Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:115318649-115824015

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cyp4a12a 4 115299046 to 115332815 33769 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 12a
Tssr38459 4 115332019 to 115332035 16 + TSS region transcription start site region 38459
Cyp4a30-ps 4 115343788 to 115363112 19324 + pseudogene cytochrome P450, family 4, subfamily a, member 30, pseudogene
Cyp4a12b 4 115411624 to 115439034 27410 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 12B
Gm12837 4 115416082 to 115416454 372 - pseudogene predicted gene 12837
Tssr38460 4 115452571 to 115452578 7 + TSS region transcription start site region 38460
Cyp4a30b 4 115452604 to 115471062 18458 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 30b
Cpgi14609 4 115453761 to 115453938 177 CpG island CpG island 14609
Gm12838 4 115453792 to 115454116 324 - pseudogene predicted gene 12838
Gm12833 4 115480800 to 115481276 476 + pseudogene predicted gene 12833
Cyp4a14 4 115486200 to 115496142 9942 - protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 14
Tssr42828 4 115486890 to 115486902 12 - TSS region transcription start site region 42828
Tssr42829 4 115487067 to 115487117 50 - TSS region transcription start site region 42829
Tssr42830 4 115487244 to 115487276 32 - TSS region transcription start site region 42830
Tssr42831 4 115491144 to 115491155 11 - TSS region transcription start site region 42831
Tssr42832 4 115492114 to 115492127 13 - TSS region transcription start site region 42832
Tssr42833 4 115496129 to 115496147 18 - TSS region transcription start site region 42833
Cyp4a10 4 115518287 to 115533649 15362 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 10
Tssr38461 4 115532606 to 115532638 32 + TSS region transcription start site region 38461
Cyp4b1-ps1 4 115543385 to 115545064 1679 - pseudogene cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 1
Tssr1268 4 115563620 to 115563631 11 + TSS region transcription start site region 1268
Cyp4a31 4 115563649 to 115579015 15366 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 31
Tssr38462 4 115563679 to 115563699 20 + TSS region transcription start site region 38462
D4Mit352a 4 115565401 to 115565506 105 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 352a
Cyp4b1-ps2 4 115582286 to 115583144 858 - pseudogene cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 2
Cyp4a32 4 115600969 to 115621602 20633 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 32
D4Mit352b 4 115602651 to 115602763 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 352b
Cyp4b1 4 115624728 to 115647705 22977 - protein coding gene cytochrome P450, family 4, subfamily b, polypeptide 1
Tssr42834 4 115647710 to 115647728 18 - TSS region transcription start site region 42834
Tssr38463 4 115652319 to 115652320 1 + TSS region transcription start site region 38463
Gm12848 4 115652642 to 115653477 835 + pseudogene predicted gene 12848
Cpgi14610 4 115657371 to 115657660 289 CpG island CpG island 14610
Gm12849 4 115707251 to 115708303 1052 + pseudogene predicted gene 12849
Cpgi14611 4 115737465 to 115738163 698 CpG island CpG island 14611
Tssr38464 4 115737738 to 115737752 14 + TSS region transcription start site region 38464
Tssr38465 4 115737754 to 115737810 56 + TSS region transcription start site region 38465
Efcab14 4 115737779 to 115777328 39549 + protein coding gene EF-hand calcium binding domain 14
Tssr38466 4 115737823 to 115737840 17 + TSS region transcription start site region 38466
Tssr38467 4 115738413 to 115738447 34 + TSS region transcription start site region 38467
Cpgi14612 4 115738678 to 115738834 156 CpG island CpG island 14612
Tssr38468 4 115775522 to 115775533 11 + TSS region transcription start site region 38468
Tssr38469 4 115775596 to 115775609 13 + TSS region transcription start site region 38469
Tssr38470 4 115775995 to 115776000 5 + TSS region transcription start site region 38470
Tex38 4 115779834 to 115781018 1184 - protein coding gene testis expressed 38
Tssr42835 4 115781012 to 115781023 11 - TSS region transcription start site region 42835
Tssr42836 4 115781045 to 115781064 19 - TSS region transcription start site region 42836
Tssr42837 4 115781090 to 115781104 14 - TSS region transcription start site region 42837
Tssr42838 4 115781115 to 115781121 6 - TSS region transcription start site region 42838
Tssr38471 4 115781191 to 115781203 12 + TSS region transcription start site region 38471
Cpgi14613 4 115784744 to 115785652 908 CpG island CpG island 14613
Tssr38472 4 115784799 to 115784837 38 + TSS region transcription start site region 38472
Atpaf1 4 115784814 to 115812314 27500 + protein coding gene ATP synthase mitochondrial F1 complex assembly factor 1
Tssr38473 4 115784901 to 115784912 11 + TSS region transcription start site region 38473
Tssr38474 4 115784949 to 115784991 42 + TSS region transcription start site region 38474
Tssr38475 4 115784996 to 115785052 56 + TSS region transcription start site region 38475
Tssr38476 4 115800230 to 115800254 24 + TSS region transcription start site region 38476
Gm12847 4 115818857 to 115822655 3798 + lincRNA gene predicted gene 12847