Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:113551425-115782104

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Skint5 4 113477891 to 113999503 521612 - protein coding gene selection and upkeep of intraepithelial T cells 5
D4Mit247b 4 113666335 to 113666503 168 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 247b
Tssr42811 4 113999487 to 113999497 10 - TSS region transcription start site region 42811
Tssr42812 4 113999500 to 113999511 11 - TSS region transcription start site region 42812
Tssr1265 4 113999515 to 113999518 3 - TSS region transcription start site region 1265
Tssr42813 4 113999520 to 113999531 11 - TSS region transcription start site region 42813
Gm12825 4 114096390 to 114097401 1011 - pseudogene predicted gene 12825
Skint11 4 114163384 to 114245028 81644 + protein coding gene selection and upkeep of intraepithelial T cells 11
Tssr38408 4 114163420 to 114163434 14 + TSS region transcription start site region 38408
Tssr38409 4 114163437 to 114163448 11 + TSS region transcription start site region 38409
Tssr38410 4 114163458 to 114163470 12 + TSS region transcription start site region 38410
Gm15741 4 114165123 to 114165876 753 - pseudogene predicted gene 15741
Gm40228 4 114329906 to 114346623 16717 - lncRNA gene predicted gene, 40228
D4Mit74 4 114353855 to 114354033 178 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 74
Tssr38411 4 114388434 to 114388440 6 + TSS region transcription start site region 38411
Cpgi14592 4 114405595 to 114407255 1660 CpG island CpG island 14592
Tssr38412 4 114406035 to 114406053 18 + TSS region transcription start site region 38412
Tssr38413 4 114406206 to 114406256 50 + TSS region transcription start site region 38413
Tssr38414 4 114406667 to 114406710 43 + TSS region transcription start site region 38414
Tssr38415 4 114406717 to 114406733 16 + TSS region transcription start site region 38415
Trabd2b 4 114406724 to 114615098 208374 + protein coding gene TraB domain containing 2B
Gm33710 4 114413971 to 114414949 978 - lncRNA gene predicted gene, 33710
Tssr38416 4 114445118 to 114445122 4 + TSS region transcription start site region 38416
Tssr42814 4 114470901 to 114470905 4 - TSS region transcription start site region 42814
D4Mit332 4 114491994 to 114492142 148 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 332
Tssr38417 4 114511488 to 114511494 6 + TSS region transcription start site region 38417
Gm33655 4 114576917 to 114592223 15306 - lncRNA gene predicted gene, 33655
Tssr38418 4 114610606 to 114610610 4 + TSS region transcription start site region 38418
Tssr42815 4 114643122 to 114643126 4 - TSS region transcription start site region 42815
Cpgi14593 4 114648621 to 114649018 397 CpG island CpG island 14593
Cpgi14594 4 114665732 to 114666011 279 CpG island CpG island 14594
Cpgi14595 4 114666425 to 114667104 679 CpG island CpG island 14595
Gm28864 4 114672697 to 114673340 643 - lincRNA gene predicted gene 28864
Gm12829 4 114680340 to 114683404 3064 + lincRNA gene predicted gene 12829
Tssr38419 4 114680769 to 114680782 13 + TSS region transcription start site region 38419
Tssr42816 4 114688716 to 114688732 16 - TSS region transcription start site region 42816
D4Mit307 4 114746033 to 114746155 122 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 307
D4Mit52 4 114800671 to 114800785 114 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 52
9130410C08Rik 4 114816093 to 114824878 8785 - antisense lncRNA gene RIKEN cDNA 9130410C08 gene
D4Mit220 4 114816859 to 114816988 129 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 220
Cpgi14596 4 114821491 to 114822249 758 CpG island CpG island 14596
Gm12830 4 114821722 to 114856166 34444 + protein coding gene predicted gene 12830
Cpgi14597 4 114843068 to 114843789 721 CpG island CpG island 14597
Gm23230 4 114844985 to 114845117 132 - snRNA gene predicted gene, 23230
Cpgi14598 4 114901803 to 114902550 747 CpG island CpG island 14598
Cpgi14599 4 114902606 to 114902936 330 CpG island CpG island 14599
Foxd2 4 114906282 to 114908873 2591 - protein coding gene forkhead box D2
Cpgi14600 4 114906971 to 114909805 2834 CpG island CpG island 14600
Tssr42817 4 114908892 to 114908914 22 - TSS region transcription start site region 42817
Tssr42818 4 114908919 to 114908946 27 - TSS region transcription start site region 42818
Tssr38420 4 114909252 to 114909269 17 + TSS region transcription start site region 38420
Tssr38421 4 114909271 to 114909322 51 + TSS region transcription start site region 38421
Foxd2os 4 114909289 to 114921118 11829 + lncRNA gene forkhead box D2, opposite strand
Tssr38422 4 114909844 to 114909848 4 + TSS region transcription start site region 38422
Cpgi14601 4 114924507 to 114926467 1960 CpG island CpG island 14601
Foxe3 4 114925147 to 114926013 866 - protein coding gene forkhead box E3
Tssr42819 4 114925581 to 114925592 11 - TSS region transcription start site region 42819
Tssr42820 4 114926064 to 114926069 5 - TSS region transcription start site region 42820
Gm40229 4 114946813 to 114950848 4035 - lncRNA gene predicted gene, 40229
Cmpk1 4 114960613 to 114987228 26615 - protein coding gene cytidine monophosphate (UMP-CMP) kinase 1
Tssr42821 4 114970512 to 114970516 4 - TSS region transcription start site region 42821
Cpgi14602 4 114986352 to 114987592 1240 CpG island CpG island 14602
Tssr38423 4 114986664 to 114986684 20 + TSS region transcription start site region 38423
Tssr42822 4 114987125 to 114987203 78 - TSS region transcription start site region 42822
Tssr42823 4 114987220 to 114987256 36 - TSS region transcription start site region 42823
Tssr38424 4 114987259 to 114987306 47 + TSS region transcription start site region 38424
Tssr38425 4 114987324 to 114987337 13 + TSS region transcription start site region 38425
Gm24045 4 114987964 to 114988061 97 + unclassified non-coding RNA gene predicted gene, 24045
Cpgi14603 4 114999846 to 115000482 636 CpG island CpG island 14603
Tssr38426 4 115000156 to 115000170 14 + TSS region transcription start site region 38426
Stil 4 115000159 to 115043196 43037 + protein coding gene Scl/Tal1 interrupting locus
Tssr38427 4 115000174 to 115000189 15 + TSS region transcription start site region 38427
Tssr38428 4 115000190 to 115000209 19 + TSS region transcription start site region 38428
Tssr38429 4 115000221 to 115000229 8 + TSS region transcription start site region 38429
Tssr38430 4 115000234 to 115000244 10 + TSS region transcription start site region 38430
Tssr38431 4 115000247 to 115000268 21 + TSS region transcription start site region 38431
Tssr1266 4 115004745 to 115004749 4 + TSS region transcription start site region 1266
Cpgi14604 4 115052531 to 115053044 513 CpG island CpG island 14604
Cpgi14605 4 115056293 to 115058111 1818 CpG island CpG island 14605
Tal1 4 115056426 to 115071755 15329 + protein coding gene T cell acute lymphocytic leukemia 1
Tssr38432 4 115056738 to 115056749 11 + TSS region transcription start site region 38432
Tssr38433 4 115056763 to 115056782 19 + TSS region transcription start site region 38433
Tssr38434 4 115057010 to 115057039 29 + TSS region transcription start site region 38434
Tssr38435 4 115057041 to 115057060 19 + TSS region transcription start site region 38435
Tssr38436 4 115057116 to 115057127 11 + TSS region transcription start site region 38436
Tssr38437 4 115057352 to 115057407 55 + TSS region transcription start site region 38437
Tssr38438 4 115057410 to 115057437 27 + TSS region transcription start site region 38438
Tssr42824 4 115057507 to 115057522 15 - TSS region transcription start site region 42824
Gm33786 4 115057622 to 115058223 601 - lncRNA gene predicted gene, 33786
Tssr38439 4 115057649 to 115057671 22 + TSS region transcription start site region 38439
Tssr38440 4 115057683 to 115057701 18 + TSS region transcription start site region 38440
Tssr38441 4 115059507 to 115059553 46 + TSS region transcription start site region 38441
Tssr38442 4 115059554 to 115059561 7 + TSS region transcription start site region 38442
Tssr38443 4 115062841 to 115062861 20 + TSS region transcription start site region 38443
Cpgi14606 4 115062855 to 115064190 1335 CpG island CpG island 14606
Tssr38444 4 115063371 to 115063385 14 + TSS region transcription start site region 38444
Tssr38445 4 115065107 to 115065110 3 + TSS region transcription start site region 38445
Tssr42825 4 115074909 to 115074920 11 - TSS region transcription start site region 42825
Pdzk1ip1 4 115088708 to 115093894 5186 + protein coding gene PDZK1 interacting protein 1
Tssr38446 4 115088734 to 115088769 35 + TSS region transcription start site region 38446
Tssr38447 4 115088779 to 115088790 11 + TSS region transcription start site region 38447
Tssr38448 4 115088863 to 115088872 9 + TSS region transcription start site region 38448
Tssr38449 4 115088905 to 115088909 4 + TSS region transcription start site region 38449
Tssr38450 4 115088914 to 115088925 11 + TSS region transcription start site region 38450
Tssr38451 4 115088990 to 115089149 159 + TSS region transcription start site region 38451
Tssr38452 4 115089155 to 115089159 4 + TSS region transcription start site region 38452
Tssr38453 4 115090160 to 115090165 5 + TSS region transcription start site region 38453
Tssr38454 4 115090168 to 115090169 1 + TSS region transcription start site region 38454
Tssr38455 4 115090188 to 115090228 40 + TSS region transcription start site region 38455
Tssr1267 4 115090996 to 115091006 10 + TSS region transcription start site region 1267
Tssr38456 4 115093582 to 115093608 26 + TSS region transcription start site region 38456
Cpgi14607 4 115095751 to 115096003 252 CpG island CpG island 14607
Tssr38457 4 115096136 to 115096172 36 + TSS region transcription start site region 38457
Cyp4x1 4 115108682 to 115133977 25295 - protein coding gene cytochrome P450, family 4, subfamily x, polypeptide 1
Cpgi14608 4 115133732 to 115134271 539 CpG island CpG island 14608
Cyp4x1os 4 115133832 to 115137864 4032 + antisense lncRNA gene cytochrome P450, family 4, subfamily x, polypeptide 1, opposite strand
Tssr42826 4 115134063 to 115134084 21 - TSS region transcription start site region 42826
Tssr42827 4 115134104 to 115134121 17 - TSS region transcription start site region 42827
Cyp4a28-ps 4 115138568 to 115156506 17938 - pseudogene cytochrome P450, family 4, subfamily a, polypeptide 28, pseudogene
D4Mit248 4 115173512 to 115173723 211 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 248
D4Mit278 4 115173580 to 115173722 142 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 278
Nidds 4 115173580 to 129572122 14398542 QTL non-insulin-dependent diabetes mellitus in SJL
Cyp4a29-ps1 4 115175798 to 115176843 1045 + pseudogene cytochrome P450, family 4, subfamily a, polypeptide 29, pseudogene 1
Gm12834 4 115238755 to 115241577 2822 - pseudogene predicted gene 12834
Tssr38458 4 115242040 to 115242048 8 + TSS region transcription start site region 38458
Cyp4a29 4 115242084 to 115254557 12473 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 29
Cyp4a12a 4 115299046 to 115332815 33769 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 12a
Tssr38459 4 115332019 to 115332035 16 + TSS region transcription start site region 38459
Cyp4a30-ps 4 115343788 to 115363112 19324 + pseudogene cytochrome P450, family 4, subfamily a, member 30, pseudogene
Cyp4a12b 4 115411624 to 115439034 27410 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 12B
Gm12837 4 115416082 to 115416454 372 - pseudogene predicted gene 12837
Tssr38460 4 115452571 to 115452578 7 + TSS region transcription start site region 38460
Cyp4a30b 4 115452604 to 115471062 18458 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 30b
Cpgi14609 4 115453761 to 115453938 177 CpG island CpG island 14609
Gm12838 4 115453792 to 115454116 324 - pseudogene predicted gene 12838
Gm12833 4 115480800 to 115481276 476 + pseudogene predicted gene 12833
Cyp4a14 4 115486200 to 115496142 9942 - protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 14
Tssr42828 4 115486890 to 115486902 12 - TSS region transcription start site region 42828
Tssr42829 4 115487067 to 115487117 50 - TSS region transcription start site region 42829
Tssr42830 4 115487244 to 115487276 32 - TSS region transcription start site region 42830
Tssr42831 4 115491144 to 115491155 11 - TSS region transcription start site region 42831
Tssr42832 4 115492114 to 115492127 13 - TSS region transcription start site region 42832
Tssr42833 4 115496129 to 115496147 18 - TSS region transcription start site region 42833
Cyp4a10 4 115518287 to 115533649 15362 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 10
Tssr38461 4 115532606 to 115532638 32 + TSS region transcription start site region 38461
Cyp4b1-ps1 4 115543385 to 115545064 1679 - pseudogene cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 1
Tssr1268 4 115563620 to 115563631 11 + TSS region transcription start site region 1268
Cyp4a31 4 115563649 to 115579015 15366 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 31
Tssr38462 4 115563679 to 115563699 20 + TSS region transcription start site region 38462
D4Mit352a 4 115565401 to 115565506 105 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 352a
Cyp4b1-ps2 4 115582286 to 115583144 858 - pseudogene cytochrome P450, family 4, subfamily b, polypeptide 1, pseudogene 2
Cyp4a32 4 115600969 to 115621602 20633 + protein coding gene cytochrome P450, family 4, subfamily a, polypeptide 32
D4Mit352b 4 115602651 to 115602763 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 352b
Cyp4b1 4 115624728 to 115647705 22977 - protein coding gene cytochrome P450, family 4, subfamily b, polypeptide 1
Tssr42834 4 115647710 to 115647728 18 - TSS region transcription start site region 42834
Tssr38463 4 115652319 to 115652320 1 + TSS region transcription start site region 38463
Gm12848 4 115652642 to 115653477 835 + pseudogene predicted gene 12848
Cpgi14610 4 115657371 to 115657660 289 CpG island CpG island 14610
Gm12849 4 115707251 to 115708303 1052 + pseudogene predicted gene 12849
Cpgi14611 4 115737465 to 115738163 698 CpG island CpG island 14611
Tssr38464 4 115737738 to 115737752 14 + TSS region transcription start site region 38464
Tssr38465 4 115737754 to 115737810 56 + TSS region transcription start site region 38465
Efcab14 4 115737779 to 115777328 39549 + protein coding gene EF-hand calcium binding domain 14
Tssr38466 4 115737823 to 115737840 17 + TSS region transcription start site region 38466
Tssr38467 4 115738413 to 115738447 34 + TSS region transcription start site region 38467
Cpgi14612 4 115738678 to 115738834 156 CpG island CpG island 14612
Tssr38468 4 115775522 to 115775533 11 + TSS region transcription start site region 38468
Tssr38469 4 115775596 to 115775609 13 + TSS region transcription start site region 38469
Tssr38470 4 115775995 to 115776000 5 + TSS region transcription start site region 38470
Tex38 4 115779834 to 115781018 1184 - protein coding gene testis expressed 38
Tssr42835 4 115781012 to 115781023 11 - TSS region transcription start site region 42835
Tssr42836 4 115781045 to 115781064 19 - TSS region transcription start site region 42836
Tssr42837 4 115781090 to 115781104 14 - TSS region transcription start site region 42837
Tssr42838 4 115781115 to 115781121 6 - TSS region transcription start site region 42838
Tssr38471 4 115781191 to 115781203 12 + TSS region transcription start site region 38471