Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 4:116050498-116259844

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70 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nsun4 4 116033002 to 116053879 20877 - protein coding gene NOL1/NOP2/Sun domain family, member 4
Tssr42851 4 116052186 to 116052192 6 - TSS region transcription start site region 42851
Cpgi14626 4 116053197 to 116054023 826 CpG island CpG island 14626
Tssr42852 4 116053384 to 116053404 20 - TSS region transcription start site region 42852
Tssr42853 4 116053418 to 116053453 35 - TSS region transcription start site region 42853
Tssr42854 4 116053456 to 116053500 44 - TSS region transcription start site region 42854
Tssr38490 4 116053567 to 116053592 25 + TSS region transcription start site region 38490
Tssr42855 4 116053776 to 116053822 46 - TSS region transcription start site region 42855
Tssr42856 4 116053825 to 116053849 24 - TSS region transcription start site region 42856
Tssr1271 4 116053856 to 116053868 12 - TSS region transcription start site region 1271
Tssr42857 4 116056334 to 116056351 17 - TSS region transcription start site region 42857
Uqcrh 4 116066965 to 116075070 8105 - protein coding gene ubiquinol-cytochrome c reductase hinge protein
Tssr38491 4 116067193 to 116067208 15 + TSS region transcription start site region 38491
Tssr38492 4 116067223 to 116067232 9 + TSS region transcription start site region 38492
Gm12854 4 116067268 to 116067564 296 + pseudogene predicted gene 12854
Cpgi14627 4 116074897 to 116076872 1975 CpG island CpG island 14627
Tssr42858 4 116075000 to 116075017 17 - TSS region transcription start site region 42858
Tssr42859 4 116075022 to 116075049 27 - TSS region transcription start site region 42859
Lrrc41 4 116075269 to 116097043 21774 + protein coding gene leucine rich repeat containing 41
Tssr38493 4 116075344 to 116075357 13 + TSS region transcription start site region 38493
Tssr38494 4 116075376 to 116075387 11 + TSS region transcription start site region 38494
Tssr38495 4 116075392 to 116075409 17 + TSS region transcription start site region 38495
Tssr38496 4 116075437 to 116075461 24 + TSS region transcription start site region 38496
Tssr38497 4 116075462 to 116075473 11 + TSS region transcription start site region 38497
Tssr38498 4 116075523 to 116075534 11 + TSS region transcription start site region 38498
Tssr38499 4 116075537 to 116075551 14 + TSS region transcription start site region 38499
Tssr38500 4 116075566 to 116075567 1 + TSS region transcription start site region 38500
Gm52704 4 116081762 to 116088448 6686 - lncRNA gene predicted gene, 52704
Rad54l 4 116094264 to 116123690 29426 - protein coding gene RAD54 like (S. cerevisiae)
Tssr38501 4 116095594 to 116095622 28 + TSS region transcription start site region 38501
Tssr42860 4 116122792 to 116122796 4 - TSS region transcription start site region 42860
Tssr42861 4 116123618 to 116123695 77 - TSS region transcription start site region 42861
Cpgi14628 4 116123620 to 116123839 219 CpG island CpG island 14628
Tssr38502 4 116123792 to 116123871 79 + TSS region transcription start site region 38502
2510003B16Rik 4 116123840 to 116138841 15001 + lncRNA gene RIKEN cDNA 2510003B16 gene
Lurap1 4 116136728 to 116144616 7888 - protein coding gene leucine rich adaptor protein 1
Cpgi14629 4 116144189 to 116144799 610 CpG island CpG island 14629
Tssr42862 4 116144512 to 116144528 16 - TSS region transcription start site region 42862
Tssr42863 4 116144542 to 116144598 56 - TSS region transcription start site region 42863
Tssr42864 4 116144610 to 116144626 16 - TSS region transcription start site region 42864
Cpgi14630 4 116150042 to 116150960 918 CpG island CpG island 14630
Tssr38503 4 116150491 to 116150576 85 + TSS region transcription start site region 38503
Pomgnt1 4 116150498 to 116159844 9346 + protein coding gene protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase
Tssr42865 4 116151359 to 116151366 7 - TSS region transcription start site region 42865
Tssr42866 4 116151378 to 116151400 22 - TSS region transcription start site region 42866
Tssr38504 4 116151415 to 116151424 9 + TSS region transcription start site region 38504
Tssr38505 4 116151426 to 116151448 22 + TSS region transcription start site region 38505
Tssr38506 4 116151449 to 116151477 28 + TSS region transcription start site region 38506
Tspan1 4 116161869 to 116167601 5732 - protein coding gene tetraspanin 1
Tssr42867 4 116163701 to 116163722 21 - TSS region transcription start site region 42867
Tssr42868 4 116163755 to 116163771 16 - TSS region transcription start site region 42868
Tssr42869 4 116164407 to 116164415 8 - TSS region transcription start site region 42869
Tssr42870 4 116167563 to 116167579 16 - TSS region transcription start site region 42870
Tssr42871 4 116167591 to 116167607 16 - TSS region transcription start site region 42871
Tssr38507 4 116173364 to 116173380 16 + TSS region transcription start site region 38507
P3r3urf 4 116173372 to 116174290 918 + protein coding gene Pik3r3 upstream reading frame
Gm49337 4 116173384 to 116299841 126457 + protein coding gene predicted gene, 49337
Tssr38508 4 116173389 to 116173400 11 + TSS region transcription start site region 38508
Tssr38509 4 116173411 to 116173422 11 + TSS region transcription start site region 38509
Gm12951 4 116176246 to 116177732 1486 + lncRNA gene predicted gene 12951
D4Dcr16 4 116177874 to 116177969 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 16
Llph-ps1 4 116200563 to 116200952 389 - pseudogene LLP homolog, pseudogene 1
Cpgi14631 4 116220697 to 116221895 1198 CpG island CpG island 14631
Tssr38510 4 116221590 to 116221615 25 + TSS region transcription start site region 38510
Pik3r3 4 116221618 to 116303056 81438 + protein coding gene phosphoinositide-3-kinase regulatory subunit 3
Tssr38511 4 116221621 to 116221632 11 + TSS region transcription start site region 38511
Tssr38512 4 116221633 to 116221650 17 + TSS region transcription start site region 38512
Tssr38513 4 116221677 to 116221688 11 + TSS region transcription start site region 38513
Tssr38514 4 116221689 to 116221698 9 + TSS region transcription start site region 38514
Gm18535 4 116250023 to 116251106 1083 - pseudogene predicted gene, 18535