Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:115530596-116020609

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cyp4a10 4 115518287 to 115533649 15362 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 10
Tssr38461 4 115532606 to 115532638 32 + TSS region transcription start site region 38461
Cyp4b1-ps1 4 115543385 to 115545064 1679 - pseudogene cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 1
Tssr1268 4 115563620 to 115563631 11 + TSS region transcription start site region 1268
Cyp4a31 4 115563649 to 115579015 15366 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 31
Tssr38462 4 115563679 to 115563699 20 + TSS region transcription start site region 38462
D4Mit352a 4 115565401 to 115565506 105 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 352a
Cyp4b1-ps2 4 115582286 to 115583144 858 - pseudogene cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 2
Cyp4a32 4 115600969 to 115621602 20633 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 32
D4Mit352b 4 115602651 to 115602763 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 352b
Cyp4b1 4 115624728 to 115647705 22977 - protein coding gene cytochrome P450, family 4, subfamily b, polypeptide 1
Tssr42834 4 115647710 to 115647728 18 - TSS region transcription start site region 42834
Tssr38463 4 115652319 to 115652320 1 + TSS region transcription start site region 38463
Gm12848 4 115652642 to 115653477 835 + pseudogene predicted gene 12848
Cpgi14610 4 115657371 to 115657660 289 CpG island CpG island 14610
Gm12849 4 115707251 to 115708303 1052 + pseudogene predicted gene 12849
Cpgi14611 4 115737465 to 115738163 698 CpG island CpG island 14611
Tssr38464 4 115737738 to 115737752 14 + TSS region transcription start site region 38464
Tssr38465 4 115737754 to 115737810 56 + TSS region transcription start site region 38465
Efcab14 4 115737779 to 115777328 39549 + protein coding gene EF-hand calcium binding domain 14
Tssr38466 4 115737823 to 115737840 17 + TSS region transcription start site region 38466
Tssr38467 4 115738413 to 115738447 34 + TSS region transcription start site region 38467
Cpgi14612 4 115738678 to 115738834 156 CpG island CpG island 14612
Tssr38468 4 115775522 to 115775533 11 + TSS region transcription start site region 38468
Tssr38469 4 115775596 to 115775609 13 + TSS region transcription start site region 38469
Tssr38470 4 115775995 to 115776000 5 + TSS region transcription start site region 38470
Tex38 4 115779834 to 115781018 1184 - protein coding gene testis expressed 38
Tssr42835 4 115781012 to 115781023 11 - TSS region transcription start site region 42835
Tssr42836 4 115781045 to 115781064 19 - TSS region transcription start site region 42836
Tssr42837 4 115781090 to 115781104 14 - TSS region transcription start site region 42837
Tssr42838 4 115781115 to 115781121 6 - TSS region transcription start site region 42838
Tssr38471 4 115781191 to 115781203 12 + TSS region transcription start site region 38471
Cpgi14613 4 115784744 to 115785652 908 CpG island CpG island 14613
Tssr38472 4 115784799 to 115784837 38 + TSS region transcription start site region 38472
Atpaf1 4 115784814 to 115812314 27500 + protein coding gene ATP synthase mitochondrial F1 complex assembly factor 1
Tssr38473 4 115784901 to 115784912 11 + TSS region transcription start site region 38473
Tssr38474 4 115784949 to 115784991 42 + TSS region transcription start site region 38474
Tssr38475 4 115784996 to 115785052 56 + TSS region transcription start site region 38475
Tssr38476 4 115800230 to 115800254 24 + TSS region transcription start site region 38476
Gm12847 4 115818857 to 115822655 3798 + lincRNA gene predicted gene 12847
Cpgi14614 4 115827862 to 115828713 851 CpG island CpG island 14614
Tssr38477 4 115828061 to 115828103 42 + TSS region transcription start site region 38477
Mob3c 4 115828092 to 115836185 8093 + protein coding gene MOB kinase activator 3C
Tssr38478 4 115828115 to 115828130 15 + TSS region transcription start site region 38478
Tssr38479 4 115834967 to 115834977 10 + TSS region transcription start site region 38479
Cpgi14615 4 115839009 to 115839578 569 CpG island CpG island 14615
Tssr38480 4 115839192 to 115839238 46 + TSS region transcription start site region 38480
Mknk1 4 115839198 to 115879250 40052 + protein coding gene MAP kinase-interacting serine/threonine kinase 1
Tssr42839 4 115847455 to 115847457 2 - TSS region transcription start site region 42839
Tssr38481 4 115847768 to 115847797 29 + TSS region transcription start site region 38481
Tssr1269 4 115847843 to 115847856 13 + TSS region transcription start site region 1269
Tssr38482 4 115847907 to 115847916 9 + TSS region transcription start site region 38482
Tssr38483 4 115878296 to 115878331 35 + TSS region transcription start site region 38483
Gm29434 4 115878317 to 115878576 259 - antisense lncRNA gene predicted gene 29434
Tssr38484 4 115878922 to 115878940 18 + TSS region transcription start site region 38484
Tssr38485 4 115884334 to 115884340 6 + TSS region transcription start site region 38485
Tssr1270 4 115884348 to 115884356 8 + TSS region transcription start site region 1270
Tssr38486 4 115884367 to 115884374 7 + TSS region transcription start site region 38486
Tssr38487 4 115884384 to 115884392 8 + TSS region transcription start site region 38487
Kncn 4 115884400 to 115887882 3482 + protein coding gene kinocilin
Cpgi14616 4 115890394 to 115890963 569 CpG island CpG island 14616
6430628N08Rik 4 115897582 to 115899228 1646 + protein coding gene RIKEN cDNA 6430628N08 gene
Cpgi14617 4 115897872 to 115898626 754 CpG island CpG island 14617
Dmbx1 4 115915119 to 115939926 24807 - protein coding gene diencephalon/mesencephalon homeobox 1
Cpgi14618 4 115918042 to 115918350 308 CpG island CpG island 14618
Cpgi14619 4 115935960 to 115937124 1164 CpG island CpG island 14619
Cpgi14620 4 115938828 to 115940554 1726 CpG island CpG island 14620
Tssr42840 4 115939923 to 115939928 5 - TSS region transcription start site region 42840
Cpgi14621 4 115943855 to 115944525 670 CpG island CpG island 14621
Cpgi14622 4 115962505 to 115963578 1073 CpG island CpG island 14622
Tssr42841 4 115964219 to 115964224 5 - TSS region transcription start site region 42841
Gm38492 4 115967139 to 115970925 3786 - lncRNA gene predicted gene, 38492
Cpgi14623 4 115972474 to 115972717 243 CpG island CpG island 14623
Cpgi14624 4 115979174 to 115980035 861 CpG island CpG island 14624
Faah 4 115996656 to 116018695 22039 - protein coding gene fatty acid amide hydrolase
Tssr38488 4 116015779 to 116015812 33 + TSS region transcription start site region 38488
Cpgi14625 4 116017188 to 116018203 1015 CpG island CpG island 14625
Tssr38489 4 116017265 to 116017283 18 + TSS region transcription start site region 38489
Tssr42842 4 116017656 to 116017764 108 - TSS region transcription start site region 42842
Tssr42843 4 116017854 to 116017863 9 - TSS region transcription start site region 42843
Tssr42844 4 116018023 to 116018034 11 - TSS region transcription start site region 42844
Tssr42845 4 116018042 to 116018063 21 - TSS region transcription start site region 42845
Tssr42846 4 116018087 to 116018100 13 - TSS region transcription start site region 42846
Tssr42847 4 116018120 to 116018131 11 - TSS region transcription start site region 42847
Tssr42848 4 116018136 to 116018147 11 - TSS region transcription start site region 42848
Tssr42849 4 116018153 to 116018176 23 - TSS region transcription start site region 42849