37 + TSS region transcription start site region 38590
Tssr38591 4 117019440 to 117019452 12 + TSS region transcription start site region 38591
Gm22335 4 117027211 to 117027309 98 + snRNA gene predicted gene, 22335
Tssr38592 4 117068093 to 117068118 25 + TSS region transcription start site region 38592
Cpgi14648 4 117095741 to 117096430 689 CpG island CpG island 14648
Tssr38593 4 117096031 to 117096042 11 + TSS region transcription start site region 38593
Tssr38594 4 117096049 to 117096083 34 + TSS region transcription start site region 38594
Ptch2 4 117096075 to 117116101 20026 + protein coding gene patched 2
Tssr38595 4 117096796 to 117096807 11 + TSS region transcription start site region 38595
Tssr38596 4 117113023 to 117113026 3 + TSS region transcription start site region 38596
Btbd19 4 117119219 to 117125725 6506 - protein coding gene BTB (POZ) domain containing 19
Cpgi14649 4 117120291 to 117121426 1135 CpG island CpG island 14649
Tssr42943 4 117120297 to 117120306 9 - TSS region transcription start site region 42943
Tssr42944 4 117120331 to 117120342 11 - TSS region transcription start site region 42944
Tssr42945 4 117120454 to 117120469 15 - TSS region transcription start site region 42945
Tssr38597 4 117120592 to 117120606 14 + TSS region transcription start site region 38597
Tssr38598 4 117120720 to 117120739 19 + TSS region transcription start site region 38598
Tssr38599 4 117120740 to 117120751 11 + TSS region transcription start site region 38599
Tssr42946 4 117121241 to 117121248 7 - TSS region transcription start site region 42946
Tssr42947 4 117121255 to 117121285 30 - TSS region transcription start site region 42947
Tssr42948 4 117121286 to 117121318 32 - TSS region transcription start site region 42948
Tssr42949 4 117122315 to 117122353 38 - TSS region transcription start site region 42949
Tssr38600 4 117124527 to 117124551 24 + TSS region transcription start site region 38600
Tssr38601 4 117124660 to 117124677 17 + TSS region transcription start site region 38601
Tssr38602 4 117124933 to 117124981 48 + TSS region transcription start site region 38602
Tssr42950 4 117125636 to 117125683 47 - TSS region transcription start site region 42950
Tssr42951 4 117126054 to 117126074 20 - TSS region transcription start site region 42951
Tssr38603 4 117126767 to 117126774 7 + TSS region transcription start site region 38603
Tssr38604 4 117126776 to 117126797 21 + TSS region transcription start site region 38604
Tctex1d4 4 117126794 to 117128738 1944 + protein coding gene Tctex1 domain containing 4
Tssr38605 4 117126800 to 117126818 18 + TSS region transcription start site region 38605
Plk3 4 117128655 to 117133963 5308 - protein coding gene polo like kinase 3
Tssr42952 4 117131437 to 117131468 31 - TSS region transcription start site region 42952
Tssr42953 4 117131494 to 117131498 4 - TSS region transcription start site region 42953
Cpgi14650 4 117133179 to 117134218 1039 CpG island CpG island 14650
Tssr42954 4 117133953 to 117133969 16 - TSS region transcription start site region 42954
Tssr1274 4 117134134 to 117134158 24 + TSS region transcription start site region 1274
Best4-ps 4 117145257 to 117148285 3028 + pseudogene bestrophin 4, pseudogene
Cpgi14651 4 117146116 to 117146326 210 CpG island CpG island 14651
Tssr42955 4 117148223 to 117148231 8 - TSS region transcription start site region 42955
Cpgi14652 4 117148840 to 117149182 342 CpG island CpG island 14652
Tssr38606 4 117148912 to 117148914 2 + TSS region transcription start site region 38606
Gm13015 4 117148923 to 117149126 203 + pseudogene predicted gene 13015
Tssr38607 4 117153826 to 117153838 12 + TSS region transcription start site region 38607
Rps8 4 117153836 to 117156132 2296 - protein coding gene ribosomal protein S8
Gm22980 4 117154093 to 117154162 69 - snoRNA gene predicted gene, 22980
Snord38a 4 117154516 to 117154574 58 - snoRNA gene small nucleolar RNA, C/D box 38A
Gm26330 4 117155186 to 117155289 103 - snoRNA gene predicted gene, 26330
Cpgi14653 4 117155357 to 117156328 971 CpG island CpG island 14653
Snord55 4 117155771 to 117155848 77 - snoRNA gene small nucleolar RNA, C/D box 55
Tssr42956 4 117155844 to 117155848 4 - TSS region transcription start site region 42956
Tssr42957 4 117156075 to 117156085 10 - TSS region transcription start site region 42957
Tssr42958 4 117156122 to 117156143 21 - TSS region transcription start site region 42958
Tssr42959 4 117156144 to 117156174 30 - TSS region transcription start site region 42959
Tssr42960 4 117156185 to 117156197 12 - TSS region transcription start site region 42960
Tssr42961 4 117156199 to 117156227 28 - TSS region transcription start site region 42961
Gm22398 4 117158309 to 117158433 124 - miRNA gene predicted gene, 22398