Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:116708953-117558969

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc163 4 116708583 to 116715104 6521 + protein coding gene coiled-coil domain containing 163
Tssr38579 4 116709234 to 116709239 5 + TSS region transcription start site region 38579
Tssr38580 4 116711901 to 116711905 4 + TSS region transcription start site region 38580
Cpgi14640 4 116720794 to 116721440 646 CpG island CpG island 14640
Tesk2 4 116720907 to 116804248 83341 + protein coding gene testis-specific kinase 2
Tssr38581 4 116720920 to 116721004 84 + TSS region transcription start site region 38581
Tssr38582 4 116721067 to 116721078 11 + TSS region transcription start site region 38582
Gm27688 4 116725899 to 116725989 90 + unclassified non-coding RNA gene predicted gene, 27688
D4Dcr17 4 116796039 to 116796142 103 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 17
Toe1 4 116804003 to 116807635 3632 - protein coding gene target of EGR1, member 1 (nuclear)
Cpgi14641 4 116807159 to 116808046 887 CpG island CpG island 14641
Tssr42927 4 116807532 to 116807573 41 - TSS region transcription start site region 42927
Tssr42928 4 116807574 to 116807617 43 - TSS region transcription start site region 42928
Tssr38583 4 116807714 to 116807726 12 + TSS region transcription start site region 38583
Mutyh 4 116807723 to 116819440 11717 + protein coding gene mutY DNA glycosylase
Tssr38584 4 116807728 to 116807751 23 + TSS region transcription start site region 38584
Hpdl 4 116819907 to 116821508 1601 - protein coding gene 4-hydroxyphenylpyruvate dioxygenase-like
Cpgi14642 4 116820552 to 116821655 1103 CpG island CpG island 14642
Tssr42929 4 116820880 to 116820887 7 - TSS region transcription start site region 42929
Tssr42930 4 116820905 to 116820906 1 - TSS region transcription start site region 42930
Tssr42931 4 116821472 to 116821487 15 - TSS region transcription start site region 42931
Tssr42932 4 116821488 to 116821499 11 - TSS region transcription start site region 42932
Tssr42933 4 116821501 to 116821521 20 - TSS region transcription start site region 42933
Cpgi14643 4 116824537 to 116824984 447 CpG island CpG island 14643
Gm12996 4 116824903 to 116830603 5700 + antisense lncRNA gene predicted gene 12996
Rpl36-ps8 4 116839907 to 116840221 314 - pseudogene ribosomal protein L36, pseudogene 8
Gm12994 4 116852664 to 116853110 446 + pseudogene predicted gene 12994
Gm12993 4 116874588 to 116875465 877 - pseudogene predicted gene 12993
Cpgi14644 4 116876678 to 116878198 1520 CpG island CpG island 14644
Tssr38585 4 116877237 to 116877260 23 + TSS region transcription start site region 38585
Zswim5 4 116877402 to 116989105 111703 + protein coding gene zinc finger SWIM-type containing 5
Tssr38586 4 116877427 to 116877453 26 + TSS region transcription start site region 38586
Gm26355 4 116904637 to 116904741 104 + snRNA gene predicted gene, 26355
Gm25435 4 116915227 to 116915493 266 + unclassified non-coding RNA gene predicted gene, 25435
Gm22092 4 116922384 to 116922490 106 - snRNA gene predicted gene, 22092
Gm12998 4 116945786 to 116946515 729 - pseudogene predicted gene 12998
Urod 4 116989965 to 116994413 4448 - protein coding gene uroporphyrinogen decarboxylase
Tssr42934 4 116990153 to 116990197 44 - TSS region transcription start site region 42934
Tssr42935 4 116990359 to 116990381 22 - TSS region transcription start site region 42935
Tssr42936 4 116992561 to 116992564 3 - TSS region transcription start site region 42936
Tssr42937 4 116993624 to 116993634 10 - TSS region transcription start site region 42937
Tssr42938 4 116993687 to 116993703 16 - TSS region transcription start site region 42938
Tssr42939 4 116993739 to 116993754 15 - TSS region transcription start site region 42939
Cpgi14645 4 116994105 to 116994413 308 CpG island CpG island 14645
Tssr42940 4 116994354 to 116994372 18 - TSS region transcription start site region 42940
Tssr42941 4 116994374 to 116994385 11 - TSS region transcription start site region 42941
Cpgi14646 4 116995305 to 116996257 952 CpG island CpG island 14646
Tssr38587 4 116995306 to 116995342 36 + TSS region transcription start site region 38587
Hectd3 4 116995317 to 117005277 9960 + protein coding gene HECT domain E3 ubiquitin protein ligase 3
Tssr38588 4 116995348 to 116995370 22 + TSS region transcription start site region 38588
Tssr38589 4 116995375 to 116995384 9 + TSS region transcription start site region 38589
1700021J08Rik 4 117002166 to 117003012 846 - antisense lncRNA gene RIKEN cDNA 1700021J08 gene
Tssr42942 4 117003006 to 117003035 29 - TSS region transcription start site region 42942
Gm12997 4 117015211 to 117015753 542 - pseudogene predicted gene 12997
Cpgi14647 4 117019146 to 117019880 734 CpG island CpG island 14647
Eif2b3 4 117019399 to 117086852 67453 + protein coding gene eukaryotic translation initiation factor 2B, subunit 3
Tssr38590 4 117019400 to 117019437 37 + TSS region transcription start site region 38590
Tssr38591 4 117019440 to 117019452 12 + TSS region transcription start site region 38591
Gm22335 4 117027211 to 117027309 98 + snRNA gene predicted gene, 22335
Tssr38592 4 117068093 to 117068118 25 + TSS region transcription start site region 38592
Cpgi14648 4 117095741 to 117096430 689 CpG island CpG island 14648
Tssr38593 4 117096031 to 117096042 11 + TSS region transcription start site region 38593
Tssr38594 4 117096049 to 117096083 34 + TSS region transcription start site region 38594
Ptch2 4 117096075 to 117116101 20026 + protein coding gene patched 2
Tssr38595 4 117096796 to 117096807 11 + TSS region transcription start site region 38595
Tssr38596 4 117113023 to 117113026 3 + TSS region transcription start site region 38596
Btbd19 4 117119219 to 117125725 6506 - protein coding gene BTB (POZ) domain containing 19
Cpgi14649 4 117120291 to 117121426 1135 CpG island CpG island 14649
Tssr42943 4 117120297 to 117120306 9 - TSS region transcription start site region 42943
Tssr42944 4 117120331 to 117120342 11 - TSS region transcription start site region 42944
Tssr42945 4 117120454 to 117120469 15 - TSS region transcription start site region 42945
Tssr38597 4 117120592 to 117120606 14 + TSS region transcription start site region 38597
Tssr38598 4 117120720 to 117120739 19 + TSS region transcription start site region 38598
Tssr38599 4 117120740 to 117120751 11 + TSS region transcription start site region 38599
Tssr42946 4 117121241 to 117121248 7 - TSS region transcription start site region 42946
Tssr42947 4 117121255 to 117121285 30 - TSS region transcription start site region 42947
Tssr42948 4 117121286 to 117121318 32 - TSS region transcription start site region 42948
Tssr42949 4 117122315 to 117122353 38 - TSS region transcription start site region 42949
Tssr38600 4 117124527 to 117124551 24 + TSS region transcription start site region 38600
Tssr38601 4 117124660 to 117124677 17 + TSS region transcription start site region 38601
Tssr38602 4 117124933 to 117124981 48 + TSS region transcription start site region 38602
Tssr42950 4 117125636 to 117125683 47 - TSS region transcription start site region 42950
Tssr42951 4 117126054 to 117126074 20 - TSS region transcription start site region 42951
Tssr38603 4 117126767 to 117126774 7 + TSS region transcription start site region 38603
Tssr38604 4 117126776 to 117126797 21 + TSS region transcription start site region 38604
Tctex1d4 4 117126794 to 117128738 1944 + protein coding gene Tctex1 domain containing 4
Tssr38605 4 117126800 to 117126818 18 + TSS region transcription start site region 38605
Plk3 4 117128655 to 117133963 5308 - protein coding gene polo like kinase 3
Tssr42952 4 117131437 to 117131468 31 - TSS region transcription start site region 42952
Tssr42953 4 117131494 to 117131498 4 - TSS region transcription start site region 42953
Cpgi14650 4 117133179 to 117134218 1039 CpG island CpG island 14650
Tssr42954 4 117133953 to 117133969 16 - TSS region transcription start site region 42954
Tssr1274 4 117134134 to 117134158 24 + TSS region transcription start site region 1274
Best4-ps 4 117145257 to 117148285 3028 + pseudogene bestrophin 4, pseudogene
Cpgi14651 4 117146116 to 117146326 210 CpG island CpG island 14651
Tssr42955 4 117148223 to 117148231 8 - TSS region transcription start site region 42955
Cpgi14652 4 117148840 to 117149182 342 CpG island CpG island 14652
Tssr38606 4 117148912 to 117148914 2 + TSS region transcription start site region 38606
Gm13015 4 117148923 to 117149126 203 + pseudogene predicted gene 13015
Tssr38607 4 117153826 to 117153838 12 + TSS region transcription start site region 38607
Rps8 4 117153836 to 117156132 2296 - protein coding gene ribosomal protein S8
Gm22980 4 117154093 to 117154162 69 - snoRNA gene predicted gene, 22980
Snord38a 4 117154516 to 117154574 58 - snoRNA gene small nucleolar RNA, C/D box 38A
Gm26330 4 117155186 to 117155289 103 - snoRNA gene predicted gene, 26330
Cpgi14653 4 117155357 to 117156328 971 CpG island CpG island 14653
Snord55 4 117155771 to 117155848 77 - snoRNA gene small nucleolar RNA, C/D box 55
Tssr42956 4 117155844 to 117155848 4 - TSS region transcription start site region 42956
Tssr42957 4 117156075 to 117156085 10 - TSS region transcription start site region 42957
Tssr42958 4 117156122 to 117156143 21 - TSS region transcription start site region 42958
Tssr42959 4 117156144 to 117156174 30 - TSS region transcription start site region 42959
Tssr42960 4 117156185 to 117156197 12 - TSS region transcription start site region 42960
Tssr42961 4 117156199 to 117156227 28 - TSS region transcription start site region 42961
Gm22398 4 117158309 to 117158433 124 - miRNA gene predicted gene, 22398
Kif2c 4 117159633 to 117182624 22991 - protein coding gene kinesin family member 2C
Tssr42962 4 117178713 to 117178718 5 - TSS region transcription start site region 42962
Tssr42963 4 117178726 to 117178754 28 - TSS region transcription start site region 42963
Tssr42964 4 117178758 to 117178779 21 - TSS region transcription start site region 42964
Cpgi14654 4 117182160 to 117182927 767 CpG island CpG island 14654
Tssr42965 4 117182537 to 117182603 66 - TSS region transcription start site region 42965
Tssr42966 4 117182623 to 117182636 13 - TSS region transcription start site region 42966
Tssr42967 4 117182949 to 117182951 2 - TSS region transcription start site region 42967
Gm25099 4 117189942 to 117190057 115 + snRNA gene predicted gene, 25099
Tssr42968 4 117192101 to 117192120 19 - TSS region transcription start site region 42968
Gm23143 4 117202528 to 117202643 115 + snRNA gene predicted gene, 23143
Gt(pU21)107Imeg 4 117204988 to 117205363 375 unclassified gene gene trap 107, Institute of Molecular Embryology and Genetics
Tssr38608 4 117210825 to 117210832 7 + TSS region transcription start site region 38608
Gm23287 4 117210844 to 117210959 115 + snRNA gene predicted gene, 23287
Armh1 4 117213326 to 117251973 38647 - protein coding gene armadillo-like helical domain containing 1
1700012C08Rik 4 117213334 to 117213782 448 - unclassified non-coding RNA gene RIKEN cDNA 1700012C08 gene
D4Mit37 4 117214774 to 117215009 235 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 37
Fecq2 4 117214774 to 117215009 235 QTL fecundity QTL 2
Iva1 4 117214774 to 120866006 3651232 QTL isovaleric acid smelling 1
Skts7 4 117214774 to 117215009 235 QTL skin tumor susceptibility 7
Mvwf3 4 117215009 to 14010457 -103204552 QTL modifier of von Willebrand factor 3
Cpgi14655 4 117229701 to 117229870 169 CpG island CpG island 14655
Cpgi14656 4 117251568 to 117252221 653 CpG island CpG island 14656
Tssr42969 4 117251773 to 117251807 34 - TSS region transcription start site region 42969
Tssr42970 4 117251810 to 117251831 21 - TSS region transcription start site region 42970
Tssr42971 4 117251839 to 117251874 35 - TSS region transcription start site region 42971
Tssr42972 4 117251879 to 117251891 12 - TSS region transcription start site region 42972
Tmem53 4 117251951 to 117268582 16631 + protein coding gene transmembrane protein 53
Tssr38609 4 117251977 to 117252004 27 + TSS region transcription start site region 38609
Tssr38610 4 117252010 to 117252057 47 + TSS region transcription start site region 38610
Tssr42973 4 117252232 to 117252255 23 - TSS region transcription start site region 42973
Cpgi14657 4 117267956 to 117268282 326 CpG island CpG island 14657
Rnf220 4 117271463 to 117497052 225589 - protein coding gene ring finger protein 220
Tssr1275 4 117272150 to 117272162 12 + TSS region transcription start site region 1275
Tssr42974 4 117277640 to 117277652 12 - TSS region transcription start site region 42974
Tssr42975 4 117277656 to 117277669 13 - TSS region transcription start site region 42975
Tssr42976 4 117277676 to 117277683 7 - TSS region transcription start site region 42976
Tssr42977 4 117277712 to 117277723 11 - TSS region transcription start site region 42977
Tssr42978 4 117288525 to 117288572 47 - TSS region transcription start site region 42978
Cpgi14658 4 117288677 to 117289840 1163 CpG island CpG island 14658
Tssr42979 4 117289435 to 117289455 20 - TSS region transcription start site region 42979
Gm12843 4 117295817 to 117297725 1908 + antisense lncRNA gene predicted gene 12843
Cpgi14659 4 117303598 to 117304790 1192 CpG island CpG island 14659
Gm40231 4 117311744 to 117319430 7686 - lncRNA gene predicted gene, 40231
Cpgi14660 4 117312325 to 117312831 506 CpG island CpG island 14660
Cpgi14661 4 117317960 to 117318204 244 CpG island CpG island 14661
Cfq1 4 117320449 to 120250558 2930109 QTL conditioned fear QTL 1
C030012D19Rik 4 117328087 to 117329018 931 unclassified gene RIKEN cDNA C030012D19 gene
Tssr38611 4 117367720 to 117367730 10 + TSS region transcription start site region 38611
Tssr42980 4 117375453 to 117375467 14 - TSS region transcription start site region 42980
Tssr42981 4 117375471 to 117375485 14 - TSS region transcription start site region 42981
Tssr42982 4 117375495 to 117375501 6 - TSS region transcription start site region 42982
Gm12828 4 117441726 to 117446497 4771 + antisense lncRNA gene predicted gene 12828
Tssr38612 4 117445798 to 117445814 16 + TSS region transcription start site region 38612
Tssr38613 4 117445823 to 117445835 12 + TSS region transcription start site region 38613
Tssr1276 4 117445851 to 117445859 8 + TSS region transcription start site region 1276
Tssr38614 4 117445983 to 117445987 4 + TSS region transcription start site region 38614
D4Mit122 4 117449635 to 117449736 101 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 122
Tssr42983 4 117474019 to 117474031 12 - TSS region transcription start site region 42983
D4Jpk1 4 117483155 to 117483274 119 DNA segment DNA segment, Chr 4, Japan, Kominami 1
Cpgi14662 4 117484089 to 117485400 1311 CpG island CpG island 14662
Tssr42984 4 117489939 to 117489958 19 - TSS region transcription start site region 42984
Cpgi14663 4 117493876 to 117497082 3206 CpG island CpG island 14663
Tssr42985 4 117494977 to 117494996 19 - TSS region transcription start site region 42985
Tssr42986 4 117495661 to 117495665 4 - TSS region transcription start site region 42986
Tssr38615 4 117496420 to 117496463 43 + TSS region transcription start site region 38615
Gm12827 4 117496452 to 117500602 4150 + lincRNA gene predicted gene 12827
Tssr42987 4 117496909 to 117496918 9 - TSS region transcription start site region 42987
Tssr42988 4 117496940 to 117496957 17 - TSS region transcription start site region 42988
Tssr42989 4 117497075 to 117497076 1 - TSS region transcription start site region 42989
Cpgi14664 4 117508788 to 117509042 254 CpG island CpG island 14664
Gm34669 4 117509361 to 117519599 10238 + lncRNA gene predicted gene, 34669
Gm12826 4 117513823 to 117514201 378 - pseudogene predicted gene 12826
D4Jcs23 4 117539922 to 117540199 277 DNA segment DNA segment, Chr 4, John C. Schimenti 23
Cpgi14665 4 117550110 to 117550893 783 CpG island CpG island 14665
Tssr38616 4 117550305 to 117550316 11 + TSS region transcription start site region 38616
Tssr38617 4 117550326 to 117550409 83 + TSS region transcription start site region 38617
Eri3 4 117550365 to 117674297 123932 + protein coding gene exoribonuclease 3
Tssr38618 4 117550657 to 117550691 34 + TSS region transcription start site region 38618
Tssr38619 4 117552952 to 117552967 15 + TSS region transcription start site region 38619