Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:11226139-12000007

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ints8 4 11199158 to 11254258 55100 - protein coding gene integrator complex subunit 8
Tssr40922 4 11235544 to 11235565 21 - TSS region transcription start site region 40922
Tssr40923 4 11248206 to 11248231 25 - TSS region transcription start site region 40923
Cpgi14032 4 11253439 to 11254482 1043 CpG island CpG island 14032
Tssr40924 4 11254194 to 11254246 52 - TSS region transcription start site region 40924
Tssr40925 4 11254248 to 11254266 18 - TSS region transcription start site region 40925
Dpy19l4 4 11261315 to 11322137 60822 - protein coding gene dpy-19-like 4 (C. elegans)
Gm22940 4 11279265 to 11279419 154 - snRNA gene predicted gene, 22940
Cpgi14033 4 11321604 to 11322506 902 CpG island CpG island 14033
Tssr36477 4 11321900 to 11321913 13 + TSS region transcription start site region 36477
Tssr36478 4 11321930 to 11321937 7 + TSS region transcription start site region 36478
Gm26663 4 11321944 to 11342953 21009 + lincRNA gene predicted gene, 26663
Tssr40926 4 11322076 to 11322089 13 - TSS region transcription start site region 40926
Tssr40927 4 11322109 to 11322146 37 - TSS region transcription start site region 40927
Tssr36479 4 11322230 to 11322248 18 + TSS region transcription start site region 36479
Esrp1 4 11331933 to 11386783 54850 - protein coding gene epithelial splicing regulatory protein 1
Tssr36480 4 11342401 to 11342403 2 + TSS region transcription start site region 36480
Cpgi14034 4 11385060 to 11385756 696 CpG island CpG island 14034
Tssr40928 4 11385426 to 11385437 11 - TSS region transcription start site region 40928
Cpgi14035 4 11386365 to 11388663 2298 CpG island CpG island 14035
Tssr40929 4 11386526 to 11386539 13 - TSS region transcription start site region 40929
Tssr40930 4 11386568 to 11386598 30 - TSS region transcription start site region 40930
Tssr1121 4 11386613 to 11386629 16 - TSS region transcription start site region 1121
Tssr40931 4 11386633 to 11386652 19 - TSS region transcription start site region 40931
Tssr40932 4 11386688 to 11386702 14 - TSS region transcription start site region 40932
Tssr40933 4 11386718 to 11386730 12 - TSS region transcription start site region 40933
Tssr40934 4 11386734 to 11386754 20 - TSS region transcription start site region 40934
Tssr40935 4 11386757 to 11386775 18 - TSS region transcription start site region 40935
Gm35631 4 11387132 to 11389412 2280 + lncRNA gene predicted gene, 35631
Tssr40936 4 11393886 to 11393915 29 - TSS region transcription start site region 40936
Cpgi14036 4 11400075 to 11400303 228 CpG island CpG island 14036
Gm11821 4 11400346 to 11401324 978 + pseudogene predicted gene 11821
Gm11822 4 11420350 to 11420764 414 - pseudogene predicted gene 11822
Cpgi14037 4 11485580 to 11486468 888 CpG island CpG island 14037
Tssr36481 4 11485947 to 11485964 17 + TSS region transcription start site region 36481
Virma 4 11485958 to 11550684 64726 + protein coding gene vir like m6A methyltransferase associated
Tssr36482 4 11485966 to 11485973 7 + TSS region transcription start site region 36482
Tssr36483 4 11486002 to 11486045 43 + TSS region transcription start site region 36483
Gm11831 4 11501456 to 11502839 1383 - antisense lncRNA gene predicted gene 11831
Tssr36484 4 11535281 to 11535285 4 + TSS region transcription start site region 36484
Tssr36485 4 11546068 to 11546095 27 + TSS region transcription start site region 36485
Gm35693 4 11551434 to 11558931 7497 - lncRNA gene predicted gene, 35693
Cpgi14038 4 11558638 to 11559272 634 CpG island CpG island 14038
Tssr40937 4 11558754 to 11558763 9 - TSS region transcription start site region 40937
Tssr36486 4 11558914 to 11558979 65 + TSS region transcription start site region 36486
Rad54b 4 11558922 to 11615805 56883 + protein coding gene RAD54 homolog B (S. cerevisiae)
Tssr40938 4 11559191 to 11559202 11 - TSS region transcription start site region 40938
Tssr36487 4 11573617 to 11573620 3 + TSS region transcription start site region 36487
Tssr36488 4 11579647 to 11579674 27 + TSS region transcription start site region 36488
Fsbp 4 11579665 to 11587591 7926 + protein coding gene fibrinogen silencer binding protein
Tssr36489 4 11604484 to 11604488 4 + TSS region transcription start site region 36489
Gm11832 4 11611139 to 11615007 3868 - antisense lncRNA gene predicted gene 11832
Tssr40939 4 11615005 to 11615012 7 - TSS region transcription start site region 40939
D4Mit261 4 11628624 to 11628744 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 261
Gm11833 4 11649647 to 11650499 852 - pseudogene predicted gene 11833
Gm35884 4 11663967 to 11676178 12211 - lncRNA gene predicted gene, 35884
Tssr36490 4 11694782 to 11694798 16 + TSS region transcription start site region 36490
Tssr36491 4 11694803 to 11694809 6 + TSS region transcription start site region 36491
Tssr36492 4 11694835 to 11694842 7 + TSS region transcription start site region 36492
Cpgi14039 4 11704050 to 11704944 894 CpG island CpG island 14039
Tssr36493 4 11704439 to 11704454 15 + TSS region transcription start site region 36493
Gem 4 11704457 to 11714752 10295 + protein coding gene GTP binding protein (gene overexpressed in skeletal muscle)
Tssr40940 4 11738077 to 11738079 2 - TSS region transcription start site region 40940
Cdh17 4 11758157 to 11817905 59748 + protein coding gene cadherin 17
Tssr36494 4 11758174 to 11758220 46 + TSS region transcription start site region 36494
Tssr36495 4 11758224 to 11758234 10 + TSS region transcription start site region 36495
Tssr36496 4 11761010 to 11761013 3 + TSS region transcription start site region 36496
Tssr36497 4 11765268 to 11765285 17 + TSS region transcription start site region 36497
Tssr36498 4 11810283 to 11810305 22 + TSS region transcription start site region 36498
Cpgi14040 4 11914593 to 11914853 260 CpG island CpG island 14040
Gm22477 4 11928424 to 11928739 315 + unclassified non-coding RNA gene predicted gene, 22477
Gm25002 4 11948887 to 11948950 63 + miRNA gene predicted gene, 25002
Pdp1 4 11958183 to 11966450 8267 - protein coding gene pyruvate dehyrogenase phosphatase catalytic subunit 1
Tssr40941 4 11958944 to 11958946 2 - TSS region transcription start site region 40941
Cpgi14041 4 11965552 to 11966994 1442 CpG island CpG island 14041
Tssr40942 4 11965671 to 11965678 7 - TSS region transcription start site region 40942
Tssr40943 4 11965699 to 11965752 53 - TSS region transcription start site region 40943
Tssr36499 4 11965895 to 11965909 14 + TSS region transcription start site region 36499
Tssr40944 4 11966324 to 11966335 11 - TSS region transcription start site region 40944
Tssr40945 4 11966368 to 11966461 93 - TSS region transcription start site region 40945
1700123M08Rik 4 11966565 to 11994280 27715 + lncRNA gene RIKEN cDNA 1700123M08 gene
Tssr36500 4 11966627 to 11966674 47 + TSS region transcription start site region 36500
Gm10604 4 11979560 to 11981265 1705 - protein coding gene predicted gene 10604
Gm26895 4 11980669 to 11988471 7802 + lincRNA gene predicted gene, 26895
Gm11840 4 11999474 to 12009043 9569 - lincRNA gene predicted gene 11840