Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:115806677-116636688

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atpaf1 4 115784814 to 115812314 27500 + protein coding gene ATP synthase mitochondrial F1 complex assembly factor 1
Gm12847 4 115818857 to 115822655 3798 + lincRNA gene predicted gene 12847
Cpgi14614 4 115827862 to 115828713 851 CpG island CpG island 14614
Tssr38477 4 115828061 to 115828103 42 + TSS region transcription start site region 38477
Mob3c 4 115828092 to 115836185 8093 + protein coding gene MOB kinase activator 3C
Tssr38478 4 115828115 to 115828130 15 + TSS region transcription start site region 38478
Tssr38479 4 115834967 to 115834977 10 + TSS region transcription start site region 38479
Cpgi14615 4 115839009 to 115839578 569 CpG island CpG island 14615
Tssr38480 4 115839192 to 115839238 46 + TSS region transcription start site region 38480
Mknk1 4 115839198 to 115879250 40052 + protein coding gene MAP kinase-interacting serine/threonine kinase 1
Tssr42839 4 115847455 to 115847457 2 - TSS region transcription start site region 42839
Tssr38481 4 115847768 to 115847797 29 + TSS region transcription start site region 38481
Tssr1269 4 115847843 to 115847856 13 + TSS region transcription start site region 1269
Tssr38482 4 115847907 to 115847916 9 + TSS region transcription start site region 38482
Tssr38483 4 115878296 to 115878331 35 + TSS region transcription start site region 38483
Gm29434 4 115878317 to 115878576 259 - antisense lncRNA gene predicted gene 29434
Tssr38484 4 115878922 to 115878940 18 + TSS region transcription start site region 38484
Tssr38485 4 115884334 to 115884340 6 + TSS region transcription start site region 38485
Tssr1270 4 115884348 to 115884356 8 + TSS region transcription start site region 1270
Tssr38486 4 115884367 to 115884374 7 + TSS region transcription start site region 38486
Tssr38487 4 115884384 to 115884392 8 + TSS region transcription start site region 38487
Kncn 4 115884400 to 115887882 3482 + protein coding gene kinocilin
Cpgi14616 4 115890394 to 115890963 569 CpG island CpG island 14616
6430628N08Rik 4 115897582 to 115899228 1646 + protein coding gene RIKEN cDNA 6430628N08 gene
Cpgi14617 4 115897872 to 115898626 754 CpG island CpG island 14617
Dmbx1 4 115915119 to 115939926 24807 - protein coding gene diencephalon/mesencephalon homeobox 1
Cpgi14618 4 115918042 to 115918350 308 CpG island CpG island 14618
Cpgi14619 4 115935960 to 115937124 1164 CpG island CpG island 14619
Cpgi14620 4 115938828 to 115940554 1726 CpG island CpG island 14620
Tssr42840 4 115939923 to 115939928 5 - TSS region transcription start site region 42840
Cpgi14621 4 115943855 to 115944525 670 CpG island CpG island 14621
Cpgi14622 4 115962505 to 115963578 1073 CpG island CpG island 14622
Tssr42841 4 115964219 to 115964224 5 - TSS region transcription start site region 42841
Gm38492 4 115967139 to 115970925 3786 - lncRNA gene predicted gene, 38492
Cpgi14623 4 115972474 to 115972717 243 CpG island CpG island 14623
Cpgi14624 4 115979174 to 115980035 861 CpG island CpG island 14624
Faah 4 115996656 to 116018695 22039 - protein coding gene fatty acid amide hydrolase
Tssr38488 4 116015779 to 116015812 33 + TSS region transcription start site region 38488
Cpgi14625 4 116017188 to 116018203 1015 CpG island CpG island 14625
Tssr38489 4 116017265 to 116017283 18 + TSS region transcription start site region 38489
Tssr42842 4 116017656 to 116017764 108 - TSS region transcription start site region 42842
Tssr42843 4 116017854 to 116017863 9 - TSS region transcription start site region 42843
Tssr42844 4 116018023 to 116018034 11 - TSS region transcription start site region 42844
Tssr42845 4 116018042 to 116018063 21 - TSS region transcription start site region 42845
Tssr42846 4 116018087 to 116018100 13 - TSS region transcription start site region 42846
Tssr42847 4 116018120 to 116018131 11 - TSS region transcription start site region 42847
Tssr42848 4 116018136 to 116018147 11 - TSS region transcription start site region 42848
Tssr42849 4 116018153 to 116018176 23 - TSS region transcription start site region 42849
Nsun4 4 116032842 to 116053876 21034 - protein coding gene NOL1/NOP2/Sun domain family, member 4
Tssr42850 4 116048655 to 116048685 30 - TSS region transcription start site region 42850
Tssr42851 4 116052186 to 116052192 6 - TSS region transcription start site region 42851
Cpgi14626 4 116053197 to 116054023 826 CpG island CpG island 14626
Tssr42852 4 116053384 to 116053404 20 - TSS region transcription start site region 42852
Tssr42853 4 116053418 to 116053453 35 - TSS region transcription start site region 42853
Tssr42854 4 116053456 to 116053500 44 - TSS region transcription start site region 42854
Tssr38490 4 116053567 to 116053592 25 + TSS region transcription start site region 38490
Tssr42855 4 116053776 to 116053822 46 - TSS region transcription start site region 42855
Tssr42856 4 116053825 to 116053849 24 - TSS region transcription start site region 42856
Tssr1271 4 116053856 to 116053868 12 - TSS region transcription start site region 1271
Tssr42857 4 116056334 to 116056351 17 - TSS region transcription start site region 42857
Uqcrh 4 116066965 to 116075070 8105 - protein coding gene ubiquinol-cytochrome c reductase hinge protein
Tssr38491 4 116067193 to 116067208 15 + TSS region transcription start site region 38491
Tssr38492 4 116067223 to 116067232 9 + TSS region transcription start site region 38492
Gm12854 4 116067268 to 116067564 296 + pseudogene predicted gene 12854
Cpgi14627 4 116074897 to 116076872 1975 CpG island CpG island 14627
Tssr42858 4 116075000 to 116075017 17 - TSS region transcription start site region 42858
Tssr42859 4 116075022 to 116075049 27 - TSS region transcription start site region 42859
Lrrc41 4 116075269 to 116097043 21774 + protein coding gene leucine rich repeat containing 41
Tssr38493 4 116075344 to 116075357 13 + TSS region transcription start site region 38493
Tssr38494 4 116075376 to 116075387 11 + TSS region transcription start site region 38494
Tssr38495 4 116075392 to 116075409 17 + TSS region transcription start site region 38495
Tssr38496 4 116075437 to 116075461 24 + TSS region transcription start site region 38496
Tssr38497 4 116075462 to 116075473 11 + TSS region transcription start site region 38497
Tssr38498 4 116075523 to 116075534 11 + TSS region transcription start site region 38498
Tssr38499 4 116075537 to 116075551 14 + TSS region transcription start site region 38499
Tssr38500 4 116075566 to 116075567 1 + TSS region transcription start site region 38500
Rad54l 4 116094264 to 116123690 29426 - protein coding gene RAD54 like (S. cerevisiae)
Tssr38501 4 116095594 to 116095622 28 + TSS region transcription start site region 38501
Tssr42860 4 116122792 to 116122796 4 - TSS region transcription start site region 42860
Tssr42861 4 116123618 to 116123695 77 - TSS region transcription start site region 42861
Cpgi14628 4 116123620 to 116123839 219 CpG island CpG island 14628
Tssr38502 4 116123792 to 116123871 79 + TSS region transcription start site region 38502
2510003B16Rik 4 116123840 to 116138841 15001 + lncRNA gene RIKEN cDNA 2510003B16 gene
Lurap1 4 116136728 to 116144616 7888 - protein coding gene leucine rich adaptor protein 1
Cpgi14629 4 116144189 to 116144799 610 CpG island CpG island 14629
Tssr42862 4 116144512 to 116144528 16 - TSS region transcription start site region 42862
Tssr42863 4 116144542 to 116144598 56 - TSS region transcription start site region 42863
Tssr42864 4 116144610 to 116144626 16 - TSS region transcription start site region 42864
Cpgi14630 4 116150042 to 116150960 918 CpG island CpG island 14630
Tssr38503 4 116150491 to 116150576 85 + TSS region transcription start site region 38503
Pomgnt1 4 116150498 to 116159844 9346 + protein coding gene protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase
Tssr42865 4 116151359 to 116151366 7 - TSS region transcription start site region 42865
Tssr42866 4 116151378 to 116151400 22 - TSS region transcription start site region 42866
Tssr38504 4 116151415 to 116151424 9 + TSS region transcription start site region 38504
Tssr38505 4 116151426 to 116151448 22 + TSS region transcription start site region 38505
Tssr38506 4 116151449 to 116151477 28 + TSS region transcription start site region 38506
Tspan1 4 116161869 to 116167601 5732 - protein coding gene tetraspanin 1
Tssr42867 4 116163701 to 116163722 21 - TSS region transcription start site region 42867
Tssr42868 4 116163755 to 116163771 16 - TSS region transcription start site region 42868
Tssr42869 4 116164407 to 116164415 8 - TSS region transcription start site region 42869
Tssr42870 4 116167563 to 116167579 16 - TSS region transcription start site region 42870
Tssr42871 4 116167591 to 116167607 16 - TSS region transcription start site region 42871
Tssr38507 4 116173364 to 116173380 16 + TSS region transcription start site region 38507
1700042G07Rik 4 116173372 to 116174290 918 + protein coding gene RIKEN cDNA 1700042G07 gene
Gm49337 4 116173384 to 116299841 126457 + protein coding gene predicted gene, 49337
Tssr38508 4 116173389 to 116173400 11 + TSS region transcription start site region 38508
Tssr38509 4 116173411 to 116173422 11 + TSS region transcription start site region 38509
Gm12951 4 116176246 to 116177732 1486 + lincRNA gene predicted gene 12951
D4Dcr16 4 116177874 to 116177969 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 16
Llph-ps1 4 116200563 to 116200952 389 - pseudogene LLP homolog, pseudogene 1
Cpgi14631 4 116220697 to 116221895 1198 CpG island CpG island 14631
Tssr38510 4 116221590 to 116221615 25 + TSS region transcription start site region 38510
Pik3r3 4 116221618 to 116303056 81438 + protein coding gene phosphoinositide-3-kinase regulatory subunit 3
Tssr38511 4 116221621 to 116221632 11 + TSS region transcription start site region 38511
Tssr38512 4 116221633 to 116221650 17 + TSS region transcription start site region 38512
Tssr38513 4 116221677 to 116221688 11 + TSS region transcription start site region 38513
Tssr38514 4 116221689 to 116221698 9 + TSS region transcription start site region 38514
Gm18535 4 116250023 to 116251106 1083 - pseudogene predicted gene, 18535
D4Mit333 4 116289409 to 116289524 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 333
Tssr38515 4 116303851 to 116303854 3 + TSS region transcription start site region 38515
Mast2 4 116306762 to 116464183 157421 - protein coding gene microtubule associated serine/threonine kinase 2
Tssr42872 4 116329865 to 116329869 4 - TSS region transcription start site region 42872
Tssr42873 4 116371659 to 116371663 4 - TSS region transcription start site region 42873
Tssr42874 4 116371724 to 116371743 19 - TSS region transcription start site region 42874
Tssr42875 4 116371748 to 116371759 11 - TSS region transcription start site region 42875
Tssr42876 4 116371769 to 116371783 14 - TSS region transcription start site region 42876
Tssr42877 4 116371801 to 116371818 17 - TSS region transcription start site region 42877
A630078A22Rik 4 116382321 to 116385745 3424 unclassified gene RIKEN cDNA A630078A22 gene
Tssr42878 4 116404519 to 116404524 5 - TSS region transcription start site region 42878
Tssr42879 4 116406108 to 116406120 12 - TSS region transcription start site region 42879
Tssr42880 4 116406134 to 116406238 104 - TSS region transcription start site region 42880
Tssr42881 4 116406845 to 116406861 16 - TSS region transcription start site region 42881
Mmtg2 4 116413782 to 124161387 7747605 QTL modifier of mammary tumor growth 2
D4Mit200 4 116413782 to 116413923 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 200
Abd1 4 116413923 to 89063832 -27350091 QTL autoimmune biliary disease 1
Tssr38516 4 116448678 to 116448685 7 + TSS region transcription start site region 38516
Gm12950 4 116448788 to 116449204 416 + pseudogene predicted gene 12950
Cpgi14632 4 116463358 to 116464871 1513 CpG island CpG island 14632
Tssr42882 4 116464151 to 116464274 123 - TSS region transcription start site region 42882
Cpgi14633 4 116507285 to 116507993 708 CpG island CpG island 14633
Tssr42883 4 116507466 to 116507492 26 - TSS region transcription start site region 42883
Ipp 4 116507549 to 116538243 30694 + protein coding gene IAP promoted placental gene
Tssr38517 4 116507584 to 116507623 39 + TSS region transcription start site region 38517
Tmem69 4 116551633 to 116555936 4303 - protein coding gene transmembrane protein 69
Gm12953 4 116551740 to 116552627 887 + antisense lncRNA gene predicted gene 12953
Tssr42884 4 116555896 to 116555957 61 - TSS region transcription start site region 42884
Cpgi14634 4 116556927 to 116558179 1252 CpG island CpG island 14634
Tssr42885 4 116557047 to 116557057 10 - TSS region transcription start site region 42885
Tssr38518 4 116557121 to 116557141 20 + TSS region transcription start site region 38518
Tssr38519 4 116557151 to 116557164 13 + TSS region transcription start site region 38519
Tssr42886 4 116557446 to 116557464 18 - TSS region transcription start site region 42886
Tssr38520 4 116557578 to 116557587 9 + TSS region transcription start site region 38520
Tssr38521 4 116557591 to 116557617 26 + TSS region transcription start site region 38521
Gpbp1l1 4 116557658 to 116593882 36224 + protein coding gene GC-rich promoter binding protein 1-like 1
Tssr38522 4 116557668 to 116557724 56 + TSS region transcription start site region 38522
Tssr38523 4 116557740 to 116557751 11 + TSS region transcription start site region 38523
Tssr38524 4 116557780 to 116557799 19 + TSS region transcription start site region 38524
Tssr38525 4 116558056 to 116558090 34 + TSS region transcription start site region 38525
Tssr38526 4 116560147 to 116560152 5 + TSS region transcription start site region 38526
C530005A16Rik 4 116589733 to 116597630 7897 - lncRNA gene RIKEN cDNA C530005A16 gene
Tssr38527 4 116593442 to 116593490 48 + TSS region transcription start site region 38527
Tssr38528 4 116596637 to 116596665 28 + TSS region transcription start site region 38528
Tssr38529 4 116596672 to 116596703 31 + TSS region transcription start site region 38529
Ccdc17 4 116596730 to 116600266 3536 + protein coding gene coiled-coil domain containing 17
Tssr38530 4 116596731 to 116596746 15 + TSS region transcription start site region 38530
Tssr38531 4 116596778 to 116596782 4 + TSS region transcription start site region 38531
Cpgi14635 4 116597210 to 116597990 780 CpG island CpG island 14635
Tssr42887 4 116597604 to 116597644 40 - TSS region transcription start site region 42887
Nasp 4 116601052 to 116627941 26889 - protein coding gene nuclear autoantigenic sperm protein (histone-binding)
Tssr42888 4 116610736 to 116610751 15 - TSS region transcription start site region 42888
Tssr38532 4 116610978 to 116611016 38 + TSS region transcription start site region 38532
Tssr42889 4 116611296 to 116611310 14 - TSS region transcription start site region 42889
Tssr38533 4 116611326 to 116611348 22 + TSS region transcription start site region 38533
Tssr42890 4 116611342 to 116611371 29 - TSS region transcription start site region 42890
Tssr38534 4 116612018 to 116612037 19 + TSS region transcription start site region 38534
Tssr42891 4 116612057 to 116612070 13 - TSS region transcription start site region 42891
Tssr42892 4 116615277 to 116615301 24 - TSS region transcription start site region 42892
Tssr42893 4 116618914 to 116618945 31 - TSS region transcription start site region 42893
Cpgi14636 4 116626712 to 116627514 802 CpG island CpG island 14636
A430091L06Rik 4 116626842 to 116628686 1844 unclassified gene RIKEN cDNA A430091L06 gene
Tssr42894 4 116627367 to 116627397 30 - TSS region transcription start site region 42894
Tssr42895 4 116627486 to 116627503 17 - TSS region transcription start site region 42895
Tssr42896 4 116627896 to 116627908 12 - TSS region transcription start site region 42896
Tssr42897 4 116627921 to 116627956 35 - TSS region transcription start site region 42897
Tssr42898 4 116627972 to 116627988 16 - TSS region transcription start site region 42898
Tssr38535 4 116636508 to 116636517 9 + TSS region transcription start site region 38535
Akr1a1 4 116636510 to 116651674 15164 - protein coding gene aldo-keto reductase family 1, member A1 (aldehyde reductase)