Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:110107661-111954324

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opfaq9 4 110118593 to 110118593 0 QTL open field activity QTL 9
Cpgi14586 4 110152519 to 110152785 266 CpG island CpG island 14586
Tssr38368 4 110152653 to 110152674 21 + TSS region transcription start site region 38368
Gm33070 4 110152666 to 110156713 4047 + lncRNA gene predicted gene, 33070
Elavl4 4 110203737 to 110351911 148174 - protein coding gene ELAV like RNA binding protein 4
Tssr42785 4 110234380 to 110234387 7 - TSS region transcription start site region 42785
Tssr42786 4 110286519 to 110286530 11 - TSS region transcription start site region 42786
Tssr42787 4 110286581 to 110286617 36 - TSS region transcription start site region 42787
Tssr42788 4 110286619 to 110286641 22 - TSS region transcription start site region 42788
Tssr42789 4 110286854 to 110286886 32 - TSS region transcription start site region 42789
Tssr42790 4 110287479 to 110287534 55 - TSS region transcription start site region 42790
Tssr42791 4 110290884 to 110290913 29 - TSS region transcription start site region 42791
Tssr42792 4 110290917 to 110290932 15 - TSS region transcription start site region 42792
Tssr42793 4 110292501 to 110292504 3 - TSS region transcription start site region 42793
Tssr42794 4 110292719 to 110292732 13 - TSS region transcription start site region 42794
Cpgi14587 4 110351178 to 110352244 1066 CpG island CpG island 14587
Tssr38369 4 110351480 to 110351487 7 + TSS region transcription start site region 38369
Tssr42795 4 110351890 to 110351905 15 - TSS region transcription start site region 42795
Tssr42796 4 110351910 to 110351945 35 - TSS region transcription start site region 42796
Tssr42797 4 110356031 to 110356037 6 - TSS region transcription start site region 42797
Cpgi14588 4 110397552 to 110398003 451 CpG island CpG island 14588
Agbl4 4 110397661 to 111664324 1266663 + protein coding gene ATP/GTP binding protein-like 4
Tssr38370 4 110397688 to 110397708 20 + TSS region transcription start site region 38370
Tssr38371 4 110397710 to 110397763 53 + TSS region transcription start site region 38371
Tssr38372 4 110397764 to 110397808 44 + TSS region transcription start site region 38372
Tssr38373 4 110409562 to 110409566 4 + TSS region transcription start site region 38373
C030007D22Rik 4 110434801 to 110435990 1189 unclassified gene RIKEN cDNA C030007D22 gene
Gm12806 4 110510035 to 110510302 267 + pseudogene predicted gene 12806
Gm12807 4 110512771 to 110513732 961 - pseudogene predicted gene 12807
Tssr38374 4 110583927 to 110583931 4 + TSS region transcription start site region 38374
Tssr38375 4 110589414 to 110589417 3 + TSS region transcription start site region 38375
Tssr38376 4 110652620 to 110652626 6 + TSS region transcription start site region 38376
Tssr1261 4 110687374 to 110687378 4 + TSS region transcription start site region 1261
Tssr38377 4 110817846 to 110817850 4 + TSS region transcription start site region 38377
Bmiq6 4 111000000 to 126000000 15000000 QTL body mass index QTL 6
D4Mit120 4 111018252 to 111018399 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 120
Tssr38378 4 111252532 to 111252533 1 + TSS region transcription start site region 38378
Gm12804 4 111290124 to 111291113 989 + pseudogene predicted gene 12804
Tssr38379 4 111290162 to 111290182 20 + TSS region transcription start site region 38379
Gm12805 4 111319558 to 111320605 1047 - pseudogene predicted gene 12805
Tssr38380 4 111411093 to 111411103 10 + TSS region transcription start site region 38380
Cpgi14589 4 111414748 to 111415523 775 CpG island CpG island 14589
Tssr38381 4 111414959 to 111415036 77 + TSS region transcription start site region 38381
Bend5 4 111415006 to 111460298 45292 + protein coding gene BEN domain containing 5
Tssr38382 4 111415136 to 111415218 82 + TSS region transcription start site region 38382
Tssr38383 4 111415238 to 111415259 21 + TSS region transcription start site region 38383
n-R5s191 4 111427818 to 111427933 115 - rRNA gene nuclear encoded rRNA 5S 191
Tssr42798 4 111477496 to 111477501 5 - TSS region transcription start site region 42798
Tssr1262 4 111515607 to 111515609 2 + TSS region transcription start site region 1262
Gm33192 4 111695614 to 111723986 28372 - lncRNA gene predicted gene, 33192
Cpgi14590 4 111719844 to 111720410 566 CpG island CpG island 14590
Spata6 4 111719949 to 111829137 109188 + protein coding gene spermatogenesis associated 6
Tssr38384 4 111719975 to 111720047 72 + TSS region transcription start site region 38384
Tssr38385 4 111720053 to 111720073 20 + TSS region transcription start site region 38385
Tssr38386 4 111720084 to 111720095 11 + TSS region transcription start site region 38386
Tssr38387 4 111720173 to 111720182 9 + TSS region transcription start site region 38387
Tssr38388 4 111720187 to 111720201 14 + TSS region transcription start site region 38388
Tssr38389 4 111750618 to 111750632 14 + TSS region transcription start site region 38389
Tssr38390 4 111750653 to 111750664 11 + TSS region transcription start site region 38390
Tssr38391 4 111777553 to 111777562 9 + TSS region transcription start site region 38391
Tssr38392 4 111777575 to 111777617 42 + TSS region transcription start site region 38392
Gm12961 4 111790624 to 111791673 1049 - pseudogene predicted gene 12961
Gm12960 4 111807358 to 111808423 1065 - pseudogene predicted gene 12960
Tssr38393 4 111827982 to 111827996 14 + TSS region transcription start site region 38393
D4Mit199 4 111875058 to 111875257 199 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 199
Cafq2 4 111875058 to 111875257 199 QTL caffeine metabolism QTL 2
Slc5a9 4 111875374 to 111902796 27422 - protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 9
Tssr42799 4 111880598 to 111880614 16 - TSS region transcription start site region 42799
Tssr42800 4 111880643 to 111880677 34 - TSS region transcription start site region 42800
Tssr42801 4 111898695 to 111898725 30 - TSS region transcription start site region 42801
Tssr42802 4 111902783 to 111902801 18 - TSS region transcription start site region 42802
Skint8 4 111919555 to 111950361 30806 + protein coding gene selection and upkeep of intraepithelial T cells 8