Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:113629906-115046623

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Skint5 4 113477891 to 113999503 521612 - protein coding gene selection and upkeep of intraepithelial T cells 5
D4Mit247b 4 113666335 to 113666503 168 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 247b
Tssr42811 4 113999487 to 113999497 10 - TSS region transcription start site region 42811
Tssr42812 4 113999500 to 113999511 11 - TSS region transcription start site region 42812
Tssr1265 4 113999515 to 113999518 3 - TSS region transcription start site region 1265
Tssr42813 4 113999520 to 113999531 11 - TSS region transcription start site region 42813
Gm12825 4 114096390 to 114097401 1011 - pseudogene predicted gene 12825
Skint11 4 114163384 to 114245028 81644 + protein coding gene selection and upkeep of intraepithelial T cells 11
Tssr38408 4 114163420 to 114163434 14 + TSS region transcription start site region 38408
Tssr38409 4 114163437 to 114163448 11 + TSS region transcription start site region 38409
Tssr38410 4 114163458 to 114163470 12 + TSS region transcription start site region 38410
Gm15741 4 114165123 to 114165876 753 - pseudogene predicted gene 15741
Gm40228 4 114329906 to 114346623 16717 - lncRNA gene predicted gene, 40228
D4Mit74 4 114353855 to 114354033 178 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 74
Tssr38411 4 114388434 to 114388440 6 + TSS region transcription start site region 38411
Cpgi14592 4 114405595 to 114407255 1660 CpG island CpG island 14592
Tssr38412 4 114406035 to 114406053 18 + TSS region transcription start site region 38412
Tssr38413 4 114406206 to 114406256 50 + TSS region transcription start site region 38413
Tssr38414 4 114406667 to 114406710 43 + TSS region transcription start site region 38414
Tssr38415 4 114406717 to 114406733 16 + TSS region transcription start site region 38415
Trabd2b 4 114406724 to 114615098 208374 + protein coding gene TraB domain containing 2B
Gm33710 4 114413971 to 114414949 978 - lncRNA gene predicted gene, 33710
Tssr38416 4 114445118 to 114445122 4 + TSS region transcription start site region 38416
Tssr42814 4 114470901 to 114470905 4 - TSS region transcription start site region 42814
D4Mit332 4 114491994 to 114492142 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 332
Tssr38417 4 114511488 to 114511494 6 + TSS region transcription start site region 38417
Gm33655 4 114576917 to 114592223 15306 - lncRNA gene predicted gene, 33655
Tssr38418 4 114610606 to 114610610 4 + TSS region transcription start site region 38418
Tssr42815 4 114643122 to 114643126 4 - TSS region transcription start site region 42815
Cpgi14593 4 114648621 to 114649018 397 CpG island CpG island 14593
Cpgi14594 4 114665732 to 114666011 279 CpG island CpG island 14594
Cpgi14595 4 114666425 to 114667104 679 CpG island CpG island 14595
Gm28864 4 114672697 to 114673340 643 - lincRNA gene predicted gene 28864
Gm12829 4 114680340 to 114683404 3064 + lincRNA gene predicted gene 12829
Tssr38419 4 114680769 to 114680782 13 + TSS region transcription start site region 38419
Tssr42816 4 114688716 to 114688732 16 - TSS region transcription start site region 42816
D4Mit307 4 114746033 to 114746155 122 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 307
D4Mit52 4 114800671 to 114800785 114 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 52
9130410C08Rik 4 114816093 to 114824878 8785 - antisense lncRNA gene RIKEN cDNA 9130410C08 gene
D4Mit220 4 114816859 to 114816988 129 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 220
Cpgi14596 4 114821491 to 114822249 758 CpG island CpG island 14596
Gm12830 4 114821722 to 114856166 34444 + protein coding gene predicted gene 12830
Cpgi14597 4 114843068 to 114843789 721 CpG island CpG island 14597
Gm23230 4 114844985 to 114845117 132 - snRNA gene predicted gene, 23230
Cpgi14598 4 114901803 to 114902550 747 CpG island CpG island 14598
Cpgi14599 4 114902606 to 114902936 330 CpG island CpG island 14599
Foxd2 4 114906282 to 114908873 2591 - protein coding gene forkhead box D2
Cpgi14600 4 114906971 to 114909805 2834 CpG island CpG island 14600
Tssr42817 4 114908892 to 114908914 22 - TSS region transcription start site region 42817
Tssr42818 4 114908919 to 114908946 27 - TSS region transcription start site region 42818
Tssr38420 4 114909252 to 114909269 17 + TSS region transcription start site region 38420
Tssr38421 4 114909271 to 114909322 51 + TSS region transcription start site region 38421
Foxd2os 4 114909289 to 114921118 11829 + lncRNA gene forkhead box D2, opposite strand
Tssr38422 4 114909844 to 114909848 4 + TSS region transcription start site region 38422
Cpgi14601 4 114924507 to 114926467 1960 CpG island CpG island 14601
Foxe3 4 114925147 to 114926013 866 - protein coding gene forkhead box E3
Tssr42819 4 114925581 to 114925592 11 - TSS region transcription start site region 42819
Tssr42820 4 114926064 to 114926069 5 - TSS region transcription start site region 42820
Gm40229 4 114946813 to 114950848 4035 - lncRNA gene predicted gene, 40229
Cmpk1 4 114960613 to 114987228 26615 - protein coding gene cytidine monophosphate (UMP-CMP) kinase 1
Tssr42821 4 114970512 to 114970516 4 - TSS region transcription start site region 42821
Cpgi14602 4 114986352 to 114987592 1240 CpG island CpG island 14602
Tssr38423 4 114986664 to 114986684 20 + TSS region transcription start site region 38423
Tssr42822 4 114987125 to 114987203 78 - TSS region transcription start site region 42822
Tssr42823 4 114987220 to 114987256 36 - TSS region transcription start site region 42823
Tssr38424 4 114987259 to 114987306 47 + TSS region transcription start site region 38424
Tssr38425 4 114987324 to 114987337 13 + TSS region transcription start site region 38425
Gm24045 4 114987964 to 114988061 97 + unclassified non-coding RNA gene predicted gene, 24045
Cpgi14603 4 114999846 to 115000482 636 CpG island CpG island 14603
Tssr38426 4 115000156 to 115000170 14 + TSS region transcription start site region 38426
Stil 4 115000159 to 115043196 43037 + protein coding gene Scl/Tal1 interrupting locus
Tssr38427 4 115000174 to 115000189 15 + TSS region transcription start site region 38427
Tssr38428 4 115000190 to 115000209 19 + TSS region transcription start site region 38428
Tssr38429 4 115000221 to 115000229 8 + TSS region transcription start site region 38429
Tssr38430 4 115000234 to 115000244 10 + TSS region transcription start site region 38430
Tssr38431 4 115000247 to 115000268 21 + TSS region transcription start site region 38431
Tssr1266 4 115004745 to 115004749 4 + TSS region transcription start site region 1266