Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:115793828-116085554

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atpaf1 4 115784814 to 115812314 27500 + protein coding gene ATP synthase mitochondrial F1 complex assembly factor 1
Tssr38476 4 115800230 to 115800254 24 + TSS region transcription start site region 38476
Gm12847 4 115818857 to 115822655 3798 + lincRNA gene predicted gene 12847
Cpgi14614 4 115827862 to 115828713 851 CpG island CpG island 14614
Tssr38477 4 115828061 to 115828103 42 + TSS region transcription start site region 38477
Mob3c 4 115828092 to 115836185 8093 + protein coding gene MOB kinase activator 3C
Tssr38478 4 115828115 to 115828130 15 + TSS region transcription start site region 38478
Tssr38479 4 115834967 to 115834977 10 + TSS region transcription start site region 38479
Cpgi14615 4 115839009 to 115839578 569 CpG island CpG island 14615
Tssr38480 4 115839192 to 115839238 46 + TSS region transcription start site region 38480
Mknk1 4 115839198 to 115879250 40052 + protein coding gene MAP kinase-interacting serine/threonine kinase 1
Tssr42839 4 115847455 to 115847457 2 - TSS region transcription start site region 42839
Tssr38481 4 115847768 to 115847797 29 + TSS region transcription start site region 38481
Tssr1269 4 115847843 to 115847856 13 + TSS region transcription start site region 1269
Tssr38482 4 115847907 to 115847916 9 + TSS region transcription start site region 38482
Tssr38483 4 115878296 to 115878331 35 + TSS region transcription start site region 38483
Gm29434 4 115878317 to 115878576 259 - antisense lncRNA gene predicted gene 29434
Tssr38484 4 115878922 to 115878940 18 + TSS region transcription start site region 38484
Tssr38485 4 115884334 to 115884340 6 + TSS region transcription start site region 38485
Tssr1270 4 115884348 to 115884356 8 + TSS region transcription start site region 1270
Tssr38486 4 115884367 to 115884374 7 + TSS region transcription start site region 38486
Tssr38487 4 115884384 to 115884392 8 + TSS region transcription start site region 38487
Kncn 4 115884400 to 115887882 3482 + protein coding gene kinocilin
Cpgi14616 4 115890394 to 115890963 569 CpG island CpG island 14616
6430628N08Rik 4 115897582 to 115899228 1646 + protein coding gene RIKEN cDNA 6430628N08 gene
Cpgi14617 4 115897872 to 115898626 754 CpG island CpG island 14617
Dmbx1 4 115915119 to 115939926 24807 - protein coding gene diencephalon/mesencephalon homeobox 1
Cpgi14618 4 115918042 to 115918350 308 CpG island CpG island 14618
Cpgi14619 4 115935960 to 115937124 1164 CpG island CpG island 14619
Cpgi14620 4 115938828 to 115940554 1726 CpG island CpG island 14620
Tssr42840 4 115939923 to 115939928 5 - TSS region transcription start site region 42840
Cpgi14621 4 115943855 to 115944525 670 CpG island CpG island 14621
Cpgi14622 4 115962505 to 115963578 1073 CpG island CpG island 14622
Tssr42841 4 115964219 to 115964224 5 - TSS region transcription start site region 42841
Gm38492 4 115967139 to 115970925 3786 - lncRNA gene predicted gene, 38492
Cpgi14623 4 115972474 to 115972717 243 CpG island CpG island 14623
Cpgi14624 4 115979174 to 115980035 861 CpG island CpG island 14624
Faah 4 115996656 to 116018695 22039 - protein coding gene fatty acid amide hydrolase
Tssr38488 4 116015779 to 116015812 33 + TSS region transcription start site region 38488
Cpgi14625 4 116017188 to 116018203 1015 CpG island CpG island 14625
Tssr38489 4 116017265 to 116017283 18 + TSS region transcription start site region 38489
Tssr42842 4 116017656 to 116017764 108 - TSS region transcription start site region 42842
Tssr42843 4 116017854 to 116017863 9 - TSS region transcription start site region 42843
Tssr42844 4 116018023 to 116018034 11 - TSS region transcription start site region 42844
Tssr42845 4 116018042 to 116018063 21 - TSS region transcription start site region 42845
Tssr42846 4 116018087 to 116018100 13 - TSS region transcription start site region 42846
Tssr42847 4 116018120 to 116018131 11 - TSS region transcription start site region 42847
Tssr42848 4 116018136 to 116018147 11 - TSS region transcription start site region 42848
Tssr42849 4 116018153 to 116018176 23 - TSS region transcription start site region 42849
Nsun4 4 116032842 to 116053876 21034 - protein coding gene NOL1/NOP2/Sun domain family, member 4
Tssr42850 4 116048655 to 116048685 30 - TSS region transcription start site region 42850
Tssr42851 4 116052186 to 116052192 6 - TSS region transcription start site region 42851
Cpgi14626 4 116053197 to 116054023 826 CpG island CpG island 14626
Tssr42852 4 116053384 to 116053404 20 - TSS region transcription start site region 42852
Tssr42853 4 116053418 to 116053453 35 - TSS region transcription start site region 42853
Tssr42854 4 116053456 to 116053500 44 - TSS region transcription start site region 42854
Tssr38490 4 116053567 to 116053592 25 + TSS region transcription start site region 38490
Tssr42855 4 116053776 to 116053822 46 - TSS region transcription start site region 42855
Tssr42856 4 116053825 to 116053849 24 - TSS region transcription start site region 42856
Tssr1271 4 116053856 to 116053868 12 - TSS region transcription start site region 1271
Tssr42857 4 116056334 to 116056351 17 - TSS region transcription start site region 42857
Uqcrh 4 116066965 to 116075070 8105 - protein coding gene ubiquinol-cytochrome c reductase hinge protein
Tssr38491 4 116067193 to 116067208 15 + TSS region transcription start site region 38491
Tssr38492 4 116067223 to 116067232 9 + TSS region transcription start site region 38492
Gm12854 4 116067268 to 116067564 296 + pseudogene predicted gene 12854
Cpgi14627 4 116074897 to 116076872 1975 CpG island CpG island 14627
Tssr42858 4 116075000 to 116075017 17 - TSS region transcription start site region 42858
Tssr42859 4 116075022 to 116075049 27 - TSS region transcription start site region 42859
Lrrc41 4 116075269 to 116097043 21774 + protein coding gene leucine rich repeat containing 41
Tssr38493 4 116075344 to 116075357 13 + TSS region transcription start site region 38493
Tssr38494 4 116075376 to 116075387 11 + TSS region transcription start site region 38494
Tssr38495 4 116075392 to 116075409 17 + TSS region transcription start site region 38495
Tssr38496 4 116075437 to 116075461 24 + TSS region transcription start site region 38496
Tssr38497 4 116075462 to 116075473 11 + TSS region transcription start site region 38497
Tssr38498 4 116075523 to 116075534 11 + TSS region transcription start site region 38498
Tssr38499 4 116075537 to 116075551 14 + TSS region transcription start site region 38499
Tssr38500 4 116075566 to 116075567 1 + TSS region transcription start site region 38500