Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:109500793-110601444

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930522H14Rik 4 109505337 to 109531297 25960 - protein coding gene RIKEN cDNA 4930522H14 gene
Tssr42770 4 109531198 to 109531212 14 - TSS region transcription start site region 42770
Tssr42771 4 109531217 to 109531220 3 - TSS region transcription start site region 42771
Tssr42772 4 109531226 to 109531232 6 - TSS region transcription start site region 42772
Gm22497 4 109537039 to 109537169 130 + snoRNA gene predicted gene, 22497
Gm40226 4 109550959 to 109554048 3089 + lncRNA gene predicted gene, 40226
Gm12811 4 109569214 to 109656791 87577 + unclassified non-coding RNA gene predicted gene 12811
Gm19112 4 109599375 to 109600047 672 - pseudogene predicted gene, 19112
Gm12803 4 109630034 to 109630857 823 + pseudogene predicted gene 12803
Gm40227 4 109630879 to 109649103 18224 - lncRNA gene predicted gene, 40227
9630013D21Rik 4 109652427 to 109657507 5080 - unclassified non-coding RNA gene RIKEN cDNA 9630013D21 gene
Tssr42773 4 109656526 to 109656540 14 - TSS region transcription start site region 42773
Cpgi14575 4 109657028 to 109657833 805 CpG island CpG island 14575
Tssr42774 4 109657819 to 109657846 27 - TSS region transcription start site region 42774
Cdkn2c 4 109660876 to 109666756 5880 - protein coding gene cyclin dependent kinase inhibitor 2C
Tssr42775 4 109661260 to 109661275 15 - TSS region transcription start site region 42775
Tssr42776 4 109665249 to 109665278 29 - TSS region transcription start site region 42776
Tssr1259 4 109665281 to 109665296 15 - TSS region transcription start site region 1259
Tssr42777 4 109665307 to 109665320 13 - TSS region transcription start site region 42777
Cpgi14576 4 109665558 to 109667340 1782 CpG island CpG island 14576
Tssr42778 4 109665680 to 109665711 31 - TSS region transcription start site region 42778
Tssr42779 4 109666610 to 109666653 43 - TSS region transcription start site region 42779
Tssr42780 4 109666728 to 109666765 37 - TSS region transcription start site region 42780
Tssr42781 4 109666770 to 109666790 20 - TSS region transcription start site region 42781
Tssr42782 4 109666816 to 109666846 30 - TSS region transcription start site region 42782
Tssr38355 4 109666844 to 109666877 33 + TSS region transcription start site region 38355
Tssr42783 4 109674248 to 109674254 6 - TSS region transcription start site region 42783
Cpgi14577 4 109676168 to 109677465 1297 CpG island CpG island 14577
Tssr38356 4 109676568 to 109676590 22 + TSS region transcription start site region 38356
Tssr38357 4 109676622 to 109676643 21 + TSS region transcription start site region 38357
Faf1 4 109676627 to 109963960 287333 + protein coding gene Fas-associated factor 1
Tssr38358 4 109676652 to 109676702 50 + TSS region transcription start site region 38358
Tssr38359 4 109676710 to 109676740 30 + TSS region transcription start site region 38359
Tssr1260 4 109676766 to 109676771 5 + TSS region transcription start site region 1260
Tssr38360 4 109676777 to 109676800 23 + TSS region transcription start site region 38360
Tssr38361 4 109731409 to 109731413 4 + TSS region transcription start site region 38361
Tssr38362 4 109753604 to 109753608 4 + TSS region transcription start site region 38362
Gm12808 4 109754414 to 109754817 403 - pseudogene predicted gene 12808
D4Mit146 4 109800935 to 109801059 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 146
Ssen1 4 109800935 to 133427471 23626536 QTL suseptibility to Sendai virus 1
Tssr38363 4 109836368 to 109836394 26 + TSS region transcription start site region 38363
Tssr38364 4 109843801 to 109843816 15 + TSS region transcription start site region 38364
Cpgi14578 4 109974286 to 109975183 897 CpG island CpG island 14578
Dmrta2os 4 109976738 to 109977813 1075 - antisense lncRNA gene doublesex and mab-3 related transcription factor like family A2, opposite strand
Cpgi14579 4 109976923 to 109978975 2052 CpG island CpG island 14579
Tssr42784 4 109977851 to 109977899 48 - TSS region transcription start site region 42784
Tssr38365 4 109977972 to 109977995 23 + TSS region transcription start site region 38365
Tssr38366 4 109978004 to 109978048 44 + TSS region transcription start site region 38366
Dmrta2 4 109978053 to 109983687 5634 + protein coding gene doublesex and mab-3 related transcription factor like family A2
Tssr38367 4 109978837 to 109978859 22 + TSS region transcription start site region 38367
Cpgi14580 4 109979651 to 109980880 1229 CpG island CpG island 14580
Cpgi14581 4 109981262 to 109983046 1784 CpG island CpG island 14581
Cpgi14582 4 109983497 to 109984370 873 CpG island CpG island 14582
Cpgi14583 4 109984887 to 109985287 400 CpG island CpG island 14583
Cpgi14584 4 110022276 to 110022622 346 CpG island CpG island 14584
Cpgi14585 4 110050793 to 110051444 651 CpG island CpG island 14585
Opfaq9 4 110118593 to 110118593 0 QTL open field activity QTL 9
Cpgi14586 4 110152519 to 110152785 266 CpG island CpG island 14586
Tssr38368 4 110152653 to 110152674 21 + TSS region transcription start site region 38368
Gm33070 4 110152666 to 110156713 4047 + lncRNA gene predicted gene, 33070
Elavl4 4 110203737 to 110351911 148174 - protein coding gene ELAV like RNA binding protein 4
Tssr42785 4 110234380 to 110234387 7 - TSS region transcription start site region 42785
Tssr42786 4 110286519 to 110286530 11 - TSS region transcription start site region 42786
Tssr42787 4 110286581 to 110286617 36 - TSS region transcription start site region 42787
Tssr42788 4 110286619 to 110286641 22 - TSS region transcription start site region 42788
Tssr42789 4 110286854 to 110286886 32 - TSS region transcription start site region 42789
Tssr42790 4 110287479 to 110287534 55 - TSS region transcription start site region 42790
Tssr42791 4 110290884 to 110290913 29 - TSS region transcription start site region 42791
Tssr42792 4 110290917 to 110290932 15 - TSS region transcription start site region 42792
Tssr42793 4 110292501 to 110292504 3 - TSS region transcription start site region 42793
Tssr42794 4 110292719 to 110292732 13 - TSS region transcription start site region 42794
Cpgi14587 4 110351178 to 110352244 1066 CpG island CpG island 14587
Tssr38369 4 110351480 to 110351487 7 + TSS region transcription start site region 38369
Tssr42795 4 110351890 to 110351905 15 - TSS region transcription start site region 42795
Tssr42796 4 110351910 to 110351945 35 - TSS region transcription start site region 42796
Tssr42797 4 110356031 to 110356037 6 - TSS region transcription start site region 42797
Cpgi14588 4 110397552 to 110398003 451 CpG island CpG island 14588
Agbl4 4 110397661 to 111664324 1266663 + protein coding gene ATP/GTP binding protein-like 4
Tssr38370 4 110397688 to 110397708 20 + TSS region transcription start site region 38370
Tssr38371 4 110397710 to 110397763 53 + TSS region transcription start site region 38371
Tssr38372 4 110397764 to 110397808 44 + TSS region transcription start site region 38372
Tssr38373 4 110409562 to 110409566 4 + TSS region transcription start site region 38373
C030007D22Rik 4 110434801 to 110435990 1189 unclassified gene RIKEN cDNA C030007D22 gene
Gm12806 4 110510035 to 110510302 267 + pseudogene predicted gene 12806
Gm12807 4 110512771 to 110513732 961 - pseudogene predicted gene 12807
Tssr38374 4 110583927 to 110583931 4 + TSS region transcription start site region 38374
Tssr38375 4 110589414 to 110589417 3 + TSS region transcription start site region 38375