Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:116877561-117107564

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14644 4 116876678 to 116878198 1520 CpG island CpG island 14644
Zswim5 4 116877402 to 116989105 111703 + protein coding gene zinc finger SWIM-type containing 5
Gm26355 4 116904637 to 116904741 104 + snRNA gene predicted gene, 26355
Gm25435 4 116915227 to 116915493 266 + unclassified non-coding RNA gene predicted gene, 25435
Gm22092 4 116922384 to 116922490 106 - snRNA gene predicted gene, 22092
Gm12998 4 116945786 to 116946515 729 - pseudogene predicted gene 12998
Urod 4 116989965 to 116994413 4448 - protein coding gene uroporphyrinogen decarboxylase
Tssr42934 4 116990153 to 116990197 44 - TSS region transcription start site region 42934
Tssr42935 4 116990359 to 116990381 22 - TSS region transcription start site region 42935
Tssr42936 4 116992561 to 116992564 3 - TSS region transcription start site region 42936
Tssr42937 4 116993624 to 116993634 10 - TSS region transcription start site region 42937
Tssr42938 4 116993687 to 116993703 16 - TSS region transcription start site region 42938
Tssr42939 4 116993739 to 116993754 15 - TSS region transcription start site region 42939
Cpgi14645 4 116994105 to 116994413 308 CpG island CpG island 14645
Tssr42940 4 116994354 to 116994372 18 - TSS region transcription start site region 42940
Tssr42941 4 116994374 to 116994385 11 - TSS region transcription start site region 42941
Cpgi14646 4 116995305 to 116996257 952 CpG island CpG island 14646
Tssr38587 4 116995306 to 116995342 36 + TSS region transcription start site region 38587
Hectd3 4 116995317 to 117005277 9960 + protein coding gene HECT domain E3 ubiquitin protein ligase 3
Tssr38588 4 116995348 to 116995370 22 + TSS region transcription start site region 38588
Tssr38589 4 116995375 to 116995384 9 + TSS region transcription start site region 38589
1700021J08Rik 4 117002166 to 117003012 846 - antisense lncRNA gene RIKEN cDNA 1700021J08 gene
Tssr42942 4 117003006 to 117003035 29 - TSS region transcription start site region 42942
Gm12997 4 117015211 to 117015753 542 - pseudogene predicted gene 12997
Cpgi14647 4 117019146 to 117019880 734 CpG island CpG island 14647
Eif2b3 4 117019399 to 117086852 67453 + protein coding gene eukaryotic translation initiation factor 2B, subunit 3
Tssr38590 4 117019400 to 117019437 37 + TSS region transcription start site region 38590
Tssr38591 4 117019440 to 117019452 12 + TSS region transcription start site region 38591
Gm22335 4 117027211 to 117027309 98 + snRNA gene predicted gene, 22335
Tssr38592 4 117068093 to 117068118 25 + TSS region transcription start site region 38592
Cpgi14648 4 117095741 to 117096430 689 CpG island CpG island 14648
Tssr38593 4 117096031 to 117096042 11 + TSS region transcription start site region 38593
Tssr38594 4 117096049 to 117096083 34 + TSS region transcription start site region 38594
Ptch2 4 117096075 to 117116101 20026 + protein coding gene patched 2
Tssr38595 4 117096796 to 117096807 11 + TSS region transcription start site region 38595