Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:116288358-116639871

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm49337 4 116173384 to 116299841 126457 + protein coding gene predicted gene, 49337
Pik3r3 4 116221618 to 116303056 81438 + protein coding gene phosphoinositide-3-kinase regulatory subunit 3
D4Mit333 4 116289409 to 116289524 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 333
Tssr38515 4 116303851 to 116303854 3 + TSS region transcription start site region 38515
Mast2 4 116306762 to 116464183 157421 - protein coding gene microtubule associated serine/threonine kinase 2
Tssr42872 4 116329865 to 116329869 4 - TSS region transcription start site region 42872
Tssr42873 4 116371659 to 116371663 4 - TSS region transcription start site region 42873
Tssr42874 4 116371724 to 116371743 19 - TSS region transcription start site region 42874
Tssr42875 4 116371748 to 116371759 11 - TSS region transcription start site region 42875
Tssr42876 4 116371769 to 116371783 14 - TSS region transcription start site region 42876
Tssr42877 4 116371801 to 116371818 17 - TSS region transcription start site region 42877
A630078A22Rik 4 116382321 to 116385745 3424 unclassified gene RIKEN cDNA A630078A22 gene
Tssr42878 4 116404519 to 116404524 5 - TSS region transcription start site region 42878
Tssr42879 4 116406108 to 116406120 12 - TSS region transcription start site region 42879
Tssr42880 4 116406134 to 116406238 104 - TSS region transcription start site region 42880
Tssr42881 4 116406845 to 116406861 16 - TSS region transcription start site region 42881
D4Mit200 4 116413782 to 116413923 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 200
Mmtg2 4 116413782 to 124161387 7747605 QTL modifier of mammary tumor growth 2
Abd1 4 116413923 to 89063832 -27350091 QTL autoimmune biliary disease 1
Tssr38516 4 116448678 to 116448685 7 + TSS region transcription start site region 38516
Gm12950 4 116448788 to 116449204 416 + pseudogene predicted gene 12950
Cpgi14632 4 116463358 to 116464871 1513 CpG island CpG island 14632
Tssr42882 4 116464151 to 116464274 123 - TSS region transcription start site region 42882
Cpgi14633 4 116507285 to 116507993 708 CpG island CpG island 14633
Tssr42883 4 116507466 to 116507492 26 - TSS region transcription start site region 42883
Ipp 4 116507549 to 116538243 30694 + protein coding gene IAP promoted placental gene
Tssr38517 4 116507584 to 116507623 39 + TSS region transcription start site region 38517
Tmem69 4 116551633 to 116555936 4303 - protein coding gene transmembrane protein 69
Gm12953 4 116551740 to 116552627 887 + antisense lncRNA gene predicted gene 12953
Tssr42884 4 116555896 to 116555957 61 - TSS region transcription start site region 42884
Cpgi14634 4 116556927 to 116558179 1252 CpG island CpG island 14634
Tssr42885 4 116557047 to 116557057 10 - TSS region transcription start site region 42885
Tssr38518 4 116557121 to 116557141 20 + TSS region transcription start site region 38518
Tssr38519 4 116557151 to 116557164 13 + TSS region transcription start site region 38519
Tssr42886 4 116557446 to 116557464 18 - TSS region transcription start site region 42886
Tssr38520 4 116557578 to 116557587 9 + TSS region transcription start site region 38520
Tssr38521 4 116557591 to 116557617 26 + TSS region transcription start site region 38521
Gpbp1l1 4 116557658 to 116593882 36224 + protein coding gene GC-rich promoter binding protein 1-like 1
Tssr38522 4 116557668 to 116557724 56 + TSS region transcription start site region 38522
Tssr38523 4 116557740 to 116557751 11 + TSS region transcription start site region 38523
Tssr38524 4 116557780 to 116557799 19 + TSS region transcription start site region 38524
Tssr38525 4 116558056 to 116558090 34 + TSS region transcription start site region 38525
Tssr38526 4 116560147 to 116560152 5 + TSS region transcription start site region 38526
C530005A16Rik 4 116589733 to 116597630 7897 - lncRNA gene RIKEN cDNA C530005A16 gene
Tssr38527 4 116593442 to 116593490 48 + TSS region transcription start site region 38527
Tssr38528 4 116596637 to 116596665 28 + TSS region transcription start site region 38528
Tssr38529 4 116596672 to 116596703 31 + TSS region transcription start site region 38529
Ccdc17 4 116596730 to 116600266 3536 + protein coding gene coiled-coil domain containing 17
Tssr38530 4 116596731 to 116596746 15 + TSS region transcription start site region 38530
Tssr38531 4 116596778 to 116596782 4 + TSS region transcription start site region 38531
Cpgi14635 4 116597210 to 116597990 780 CpG island CpG island 14635
Tssr42887 4 116597604 to 116597644 40 - TSS region transcription start site region 42887
Nasp 4 116601052 to 116627941 26889 - protein coding gene nuclear autoantigenic sperm protein (histone-binding)
Tssr42888 4 116610736 to 116610751 15 - TSS region transcription start site region 42888
Tssr38532 4 116610978 to 116611016 38 + TSS region transcription start site region 38532
Tssr42889 4 116611296 to 116611310 14 - TSS region transcription start site region 42889
Tssr38533 4 116611326 to 116611348 22 + TSS region transcription start site region 38533
Tssr42890 4 116611342 to 116611371 29 - TSS region transcription start site region 42890
Tssr38534 4 116612018 to 116612037 19 + TSS region transcription start site region 38534
Tssr42891 4 116612057 to 116612070 13 - TSS region transcription start site region 42891
Tssr42892 4 116615277 to 116615301 24 - TSS region transcription start site region 42892
Tssr42893 4 116618914 to 116618945 31 - TSS region transcription start site region 42893
Cpgi14636 4 116626712 to 116627514 802 CpG island CpG island 14636
A430091L06Rik 4 116626842 to 116628686 1844 unclassified gene RIKEN cDNA A430091L06 gene
Tssr42894 4 116627367 to 116627397 30 - TSS region transcription start site region 42894
Tssr42895 4 116627486 to 116627503 17 - TSS region transcription start site region 42895
Tssr42896 4 116627896 to 116627908 12 - TSS region transcription start site region 42896
Tssr42897 4 116627921 to 116627956 35 - TSS region transcription start site region 42897
Tssr42898 4 116627972 to 116627988 16 - TSS region transcription start site region 42898
Tssr38535 4 116636508 to 116636517 9 + TSS region transcription start site region 38535
Akr1a1 4 116636510 to 116651674 15164 - protein coding gene aldo-keto reductase family 1, member A1 (aldehyde reductase)
Tssr42899 4 116637517 to 116637521 4 - TSS region transcription start site region 42899
Tssr38536 4 116637746 to 116637757 11 + TSS region transcription start site region 38536
Tssr38537 4 116637800 to 116637822 22 + TSS region transcription start site region 38537
Tssr42900 4 116638463 to 116638477 14 - TSS region transcription start site region 42900
Tssr42901 4 116639071 to 116639107 36 - TSS region transcription start site region 42901
Tssr42902 4 116639150 to 116639163 13 - TSS region transcription start site region 42902