Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:111823100-113513494

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spata6 4 111719949 to 111829137 109188 + protein coding gene spermatogenesis associated 6
Tssr38393 4 111827982 to 111827996 14 + TSS region transcription start site region 38393
Cafq2 4 111875058 to 111875257 199 QTL caffeine metabolism QTL 2
D4Mit199 4 111875058 to 111875257 199 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 199
Slc5a9 4 111875374 to 111902796 27422 - protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 9
Tssr42799 4 111880598 to 111880614 16 - TSS region transcription start site region 42799
Tssr42800 4 111880643 to 111880677 34 - TSS region transcription start site region 42800
Tssr42801 4 111898695 to 111898725 30 - TSS region transcription start site region 42801
Tssr42802 4 111902783 to 111902801 18 - TSS region transcription start site region 42802
Skint8 4 111919555 to 111950361 30806 + protein coding gene selection and upkeep of intraepithelial T cells 8
Tssr38394 4 111972833 to 111972854 21 + TSS region transcription start site region 38394
Tssr38395 4 111972922 to 111972946 24 + TSS region transcription start site region 38395
Skint7 4 111972923 to 111988223 15300 + protein coding gene selection and upkeep of intraepithelial T cells 7
Tssr38396 4 111973032 to 111973072 40 + TSS region transcription start site region 38396
Gm25844 4 111988650 to 111988958 308 - unclassified non-coding RNA gene predicted gene, 25844
Tssr38397 4 112006189 to 112006199 10 + TSS region transcription start site region 38397
Tssr38398 4 112006245 to 112006273 28 + TSS region transcription start site region 38398
Skint1 4 112006269 to 112029538 23269 + protein coding gene selection and upkeep of intraepithelial T cells 1
Tssr38399 4 112006281 to 112006297 16 + TSS region transcription start site region 38399
Tssr38400 4 112034710 to 112034714 4 + TSS region transcription start site region 38400
Skint4 4 112072016 to 112168076 96060 + protein coding gene selection and upkeep of intraepithelial T cells 4
Tssr38401 4 112072640 to 112072656 16 + TSS region transcription start site region 38401
Tssr38402 4 112072658 to 112072674 16 + TSS region transcription start site region 38402
Tssr38403 4 112072676 to 112072685 9 + TSS region transcription start site region 38403
Gm12820 4 112121003 to 112121344 341 - pseudogene predicted gene 12820
Gm12815 4 112146098 to 112146232 134 - pseudogene predicted gene 12815
Skint3 4 112232245 to 112300468 68223 + protein coding gene selection and upkeep of intraepithelial T cells 3
Tssr38404 4 112232266 to 112232274 8 + TSS region transcription start site region 38404
Tssr1263 4 112232330 to 112232335 5 + TSS region transcription start site region 1263
Tssr38405 4 112232346 to 112232386 40 + TSS region transcription start site region 38405
Tssr1264 4 112232391 to 112232408 17 + TSS region transcription start site region 1264
Tssr38406 4 112284801 to 112284813 12 + TSS region transcription start site region 38406
Tssr38407 4 112288673 to 112288683 10 + TSS region transcription start site region 38407
Skint9 4 112385969 to 112433985 48016 - protein coding gene selection and upkeep of intraepithelial T cells 9
Tssr42803 4 112433979 to 112433993 14 - TSS region transcription start site region 42803
Tssr42804 4 112434005 to 112434014 9 - TSS region transcription start site region 42804
Gm12819 4 112512740 to 112521472 8732 + pseudogene predicted gene 12819
Gm12821 4 112537061 to 112537660 599 + pseudogene predicted gene 12821
Gm12814 4 112566407 to 112593053 26646 + pseudogene predicted gene 12814
Gm24099 4 112590772 to 112590878 106 - snRNA gene predicted gene, 24099
Skint2 4 112613597 to 112652248 38651 + protein coding gene selection and upkeep of intraepithelial T cells 2
D4Sh1 4 112668100 to 112668494 394 DNA segment DNA segment, Chr 4, Steve Hardies 1
Gm12817 4 112705170 to 112706236 1066 + pseudogene predicted gene 12817
Skint10 4 112711147 to 112774866 63719 - protein coding gene selection and upkeep of intraepithelial T cells 10
Gm18400 4 112772092 to 112773268 1176 + pseudogene predicted gene, 18400
Tssr42805 4 112774816 to 112774832 16 - TSS region transcription start site region 42805
Tssr42806 4 112774841 to 112774854 13 - TSS region transcription start site region 42806
Tssr42807 4 112774860 to 112774871 11 - TSS region transcription start site region 42807
Skint6 4 112804616 to 113286973 482357 - protein coding gene selection and upkeep of intraepithelial T cells 6
Gm12823 4 112923696 to 112945317 21621 + antisense lncRNA gene predicted gene 12823
D4Mit247a 4 112947170 to 112947317 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 247a
Gm12816 4 112955075 to 112956286 1211 - pseudogene predicted gene 12816
Gm12818 4 112978465 to 112979813 1348 - pseudogene predicted gene 12818
Cpgi14591 4 112979376 to 112979871 495 CpG island CpG island 14591
Tssr42808 4 113245311 to 113245314 3 - TSS region transcription start site region 42808
Tssr42809 4 113261328 to 113261331 3 - TSS region transcription start site region 42809
Tssr42810 4 113286955 to 113287004 49 - TSS region transcription start site region 42810
Gm12813 4 113368187 to 113394359 26172 + pseudogene predicted gene 12813
Skint5 4 113477891 to 113999503 521612 - protein coding gene selection and upkeep of intraepithelial T cells 5