Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:109440959-109664048

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttc39a 4 109406623 to 109444745 38122 + protein coding gene tetratricopeptide repeat domain 39A
Tssr42762 4 109441016 to 109441021 5 - TSS region transcription start site region 42762
Rnf11 4 109452857 to 109476505 23648 - protein coding gene ring finger protein 11
Tssr38352 4 109475830 to 109475850 20 + TSS region transcription start site region 38352
Tssr38353 4 109475878 to 109475901 23 + TSS region transcription start site region 38353
Cpgi14574 4 109475902 to 109477018 1116 CpG island CpG island 14574
Tssr42763 4 109476265 to 109476289 24 - TSS region transcription start site region 42763
Tssr42764 4 109476428 to 109476437 9 - TSS region transcription start site region 42764
Tssr42765 4 109476453 to 109476477 24 - TSS region transcription start site region 42765
Tssr42766 4 109476482 to 109476496 14 - TSS region transcription start site region 42766
Tssr42767 4 109476597 to 109476608 11 - TSS region transcription start site region 42767
Tssr42768 4 109476608 to 109476665 57 - TSS region transcription start site region 42768
Tssr42769 4 109476666 to 109476727 61 - TSS region transcription start site region 42769
Tssr38354 4 109484874 to 109484886 12 + TSS region transcription start site region 38354
4930522H14Rik 4 109505337 to 109531297 25960 - protein coding gene RIKEN cDNA 4930522H14 gene
Tssr42770 4 109531198 to 109531212 14 - TSS region transcription start site region 42770
Tssr42771 4 109531217 to 109531220 3 - TSS region transcription start site region 42771
Tssr42772 4 109531226 to 109531232 6 - TSS region transcription start site region 42772
Gm22497 4 109537039 to 109537169 130 + snoRNA gene predicted gene, 22497
Gm40226 4 109550959 to 109554048 3089 + lncRNA gene predicted gene, 40226
Gm12811 4 109569214 to 109656791 87577 + unclassified non-coding RNA gene predicted gene 12811
Gm19112 4 109599375 to 109600047 672 - pseudogene predicted gene, 19112
Gm12803 4 109630034 to 109630857 823 + pseudogene predicted gene 12803
Gm40227 4 109630879 to 109649103 18224 - lncRNA gene predicted gene, 40227
9630013D21Rik 4 109652427 to 109657507 5080 - unclassified non-coding RNA gene RIKEN cDNA 9630013D21 gene
Tssr42773 4 109656526 to 109656540 14 - TSS region transcription start site region 42773
Cpgi14575 4 109657028 to 109657833 805 CpG island CpG island 14575
Tssr42774 4 109657819 to 109657846 27 - TSS region transcription start site region 42774
Cdkn2c 4 109660876 to 109666756 5880 - protein coding gene cyclin dependent kinase inhibitor 2C
Tssr42775 4 109661260 to 109661275 15 - TSS region transcription start site region 42775