Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:114919104-115349121

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Foxd2os 4 114909289 to 114921118 11829 + lncRNA gene forkhead box D2, opposite strand
Cpgi14601 4 114924507 to 114926467 1960 CpG island CpG island 14601
Foxe3 4 114925147 to 114926013 866 - protein coding gene forkhead box E3
Tssr42819 4 114925581 to 114925592 11 - TSS region transcription start site region 42819
Tssr42820 4 114926064 to 114926069 5 - TSS region transcription start site region 42820
Gm40229 4 114946813 to 114950848 4035 - lncRNA gene predicted gene, 40229
Cmpk1 4 114960613 to 114987228 26615 - protein coding gene cytidine monophosphate (UMP-CMP) kinase 1
Tssr42821 4 114970512 to 114970516 4 - TSS region transcription start site region 42821
Cpgi14602 4 114986352 to 114987592 1240 CpG island CpG island 14602
Tssr38423 4 114986664 to 114986684 20 + TSS region transcription start site region 38423
Tssr42822 4 114987125 to 114987203 78 - TSS region transcription start site region 42822
Tssr42823 4 114987220 to 114987256 36 - TSS region transcription start site region 42823
Tssr38424 4 114987259 to 114987306 47 + TSS region transcription start site region 38424
Tssr38425 4 114987324 to 114987337 13 + TSS region transcription start site region 38425
Gm24045 4 114987964 to 114988061 97 + unclassified non-coding RNA gene predicted gene, 24045
Cpgi14603 4 114999846 to 115000482 636 CpG island CpG island 14603
Tssr38426 4 115000156 to 115000170 14 + TSS region transcription start site region 38426
Stil 4 115000159 to 115043196 43037 + protein coding gene Scl/Tal1 interrupting locus
Tssr38427 4 115000174 to 115000189 15 + TSS region transcription start site region 38427
Tssr38428 4 115000190 to 115000209 19 + TSS region transcription start site region 38428
Tssr38429 4 115000221 to 115000229 8 + TSS region transcription start site region 38429
Tssr38430 4 115000234 to 115000244 10 + TSS region transcription start site region 38430
Tssr38431 4 115000247 to 115000268 21 + TSS region transcription start site region 38431
Tssr1266 4 115004745 to 115004749 4 + TSS region transcription start site region 1266
Cpgi14604 4 115052531 to 115053044 513 CpG island CpG island 14604
Cpgi14605 4 115056293 to 115058111 1818 CpG island CpG island 14605
Tal1 4 115056426 to 115071755 15329 + protein coding gene T cell acute lymphocytic leukemia 1
Tssr38432 4 115056738 to 115056749 11 + TSS region transcription start site region 38432
Tssr38433 4 115056763 to 115056782 19 + TSS region transcription start site region 38433
Tssr38434 4 115057010 to 115057039 29 + TSS region transcription start site region 38434
Tssr38435 4 115057041 to 115057060 19 + TSS region transcription start site region 38435
Tssr38436 4 115057116 to 115057127 11 + TSS region transcription start site region 38436
Tssr38437 4 115057352 to 115057407 55 + TSS region transcription start site region 38437
Tssr38438 4 115057410 to 115057437 27 + TSS region transcription start site region 38438
Tssr42824 4 115057507 to 115057522 15 - TSS region transcription start site region 42824
Gm33786 4 115057622 to 115058223 601 - lncRNA gene predicted gene, 33786
Tssr38439 4 115057649 to 115057671 22 + TSS region transcription start site region 38439
Tssr38440 4 115057683 to 115057701 18 + TSS region transcription start site region 38440
Tssr38441 4 115059507 to 115059553 46 + TSS region transcription start site region 38441
Tssr38442 4 115059554 to 115059561 7 + TSS region transcription start site region 38442
Tssr38443 4 115062841 to 115062861 20 + TSS region transcription start site region 38443
Cpgi14606 4 115062855 to 115064190 1335 CpG island CpG island 14606
Tssr38444 4 115063371 to 115063385 14 + TSS region transcription start site region 38444
Tssr38445 4 115065107 to 115065110 3 + TSS region transcription start site region 38445
Tssr42825 4 115074909 to 115074920 11 - TSS region transcription start site region 42825
Pdzk1ip1 4 115088708 to 115093894 5186 + protein coding gene PDZK1 interacting protein 1
Tssr38446 4 115088734 to 115088769 35 + TSS region transcription start site region 38446
Tssr38447 4 115088779 to 115088790 11 + TSS region transcription start site region 38447
Tssr38448 4 115088863 to 115088872 9 + TSS region transcription start site region 38448
Tssr38449 4 115088905 to 115088909 4 + TSS region transcription start site region 38449
Tssr38450 4 115088914 to 115088925 11 + TSS region transcription start site region 38450
Tssr38451 4 115088990 to 115089149 159 + TSS region transcription start site region 38451
Tssr38452 4 115089155 to 115089159 4 + TSS region transcription start site region 38452
Tssr38453 4 115090160 to 115090165 5 + TSS region transcription start site region 38453
Tssr38454 4 115090168 to 115090169 1 + TSS region transcription start site region 38454
Tssr38455 4 115090188 to 115090228 40 + TSS region transcription start site region 38455
Tssr1267 4 115090996 to 115091006 10 + TSS region transcription start site region 1267
Tssr38456 4 115093582 to 115093608 26 + TSS region transcription start site region 38456
Cpgi14607 4 115095751 to 115096003 252 CpG island CpG island 14607
Tssr38457 4 115096136 to 115096172 36 + TSS region transcription start site region 38457
Cyp4x1 4 115108682 to 115133977 25295 - protein coding gene cytochrome P450, family 4, subfamily x, polypeptide 1
Cpgi14608 4 115133732 to 115134271 539 CpG island CpG island 14608
Cyp4x1os 4 115133832 to 115137864 4032 + antisense lncRNA gene cytochrome P450, family 4, subfamily x, polypeptide 1, opposite strand
Tssr42826 4 115134063 to 115134084 21 - TSS region transcription start site region 42826
Tssr42827 4 115134104 to 115134121 17 - TSS region transcription start site region 42827
Cyp4a28-ps 4 115138568 to 115156506 17938 - pseudogene cytochrome P450, family 4, subfamily a, polypeptide 28, pseudogene
D4Mit248 4 115173512 to 115173723 211 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 248
Nidds 4 115173580 to 129572122 14398542 QTL non-insulin-dependent diabetes mellitus in SJL
D4Mit278 4 115173580 to 115173722 142 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 278
Cyp4a29-ps1 4 115175798 to 115176843 1045 + pseudogene cytochrome P450, family 4, subfamily a, polypeptide 29, pseudogene 1
Gm12834 4 115238755 to 115241577 2822 - pseudogene predicted gene 12834
Tssr38458 4 115242040 to 115242048 8 + TSS region transcription start site region 38458
Cyp4a29 4 115242084 to 115254557 12473 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 29
Cyp4a12a 4 115299046 to 115332815 33769 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 12a
Tssr38459 4 115332019 to 115332035 16 + TSS region transcription start site region 38459
Cyp4a30-ps 4 115343788 to 115363112 19324 + pseudogene cytochrome P450, family 4, subfamily a, member 30, pseudogene