Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:11164593-12664853

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trp53inp1 4 11156441 to 11174377 17936 + protein coding gene transformation related protein 53 inducible nuclear protein 1
Tssr36469 4 11165259 to 11165286 27 + TSS region transcription start site region 36469
Tssr36470 4 11169799 to 11169808 9 + TSS region transcription start site region 36470
Tssr36471 4 11169913 to 11169942 29 + TSS region transcription start site region 36471
Tssr36472 4 11171898 to 11171964 66 + TSS region transcription start site region 36472
Tssr36473 4 11173832 to 11173881 49 + TSS region transcription start site region 36473
A630034I12Rik 4 11175962 to 11191230 15268 - lncRNA gene RIKEN cDNA A630034I12 gene
Cpgi14031 4 11190312 to 11192465 2153 CpG island CpG island 14031
Tssr40920 4 11191214 to 11191233 19 - TSS region transcription start site region 40920
Ccne2 4 11191351 to 11204779 13428 + protein coding gene cyclin E2
Tssr36474 4 11191417 to 11191424 7 + TSS region transcription start site region 36474
Tssr36475 4 11191776 to 11191789 13 + TSS region transcription start site region 36475
Ints8 4 11199158 to 11254258 55100 - protein coding gene integrator complex subunit 8
Tssr36476 4 11202410 to 11202413 3 + TSS region transcription start site region 36476
Tssr40921 4 11209270 to 11209282 12 - TSS region transcription start site region 40921
Tssr40922 4 11235544 to 11235565 21 - TSS region transcription start site region 40922
Tssr40923 4 11248206 to 11248231 25 - TSS region transcription start site region 40923
Cpgi14032 4 11253439 to 11254482 1043 CpG island CpG island 14032
Tssr40924 4 11254194 to 11254246 52 - TSS region transcription start site region 40924
Tssr40925 4 11254248 to 11254266 18 - TSS region transcription start site region 40925
Dpy19l4 4 11261315 to 11322137 60822 - protein coding gene dpy-19-like 4 (C. elegans)
Gm22940 4 11279265 to 11279419 154 - snRNA gene predicted gene, 22940
Cpgi14033 4 11321604 to 11322506 902 CpG island CpG island 14033
Tssr36477 4 11321900 to 11321913 13 + TSS region transcription start site region 36477
Tssr36478 4 11321930 to 11321937 7 + TSS region transcription start site region 36478
Gm26663 4 11321944 to 11342953 21009 + lincRNA gene predicted gene, 26663
Tssr40926 4 11322076 to 11322089 13 - TSS region transcription start site region 40926
Tssr40927 4 11322109 to 11322146 37 - TSS region transcription start site region 40927
Tssr36479 4 11322230 to 11322248 18 + TSS region transcription start site region 36479
Esrp1 4 11331933 to 11386783 54850 - protein coding gene epithelial splicing regulatory protein 1
Tssr36480 4 11342401 to 11342403 2 + TSS region transcription start site region 36480
Cpgi14034 4 11385060 to 11385756 696 CpG island CpG island 14034
Tssr40928 4 11385426 to 11385437 11 - TSS region transcription start site region 40928
Cpgi14035 4 11386365 to 11388663 2298 CpG island CpG island 14035
Tssr40929 4 11386526 to 11386539 13 - TSS region transcription start site region 40929
Tssr40930 4 11386568 to 11386598 30 - TSS region transcription start site region 40930
Tssr1121 4 11386613 to 11386629 16 - TSS region transcription start site region 1121
Tssr40931 4 11386633 to 11386652 19 - TSS region transcription start site region 40931
Tssr40932 4 11386688 to 11386702 14 - TSS region transcription start site region 40932
Tssr40933 4 11386718 to 11386730 12 - TSS region transcription start site region 40933
Tssr40934 4 11386734 to 11386754 20 - TSS region transcription start site region 40934
Tssr40935 4 11386757 to 11386775 18 - TSS region transcription start site region 40935
Gm35631 4 11387132 to 11389412 2280 + lncRNA gene predicted gene, 35631
Tssr40936 4 11393886 to 11393915 29 - TSS region transcription start site region 40936
Cpgi14036 4 11400075 to 11400303 228 CpG island CpG island 14036
Gm11821 4 11400346 to 11401324 978 + pseudogene predicted gene 11821
Gm11822 4 11420350 to 11420764 414 - pseudogene predicted gene 11822
Cpgi14037 4 11485580 to 11486468 888 CpG island CpG island 14037
Tssr36481 4 11485947 to 11485964 17 + TSS region transcription start site region 36481
Virma 4 11485958 to 11550684 64726 + protein coding gene vir like m6A methyltransferase associated
Tssr36482 4 11485966 to 11485973 7 + TSS region transcription start site region 36482
Tssr36483 4 11486002 to 11486045 43 + TSS region transcription start site region 36483
Gm11831 4 11501456 to 11502839 1383 - antisense lncRNA gene predicted gene 11831
Tssr36484 4 11535281 to 11535285 4 + TSS region transcription start site region 36484
Tssr36485 4 11546068 to 11546095 27 + TSS region transcription start site region 36485
Gm35693 4 11551434 to 11558931 7497 - lncRNA gene predicted gene, 35693
Cpgi14038 4 11558638 to 11559272 634 CpG island CpG island 14038
Tssr40937 4 11558754 to 11558763 9 - TSS region transcription start site region 40937
Tssr36486 4 11558914 to 11558979 65 + TSS region transcription start site region 36486
Rad54b 4 11558922 to 11615805 56883 + protein coding gene RAD54 homolog B (S. cerevisiae)
Tssr40938 4 11559191 to 11559202 11 - TSS region transcription start site region 40938
Tssr36487 4 11573617 to 11573620 3 + TSS region transcription start site region 36487
Tssr36488 4 11579647 to 11579674 27 + TSS region transcription start site region 36488
Fsbp 4 11579665 to 11587591 7926 + protein coding gene fibrinogen silencer binding protein
Tssr36489 4 11604484 to 11604488 4 + TSS region transcription start site region 36489
Gm11832 4 11611139 to 11615007 3868 - antisense lncRNA gene predicted gene 11832
Tssr40939 4 11615005 to 11615012 7 - TSS region transcription start site region 40939
D4Mit261 4 11628624 to 11628744 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 261
Gm11833 4 11649647 to 11650499 852 - pseudogene predicted gene 11833
Gm35884 4 11663967 to 11676178 12211 - lncRNA gene predicted gene, 35884
Tssr36490 4 11694782 to 11694798 16 + TSS region transcription start site region 36490
Tssr36491 4 11694803 to 11694809 6 + TSS region transcription start site region 36491
Tssr36492 4 11694835 to 11694842 7 + TSS region transcription start site region 36492
Cpgi14039 4 11704050 to 11704944 894 CpG island CpG island 14039
Tssr36493 4 11704439 to 11704454 15 + TSS region transcription start site region 36493
Gem 4 11704457 to 11714752 10295 + protein coding gene GTP binding protein (gene overexpressed in skeletal muscle)
Tssr40940 4 11738077 to 11738079 2 - TSS region transcription start site region 40940
Cdh17 4 11758157 to 11817905 59748 + protein coding gene cadherin 17
Tssr36494 4 11758174 to 11758220 46 + TSS region transcription start site region 36494
Tssr36495 4 11758224 to 11758234 10 + TSS region transcription start site region 36495
Tssr36496 4 11761010 to 11761013 3 + TSS region transcription start site region 36496
Tssr36497 4 11765268 to 11765285 17 + TSS region transcription start site region 36497
Tssr36498 4 11810283 to 11810305 22 + TSS region transcription start site region 36498
Cpgi14040 4 11914593 to 11914853 260 CpG island CpG island 14040
Gm22477 4 11928424 to 11928739 315 + unclassified non-coding RNA gene predicted gene, 22477
Gm25002 4 11948887 to 11948950 63 + miRNA gene predicted gene, 25002
Pdp1 4 11958183 to 11966450 8267 - protein coding gene pyruvate dehyrogenase phosphatase catalytic subunit 1
Tssr40941 4 11958944 to 11958946 2 - TSS region transcription start site region 40941
Cpgi14041 4 11965552 to 11966994 1442 CpG island CpG island 14041
Tssr40942 4 11965671 to 11965678 7 - TSS region transcription start site region 40942
Tssr40943 4 11965699 to 11965752 53 - TSS region transcription start site region 40943
Tssr36499 4 11965895 to 11965909 14 + TSS region transcription start site region 36499
Tssr40944 4 11966324 to 11966335 11 - TSS region transcription start site region 40944
Tssr40945 4 11966368 to 11966461 93 - TSS region transcription start site region 40945
1700123M08Rik 4 11966565 to 11994280 27715 + lncRNA gene RIKEN cDNA 1700123M08 gene
Tssr36500 4 11966627 to 11966674 47 + TSS region transcription start site region 36500
Gm10604 4 11979560 to 11981265 1705 - protein coding gene predicted gene 10604
Gm26895 4 11980669 to 11988471 7802 + lincRNA gene predicted gene, 26895
Gm11840 4 11999474 to 12009043 9569 - lincRNA gene predicted gene 11840
Gm42255 4 12002494 to 12005785 3291 + lncRNA gene predicted gene, 42255
4932430A15Rik 4 12013613 to 12018083 4470 unclassified gene RIKEN cDNA 4932430A15 gene
Gm46844 4 12013960 to 12016161 2201 + lncRNA gene predicted gene, 46844
Gm11842 4 12027505 to 12040894 13389 + antisense lncRNA gene predicted gene 11842
Tmem67 4 12039355 to 12090020 50665 - protein coding gene transmembrane protein 67
Cpgi14042 4 12087708 to 12088013 305 CpG island CpG island 14042
Tssr40946 4 12087848 to 12087859 11 - TSS region transcription start site region 40946
Tssr40947 4 12087912 to 12088011 99 - TSS region transcription start site region 40947
Cpgi14043 4 12089176 to 12089538 362 CpG island CpG island 14043
Tssr36501 4 12089373 to 12089395 22 + TSS region transcription start site region 36501
Rbm12b2 4 12089439 to 12096243 6804 + protein coding gene RNA binding motif protein 12 B2
Tssr36502 4 12095666 to 12095670 4 + TSS region transcription start site region 36502
Tssr36503 4 12113356 to 12113365 9 + TSS region transcription start site region 36503
Tssr36504 4 12113458 to 12113464 6 + TSS region transcription start site region 36504
Gm11839 4 12114284 to 12116236 1952 + pseudogene predicted gene 11839
Tssr36505 4 12124397 to 12124404 7 + TSS region transcription start site region 36505
Gm11841 4 12125290 to 12127252 1962 + pseudogene predicted gene 11841
Gm11843 4 12131551 to 12131975 424 - pseudogene predicted gene 11843
Cpgi14044 4 12140182 to 12140422 240 CpG island CpG island 14044
Tssr36506 4 12140263 to 12140272 9 + TSS region transcription start site region 36506
Rbm12b1 4 12140264 to 12146731 6467 + protein coding gene RNA binding motif protein 12 B1
Tssr40948 4 12147772 to 12147786 14 - TSS region transcription start site region 40948
Fam92a 4 12153409 to 12172015 18606 - protein coding gene family with sequence similarity 92, member A
Gm46845 4 12155733 to 12159422 3689 + lncRNA gene predicted gene, 46845
Cpgi14045 4 12171304 to 12172140 836 CpG island CpG island 14045
Tssr40949 4 12171759 to 12171770 11 - TSS region transcription start site region 40949
Tssr40950 4 12171781 to 12171796 15 - TSS region transcription start site region 40950
Tssr40951 4 12171813 to 12171851 38 - TSS region transcription start site region 40951
Tssr40952 4 12171970 to 12172024 54 - TSS region transcription start site region 40952
Gm46846 4 12176904 to 12186270 9366 + lncRNA gene predicted gene, 46846
D4Mit19 4 12187711 to 12187913 202 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 19
Gm11847 4 12232833 to 12233951 1118 + pseudogene predicted gene 11847
Gm11846 4 12271399 to 12314583 43184 + lincRNA gene predicted gene 11846
Tssr36507 4 12561104 to 12561107 3 + TSS region transcription start site region 36507
Tssr40953 4 12562819 to 12562821 2 - TSS region transcription start site region 40953
D4Mit99 4 12569824 to 12569966 142 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 99
Gm37985 4 12597388 to 12671843 74455 + unclassified gene predicted gene, 37985