Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:116799637-117009741

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tesk2 4 116720907 to 116804248 83341 + protein coding gene testis-specific kinase 2
Toe1 4 116804003 to 116807635 3632 - protein coding gene target of EGR1, member 1 (nuclear)
Cpgi14641 4 116807159 to 116808046 887 CpG island CpG island 14641
Tssr42927 4 116807532 to 116807573 41 - TSS region transcription start site region 42927
Tssr42928 4 116807574 to 116807617 43 - TSS region transcription start site region 42928
Tssr38583 4 116807714 to 116807726 12 + TSS region transcription start site region 38583
Mutyh 4 116807723 to 116819440 11717 + protein coding gene mutY DNA glycosylase
Tssr38584 4 116807728 to 116807751 23 + TSS region transcription start site region 38584
Hpdl 4 116819907 to 116821508 1601 - protein coding gene 4-hydroxyphenylpyruvate dioxygenase-like
Cpgi14642 4 116820552 to 116821655 1103 CpG island CpG island 14642
Tssr42929 4 116820880 to 116820887 7 - TSS region transcription start site region 42929
Tssr42930 4 116820905 to 116820906 1 - TSS region transcription start site region 42930
Tssr42931 4 116821472 to 116821487 15 - TSS region transcription start site region 42931
Tssr42932 4 116821488 to 116821499 11 - TSS region transcription start site region 42932
Tssr42933 4 116821501 to 116821521 20 - TSS region transcription start site region 42933
Cpgi14643 4 116824537 to 116824984 447 CpG island CpG island 14643
Gm12996 4 116824903 to 116830603 5700 + antisense lncRNA gene predicted gene 12996
Rpl36-ps8 4 116839907 to 116840221 314 - pseudogene ribosomal protein L36, pseudogene 8
Gm12994 4 116852664 to 116853110 446 + pseudogene predicted gene 12994
Gm12993 4 116874588 to 116875465 877 - pseudogene predicted gene 12993
Cpgi14644 4 116876678 to 116878198 1520 CpG island CpG island 14644
Tssr38585 4 116877237 to 116877260 23 + TSS region transcription start site region 38585
Zswim5 4 116877402 to 116989105 111703 + protein coding gene zinc finger SWIM-type containing 5
Tssr38586 4 116877427 to 116877453 26 + TSS region transcription start site region 38586
Gm26355 4 116904637 to 116904741 104 + snRNA gene predicted gene, 26355
Gm25435 4 116915227 to 116915493 266 + unclassified non-coding RNA gene predicted gene, 25435
Gm22092 4 116922384 to 116922490 106 - snRNA gene predicted gene, 22092
Gm12998 4 116945786 to 116946515 729 - pseudogene predicted gene 12998
Urod 4 116989965 to 116994413 4448 - protein coding gene uroporphyrinogen decarboxylase
Tssr42934 4 116990153 to 116990197 44 - TSS region transcription start site region 42934
Tssr42935 4 116990359 to 116990381 22 - TSS region transcription start site region 42935
Tssr42936 4 116992561 to 116992564 3 - TSS region transcription start site region 42936
Tssr42937 4 116993624 to 116993634 10 - TSS region transcription start site region 42937
Tssr42938 4 116993687 to 116993703 16 - TSS region transcription start site region 42938
Tssr42939 4 116993739 to 116993754 15 - TSS region transcription start site region 42939
Cpgi14645 4 116994105 to 116994413 308 CpG island CpG island 14645
Tssr42940 4 116994354 to 116994372 18 - TSS region transcription start site region 42940
Tssr42941 4 116994374 to 116994385 11 - TSS region transcription start site region 42941
Cpgi14646 4 116995305 to 116996257 952 CpG island CpG island 14646
Tssr38587 4 116995306 to 116995342 36 + TSS region transcription start site region 38587
Hectd3 4 116995317 to 117005277 9960 + protein coding gene HECT domain E3 ubiquitin protein ligase 3
Tssr38588 4 116995348 to 116995370 22 + TSS region transcription start site region 38588
Tssr38589 4 116995375 to 116995384 9 + TSS region transcription start site region 38589
1700021J08Rik 4 117002166 to 117003012 846 - antisense lncRNA gene RIKEN cDNA 1700021J08 gene
Tssr42942 4 117003006 to 117003035 29 - TSS region transcription start site region 42942