Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:109612661-112449324

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147 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12811 4 109569214 to 109656791 87577 + unclassified non-coding RNA gene predicted gene 12811
Gm12803 4 109630034 to 109630857 823 + pseudogene predicted gene 12803
Gm40227 4 109630879 to 109649103 18224 - lncRNA gene predicted gene, 40227
9630013D21Rik 4 109652427 to 109657507 5080 - unclassified non-coding RNA gene RIKEN cDNA 9630013D21 gene
Tssr42773 4 109656526 to 109656540 14 - TSS region transcription start site region 42773
Cpgi14575 4 109657028 to 109657833 805 CpG island CpG island 14575
Tssr42774 4 109657819 to 109657846 27 - TSS region transcription start site region 42774
Cdkn2c 4 109660876 to 109666756 5880 - protein coding gene cyclin dependent kinase inhibitor 2C
Tssr42775 4 109661260 to 109661275 15 - TSS region transcription start site region 42775
Tssr42776 4 109665249 to 109665278 29 - TSS region transcription start site region 42776
Tssr1259 4 109665281 to 109665296 15 - TSS region transcription start site region 1259
Tssr42777 4 109665307 to 109665320 13 - TSS region transcription start site region 42777
Cpgi14576 4 109665558 to 109667340 1782 CpG island CpG island 14576
Tssr42778 4 109665680 to 109665711 31 - TSS region transcription start site region 42778
Tssr42779 4 109666610 to 109666653 43 - TSS region transcription start site region 42779
Tssr42780 4 109666728 to 109666765 37 - TSS region transcription start site region 42780
Tssr42781 4 109666770 to 109666790 20 - TSS region transcription start site region 42781
Tssr42782 4 109666816 to 109666846 30 - TSS region transcription start site region 42782
Tssr38355 4 109666844 to 109666877 33 + TSS region transcription start site region 38355
Tssr42783 4 109674248 to 109674254 6 - TSS region transcription start site region 42783
Cpgi14577 4 109676168 to 109677465 1297 CpG island CpG island 14577
Tssr38356 4 109676568 to 109676590 22 + TSS region transcription start site region 38356
Tssr38357 4 109676622 to 109676643 21 + TSS region transcription start site region 38357
Faf1 4 109676627 to 109963960 287333 + protein coding gene Fas-associated factor 1
Tssr38358 4 109676652 to 109676702 50 + TSS region transcription start site region 38358
Tssr38359 4 109676710 to 109676740 30 + TSS region transcription start site region 38359
Tssr1260 4 109676766 to 109676771 5 + TSS region transcription start site region 1260
Tssr38360 4 109676777 to 109676800 23 + TSS region transcription start site region 38360
Tssr38361 4 109731409 to 109731413 4 + TSS region transcription start site region 38361
Tssr38362 4 109753604 to 109753608 4 + TSS region transcription start site region 38362
Gm12808 4 109754414 to 109754817 403 - pseudogene predicted gene 12808
D4Mit146 4 109800935 to 109801059 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 146
Ssen1 4 109800935 to 133427471 23626536 QTL suseptibility to Sendai virus 1
Tssr38363 4 109836368 to 109836394 26 + TSS region transcription start site region 38363
Tssr38364 4 109843801 to 109843816 15 + TSS region transcription start site region 38364
Cpgi14578 4 109974286 to 109975183 897 CpG island CpG island 14578
Dmrta2os 4 109976738 to 109977813 1075 - antisense lncRNA gene doublesex and mab-3 related transcription factor like family A2, opposite strand
Cpgi14579 4 109976923 to 109978975 2052 CpG island CpG island 14579
Tssr42784 4 109977851 to 109977899 48 - TSS region transcription start site region 42784
Tssr38365 4 109977972 to 109977995 23 + TSS region transcription start site region 38365
Tssr38366 4 109978004 to 109978048 44 + TSS region transcription start site region 38366
Dmrta2 4 109978053 to 109983687 5634 + protein coding gene doublesex and mab-3 related transcription factor like family A2
Tssr38367 4 109978837 to 109978859 22 + TSS region transcription start site region 38367
Cpgi14580 4 109979651 to 109980880 1229 CpG island CpG island 14580
Cpgi14581 4 109981262 to 109983046 1784 CpG island CpG island 14581
Cpgi14582 4 109983497 to 109984370 873 CpG island CpG island 14582
Cpgi14583 4 109984887 to 109985287 400 CpG island CpG island 14583
Cpgi14584 4 110022276 to 110022622 346 CpG island CpG island 14584
Cpgi14585 4 110050793 to 110051444 651 CpG island CpG island 14585
Opfaq9 4 110118593 to 110118593 0 QTL open field activity QTL 9
Cpgi14586 4 110152519 to 110152785 266 CpG island CpG island 14586
Tssr38368 4 110152653 to 110152674 21 + TSS region transcription start site region 38368
Gm33070 4 110152666 to 110156713 4047 + lncRNA gene predicted gene, 33070
Elavl4 4 110203737 to 110351911 148174 - protein coding gene ELAV like RNA binding protein 4
Tssr42785 4 110234380 to 110234387 7 - TSS region transcription start site region 42785
Tssr42786 4 110286519 to 110286530 11 - TSS region transcription start site region 42786
Tssr42787 4 110286581 to 110286617 36 - TSS region transcription start site region 42787
Tssr42788 4 110286619 to 110286641 22 - TSS region transcription start site region 42788
Tssr42789 4 110286854 to 110286886 32 - TSS region transcription start site region 42789
Tssr42790 4 110287479 to 110287534 55 - TSS region transcription start site region 42790
Tssr42791 4 110290884 to 110290913 29 - TSS region transcription start site region 42791
Tssr42792 4 110290917 to 110290932 15 - TSS region transcription start site region 42792
Tssr42793 4 110292501 to 110292504 3 - TSS region transcription start site region 42793
Tssr42794 4 110292719 to 110292732 13 - TSS region transcription start site region 42794
Cpgi14587 4 110351178 to 110352244 1066 CpG island CpG island 14587
Tssr38369 4 110351480 to 110351487 7 + TSS region transcription start site region 38369
Tssr42795 4 110351890 to 110351905 15 - TSS region transcription start site region 42795
Tssr42796 4 110351910 to 110351945 35 - TSS region transcription start site region 42796
Tssr42797 4 110356031 to 110356037 6 - TSS region transcription start site region 42797
Cpgi14588 4 110397552 to 110398003 451 CpG island CpG island 14588
Agbl4 4 110397661 to 111664324 1266663 + protein coding gene ATP/GTP binding protein-like 4
Tssr38370 4 110397688 to 110397708 20 + TSS region transcription start site region 38370
Tssr38371 4 110397710 to 110397763 53 + TSS region transcription start site region 38371
Tssr38372 4 110397764 to 110397808 44 + TSS region transcription start site region 38372
Tssr38373 4 110409562 to 110409566 4 + TSS region transcription start site region 38373
C030007D22Rik 4 110434801 to 110435990 1189 unclassified gene RIKEN cDNA C030007D22 gene
Gm12806 4 110510035 to 110510302 267 + pseudogene predicted gene 12806
Gm12807 4 110512771 to 110513732 961 - pseudogene predicted gene 12807
Tssr38374 4 110583927 to 110583931 4 + TSS region transcription start site region 38374
Tssr38375 4 110589414 to 110589417 3 + TSS region transcription start site region 38375
Tssr38376 4 110652620 to 110652626 6 + TSS region transcription start site region 38376
Tssr1261 4 110687374 to 110687378 4 + TSS region transcription start site region 1261
Tssr38377 4 110817846 to 110817850 4 + TSS region transcription start site region 38377
Bmiq6 4 111000000 to 126000000 15000000 QTL body mass index QTL 6
D4Mit120 4 111018252 to 111018399 147 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 120
Tssr38378 4 111252532 to 111252533 1 + TSS region transcription start site region 38378
Gm12804 4 111290124 to 111291113 989 + pseudogene predicted gene 12804
Tssr38379 4 111290162 to 111290182 20 + TSS region transcription start site region 38379
Gm12805 4 111319558 to 111320605 1047 - pseudogene predicted gene 12805
Tssr38380 4 111411093 to 111411103 10 + TSS region transcription start site region 38380
Cpgi14589 4 111414748 to 111415523 775 CpG island CpG island 14589
Tssr38381 4 111414959 to 111415036 77 + TSS region transcription start site region 38381
Bend5 4 111415006 to 111460298 45292 + protein coding gene BEN domain containing 5
Tssr38382 4 111415136 to 111415218 82 + TSS region transcription start site region 38382
Tssr38383 4 111415238 to 111415259 21 + TSS region transcription start site region 38383
n-R5s191 4 111427818 to 111427933 115 - rRNA gene nuclear encoded rRNA 5S 191
Tssr42798 4 111477496 to 111477501 5 - TSS region transcription start site region 42798
Tssr1262 4 111515607 to 111515609 2 + TSS region transcription start site region 1262
Gm33192 4 111695614 to 111723986 28372 - lncRNA gene predicted gene, 33192
Cpgi14590 4 111719844 to 111720410 566 CpG island CpG island 14590
Spata6 4 111719949 to 111829137 109188 + protein coding gene spermatogenesis associated 6
Tssr38384 4 111719975 to 111720047 72 + TSS region transcription start site region 38384
Tssr38385 4 111720053 to 111720073 20 + TSS region transcription start site region 38385
Tssr38386 4 111720084 to 111720095 11 + TSS region transcription start site region 38386
Tssr38387 4 111720173 to 111720182 9 + TSS region transcription start site region 38387
Tssr38388 4 111720187 to 111720201 14 + TSS region transcription start site region 38388
Tssr38389 4 111750618 to 111750632 14 + TSS region transcription start site region 38389
Tssr38390 4 111750653 to 111750664 11 + TSS region transcription start site region 38390
Tssr38391 4 111777553 to 111777562 9 + TSS region transcription start site region 38391
Tssr38392 4 111777575 to 111777617 42 + TSS region transcription start site region 38392
Gm12961 4 111790624 to 111791673 1049 - pseudogene predicted gene 12961
Gm12960 4 111807358 to 111808423 1065 - pseudogene predicted gene 12960
Tssr38393 4 111827982 to 111827996 14 + TSS region transcription start site region 38393
D4Mit199 4 111875058 to 111875257 199 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 199
Cafq2 4 111875058 to 111875257 199 QTL caffeine metabolism QTL 2
Slc5a9 4 111875374 to 111902796 27422 - protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 9
Tssr42799 4 111880598 to 111880614 16 - TSS region transcription start site region 42799
Tssr42800 4 111880643 to 111880677 34 - TSS region transcription start site region 42800
Tssr42801 4 111898695 to 111898725 30 - TSS region transcription start site region 42801
Tssr42802 4 111902783 to 111902801 18 - TSS region transcription start site region 42802
Skint8 4 111919555 to 111950361 30806 + protein coding gene selection and upkeep of intraepithelial T cells 8
Tssr38394 4 111972833 to 111972854 21 + TSS region transcription start site region 38394
Tssr38395 4 111972922 to 111972946 24 + TSS region transcription start site region 38395
Skint7 4 111972923 to 111988223 15300 + protein coding gene selection and upkeep of intraepithelial T cells 7
Tssr38396 4 111973032 to 111973072 40 + TSS region transcription start site region 38396
Gm25844 4 111988650 to 111988958 308 - unclassified non-coding RNA gene predicted gene, 25844
Tssr38397 4 112006189 to 112006199 10 + TSS region transcription start site region 38397
Tssr38398 4 112006245 to 112006273 28 + TSS region transcription start site region 38398
Skint1 4 112006269 to 112029538 23269 + protein coding gene selection and upkeep of intraepithelial T cells 1
Tssr38399 4 112006281 to 112006297 16 + TSS region transcription start site region 38399
Tssr38400 4 112034710 to 112034714 4 + TSS region transcription start site region 38400
Skint4 4 112072016 to 112168076 96060 + protein coding gene selection and upkeep of intraepithelial T cells 4
Tssr38401 4 112072640 to 112072656 16 + TSS region transcription start site region 38401
Tssr38402 4 112072658 to 112072674 16 + TSS region transcription start site region 38402
Tssr38403 4 112072676 to 112072685 9 + TSS region transcription start site region 38403
Gm12820 4 112121003 to 112121344 341 - pseudogene predicted gene 12820
Gm12815 4 112146098 to 112146232 134 - pseudogene predicted gene 12815
Skint3 4 112232245 to 112300468 68223 + protein coding gene selection and upkeep of intraepithelial T cells 3
Tssr38404 4 112232266 to 112232274 8 + TSS region transcription start site region 38404
Tssr1263 4 112232330 to 112232335 5 + TSS region transcription start site region 1263
Tssr38405 4 112232346 to 112232386 40 + TSS region transcription start site region 38405
Tssr1264 4 112232391 to 112232408 17 + TSS region transcription start site region 1264
Tssr38406 4 112284801 to 112284813 12 + TSS region transcription start site region 38406
Tssr38407 4 112288673 to 112288683 10 + TSS region transcription start site region 38407
Skint9 4 112385969 to 112433985 48016 - protein coding gene selection and upkeep of intraepithelial T cells 9
Tssr42803 4 112433979 to 112433993 14 - TSS region transcription start site region 42803
Tssr42804 4 112434005 to 112434014 9 - TSS region transcription start site region 42804