Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:115041200-115941142

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stil 4 115000159 to 115043196 43037 + protein coding gene Scl/Tal1 interrupting locus
Cpgi14604 4 115052531 to 115053044 513 CpG island CpG island 14604
Cpgi14605 4 115056293 to 115058111 1818 CpG island CpG island 14605
Tal1 4 115056426 to 115071755 15329 + protein coding gene T cell acute lymphocytic leukemia 1
Tssr38432 4 115056738 to 115056749 11 + TSS region transcription start site region 38432
Tssr38433 4 115056763 to 115056782 19 + TSS region transcription start site region 38433
Tssr38434 4 115057010 to 115057039 29 + TSS region transcription start site region 38434
Tssr38435 4 115057041 to 115057060 19 + TSS region transcription start site region 38435
Tssr38436 4 115057116 to 115057127 11 + TSS region transcription start site region 38436
Tssr38437 4 115057352 to 115057407 55 + TSS region transcription start site region 38437
Tssr38438 4 115057410 to 115057437 27 + TSS region transcription start site region 38438
Tssr42824 4 115057507 to 115057522 15 - TSS region transcription start site region 42824
Gm33786 4 115057622 to 115058223 601 - lncRNA gene predicted gene, 33786
Tssr38439 4 115057649 to 115057671 22 + TSS region transcription start site region 38439
Tssr38440 4 115057683 to 115057701 18 + TSS region transcription start site region 38440
Tssr38441 4 115059507 to 115059553 46 + TSS region transcription start site region 38441
Tssr38442 4 115059554 to 115059561 7 + TSS region transcription start site region 38442
Tssr38443 4 115062841 to 115062861 20 + TSS region transcription start site region 38443
Cpgi14606 4 115062855 to 115064190 1335 CpG island CpG island 14606
Tssr38444 4 115063371 to 115063385 14 + TSS region transcription start site region 38444
Tssr38445 4 115065107 to 115065110 3 + TSS region transcription start site region 38445
Tssr42825 4 115074909 to 115074920 11 - TSS region transcription start site region 42825
Pdzk1ip1 4 115088708 to 115093894 5186 + protein coding gene PDZK1 interacting protein 1
Tssr38446 4 115088734 to 115088769 35 + TSS region transcription start site region 38446
Tssr38447 4 115088779 to 115088790 11 + TSS region transcription start site region 38447
Tssr38448 4 115088863 to 115088872 9 + TSS region transcription start site region 38448
Tssr38449 4 115088905 to 115088909 4 + TSS region transcription start site region 38449
Tssr38450 4 115088914 to 115088925 11 + TSS region transcription start site region 38450
Tssr38451 4 115088990 to 115089149 159 + TSS region transcription start site region 38451
Tssr38452 4 115089155 to 115089159 4 + TSS region transcription start site region 38452
Tssr38453 4 115090160 to 115090165 5 + TSS region transcription start site region 38453
Tssr38454 4 115090168 to 115090169 1 + TSS region transcription start site region 38454
Tssr38455 4 115090188 to 115090228 40 + TSS region transcription start site region 38455
Tssr1267 4 115090996 to 115091006 10 + TSS region transcription start site region 1267
Tssr38456 4 115093582 to 115093608 26 + TSS region transcription start site region 38456
Cpgi14607 4 115095751 to 115096003 252 CpG island CpG island 14607
Tssr38457 4 115096136 to 115096172 36 + TSS region transcription start site region 38457
Cyp4x1 4 115108682 to 115133977 25295 - protein coding gene cytochrome P450, family 4, subfamily x, polypeptide 1
Cpgi14608 4 115133732 to 115134271 539 CpG island CpG island 14608
Cyp4x1os 4 115133832 to 115137864 4032 + antisense lncRNA gene cytochrome P450, family 4, subfamily x, polypeptide 1, opposite strand
Tssr42826 4 115134063 to 115134084 21 - TSS region transcription start site region 42826
Tssr42827 4 115134104 to 115134121 17 - TSS region transcription start site region 42827
Cyp4a28-ps 4 115138568 to 115156506 17938 - pseudogene cytochrome P450, family 4, subfamily a, polypeptide 28, pseudogene
D4Mit248 4 115173512 to 115173723 211 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 248
Nidds 4 115173580 to 129572122 14398542 QTL non-insulin-dependent diabetes mellitus in SJL
D4Mit278 4 115173580 to 115173722 142 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 278
Cyp4a29-ps1 4 115175798 to 115176843 1045 + pseudogene cytochrome P450, family 4, subfamily a, polypeptide 29, pseudogene 1
Gm12834 4 115238755 to 115241577 2822 - pseudogene predicted gene 12834
Tssr38458 4 115242040 to 115242048 8 + TSS region transcription start site region 38458
Cyp4a29 4 115242084 to 115254557 12473 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 29
Cyp4a12a 4 115299046 to 115332815 33769 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 12a
Tssr38459 4 115332019 to 115332035 16 + TSS region transcription start site region 38459
Cyp4a30-ps 4 115343788 to 115363112 19324 + pseudogene cytochrome P450, family 4, subfamily a, member 30, pseudogene
Cyp4a12b 4 115411624 to 115439034 27410 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 12B
Gm12837 4 115416082 to 115416454 372 - pseudogene predicted gene 12837
Tssr38460 4 115452571 to 115452578 7 + TSS region transcription start site region 38460
Cyp4a30b 4 115452604 to 115471062 18458 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 30b
Cpgi14609 4 115453761 to 115453938 177 CpG island CpG island 14609
Gm12838 4 115453792 to 115454116 324 - pseudogene predicted gene 12838
Gm12833 4 115480800 to 115481276 476 + pseudogene predicted gene 12833
Cyp4a14 4 115486200 to 115496142 9942 - protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 14
Tssr42828 4 115486890 to 115486902 12 - TSS region transcription start site region 42828
Tssr42829 4 115487067 to 115487117 50 - TSS region transcription start site region 42829
Tssr42830 4 115487244 to 115487276 32 - TSS region transcription start site region 42830
Tssr42831 4 115491144 to 115491155 11 - TSS region transcription start site region 42831
Tssr42832 4 115492114 to 115492127 13 - TSS region transcription start site region 42832
Tssr42833 4 115496129 to 115496147 18 - TSS region transcription start site region 42833
Cyp4a10 4 115518287 to 115533649 15362 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 10
Tssr38461 4 115532606 to 115532638 32 + TSS region transcription start site region 38461
Cyp4b1-ps1 4 115543385 to 115545064 1679 - pseudogene cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 1
Tssr1268 4 115563620 to 115563631 11 + TSS region transcription start site region 1268
Cyp4a31 4 115563649 to 115579015 15366 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 31
Tssr38462 4 115563679 to 115563699 20 + TSS region transcription start site region 38462
D4Mit352a 4 115565401 to 115565506 105 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 352a
Cyp4b1-ps2 4 115582286 to 115583144 858 - pseudogene cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 2
Cyp4a32 4 115600969 to 115621602 20633 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 32
D4Mit352b 4 115602651 to 115602763 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 352b
Cyp4b1 4 115624728 to 115647705 22977 - protein coding gene cytochrome P450, family 4, subfamily b, polypeptide 1
Tssr42834 4 115647710 to 115647728 18 - TSS region transcription start site region 42834
Tssr38463 4 115652319 to 115652320 1 + TSS region transcription start site region 38463
Gm12848 4 115652642 to 115653477 835 + pseudogene predicted gene 12848
Cpgi14610 4 115657371 to 115657660 289 CpG island CpG island 14610
Gm12849 4 115707251 to 115708303 1052 + pseudogene predicted gene 12849
Cpgi14611 4 115737465 to 115738163 698 CpG island CpG island 14611
Tssr38464 4 115737738 to 115737752 14 + TSS region transcription start site region 38464
Tssr38465 4 115737754 to 115737810 56 + TSS region transcription start site region 38465
Efcab14 4 115737779 to 115777328 39549 + protein coding gene EF-hand calcium binding domain 14
Tssr38466 4 115737823 to 115737840 17 + TSS region transcription start site region 38466
Tssr38467 4 115738413 to 115738447 34 + TSS region transcription start site region 38467
Cpgi14612 4 115738678 to 115738834 156 CpG island CpG island 14612
Tssr38468 4 115775522 to 115775533 11 + TSS region transcription start site region 38468
Tssr38469 4 115775596 to 115775609 13 + TSS region transcription start site region 38469
Tssr38470 4 115775995 to 115776000 5 + TSS region transcription start site region 38470
Tex38 4 115779834 to 115781018 1184 - protein coding gene testis expressed 38
Tssr42835 4 115781012 to 115781023 11 - TSS region transcription start site region 42835
Tssr42836 4 115781045 to 115781064 19 - TSS region transcription start site region 42836
Tssr42837 4 115781090 to 115781104 14 - TSS region transcription start site region 42837
Tssr42838 4 115781115 to 115781121 6 - TSS region transcription start site region 42838
Tssr38471 4 115781191 to 115781203 12 + TSS region transcription start site region 38471
Cpgi14613 4 115784744 to 115785652 908 CpG island CpG island 14613
Tssr38472 4 115784799 to 115784837 38 + TSS region transcription start site region 38472
Atpaf1 4 115784814 to 115812314 27500 + protein coding gene ATP synthase mitochondrial F1 complex assembly factor 1
Tssr38473 4 115784901 to 115784912 11 + TSS region transcription start site region 38473
Tssr38474 4 115784949 to 115784991 42 + TSS region transcription start site region 38474
Tssr38475 4 115784996 to 115785052 56 + TSS region transcription start site region 38475
Tssr38476 4 115800230 to 115800254 24 + TSS region transcription start site region 38476
Gm12847 4 115818857 to 115822655 3798 + lincRNA gene predicted gene 12847
Cpgi14614 4 115827862 to 115828713 851 CpG island CpG island 14614
Tssr38477 4 115828061 to 115828103 42 + TSS region transcription start site region 38477
Mob3c 4 115828092 to 115836185 8093 + protein coding gene MOB kinase activator 3C
Tssr38478 4 115828115 to 115828130 15 + TSS region transcription start site region 38478
Tssr38479 4 115834967 to 115834977 10 + TSS region transcription start site region 38479
Cpgi14615 4 115839009 to 115839578 569 CpG island CpG island 14615
Tssr38480 4 115839192 to 115839238 46 + TSS region transcription start site region 38480
Mknk1 4 115839198 to 115879250 40052 + protein coding gene MAP kinase-interacting serine/threonine kinase 1
Tssr42839 4 115847455 to 115847457 2 - TSS region transcription start site region 42839
Tssr38481 4 115847768 to 115847797 29 + TSS region transcription start site region 38481
Tssr1269 4 115847843 to 115847856 13 + TSS region transcription start site region 1269
Tssr38482 4 115847907 to 115847916 9 + TSS region transcription start site region 38482
Tssr38483 4 115878296 to 115878331 35 + TSS region transcription start site region 38483
Gm29434 4 115878317 to 115878576 259 - antisense lncRNA gene predicted gene 29434
Tssr38484 4 115878922 to 115878940 18 + TSS region transcription start site region 38484
Tssr38485 4 115884334 to 115884340 6 + TSS region transcription start site region 38485
Tssr1270 4 115884348 to 115884356 8 + TSS region transcription start site region 1270
Tssr38486 4 115884367 to 115884374 7 + TSS region transcription start site region 38486
Tssr38487 4 115884384 to 115884392 8 + TSS region transcription start site region 38487
Kncn 4 115884400 to 115887882 3482 + protein coding gene kinocilin
Cpgi14616 4 115890394 to 115890963 569 CpG island CpG island 14616
6430628N08Rik 4 115897582 to 115899228 1646 + protein coding gene RIKEN cDNA 6430628N08 gene
Cpgi14617 4 115897872 to 115898626 754 CpG island CpG island 14617
Dmbx1 4 115915119 to 115939926 24807 - protein coding gene diencephalon/mesencephalon homeobox 1
Cpgi14618 4 115918042 to 115918350 308 CpG island CpG island 14618
Cpgi14619 4 115935960 to 115937124 1164 CpG island CpG island 14619
Cpgi14620 4 115938828 to 115940554 1726 CpG island CpG island 14620
Tssr42840 4 115939923 to 115939928 5 - TSS region transcription start site region 42840