Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:109411627-110228960

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttc39a 4 109406623 to 109444745 38122 + protein coding gene tetratricopeptide repeat domain 39A
Tssr38348 4 109415631 to 109415648 17 + TSS region transcription start site region 38348
Tssr38349 4 109415657 to 109415668 11 + TSS region transcription start site region 38349
Tssr38350 4 109415679 to 109415689 10 + TSS region transcription start site region 38350
Tssr38351 4 109440257 to 109440273 16 + TSS region transcription start site region 38351
Tssr42762 4 109441016 to 109441021 5 - TSS region transcription start site region 42762
Rnf11 4 109452857 to 109476505 23648 - protein coding gene ring finger protein 11
Tssr38352 4 109475830 to 109475850 20 + TSS region transcription start site region 38352
Tssr38353 4 109475878 to 109475901 23 + TSS region transcription start site region 38353
Cpgi14574 4 109475902 to 109477018 1116 CpG island CpG island 14574
Tssr42763 4 109476265 to 109476289 24 - TSS region transcription start site region 42763
Tssr42764 4 109476428 to 109476437 9 - TSS region transcription start site region 42764
Tssr42765 4 109476453 to 109476477 24 - TSS region transcription start site region 42765
Tssr42766 4 109476482 to 109476496 14 - TSS region transcription start site region 42766
Tssr42767 4 109476597 to 109476608 11 - TSS region transcription start site region 42767
Tssr42768 4 109476608 to 109476665 57 - TSS region transcription start site region 42768
Tssr42769 4 109476666 to 109476727 61 - TSS region transcription start site region 42769
Tssr38354 4 109484874 to 109484886 12 + TSS region transcription start site region 38354
4930522H14Rik 4 109505337 to 109531297 25960 - protein coding gene RIKEN cDNA 4930522H14 gene
Tssr42770 4 109531198 to 109531212 14 - TSS region transcription start site region 42770
Tssr42771 4 109531217 to 109531220 3 - TSS region transcription start site region 42771
Tssr42772 4 109531226 to 109531232 6 - TSS region transcription start site region 42772
Gm22497 4 109537039 to 109537169 130 + snoRNA gene predicted gene, 22497
Gm40226 4 109550959 to 109554048 3089 + lncRNA gene predicted gene, 40226
Gm12811 4 109569214 to 109656791 87577 + unclassified non-coding RNA gene predicted gene 12811
Gm19112 4 109599375 to 109600047 672 - pseudogene predicted gene, 19112
Gm12803 4 109630034 to 109630857 823 + pseudogene predicted gene 12803
Gm40227 4 109630879 to 109649103 18224 - lncRNA gene predicted gene, 40227
9630013D21Rik 4 109652427 to 109657507 5080 - unclassified non-coding RNA gene RIKEN cDNA 9630013D21 gene
Tssr42773 4 109656526 to 109656540 14 - TSS region transcription start site region 42773
Cpgi14575 4 109657028 to 109657833 805 CpG island CpG island 14575
Tssr42774 4 109657819 to 109657846 27 - TSS region transcription start site region 42774
Cdkn2c 4 109660876 to 109666756 5880 - protein coding gene cyclin dependent kinase inhibitor 2C
Tssr42775 4 109661260 to 109661275 15 - TSS region transcription start site region 42775
Tssr42776 4 109665249 to 109665278 29 - TSS region transcription start site region 42776
Tssr1259 4 109665281 to 109665296 15 - TSS region transcription start site region 1259
Tssr42777 4 109665307 to 109665320 13 - TSS region transcription start site region 42777
Cpgi14576 4 109665558 to 109667340 1782 CpG island CpG island 14576
Tssr42778 4 109665680 to 109665711 31 - TSS region transcription start site region 42778
Tssr42779 4 109666610 to 109666653 43 - TSS region transcription start site region 42779
Tssr42780 4 109666728 to 109666765 37 - TSS region transcription start site region 42780
Tssr42781 4 109666770 to 109666790 20 - TSS region transcription start site region 42781
Tssr42782 4 109666816 to 109666846 30 - TSS region transcription start site region 42782
Tssr38355 4 109666844 to 109666877 33 + TSS region transcription start site region 38355
Tssr42783 4 109674248 to 109674254 6 - TSS region transcription start site region 42783
Cpgi14577 4 109676168 to 109677465 1297 CpG island CpG island 14577
Tssr38356 4 109676568 to 109676590 22 + TSS region transcription start site region 38356
Tssr38357 4 109676622 to 109676643 21 + TSS region transcription start site region 38357
Faf1 4 109676627 to 109963960 287333 + protein coding gene Fas-associated factor 1
Tssr38358 4 109676652 to 109676702 50 + TSS region transcription start site region 38358
Tssr38359 4 109676710 to 109676740 30 + TSS region transcription start site region 38359
Tssr1260 4 109676766 to 109676771 5 + TSS region transcription start site region 1260
Tssr38360 4 109676777 to 109676800 23 + TSS region transcription start site region 38360
Tssr38361 4 109731409 to 109731413 4 + TSS region transcription start site region 38361
Tssr38362 4 109753604 to 109753608 4 + TSS region transcription start site region 38362
Gm12808 4 109754414 to 109754817 403 - pseudogene predicted gene 12808
D4Mit146 4 109800935 to 109801059 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 146
Ssen1 4 109800935 to 133427471 23626536 QTL suseptibility to Sendai virus 1
Tssr38363 4 109836368 to 109836394 26 + TSS region transcription start site region 38363
Tssr38364 4 109843801 to 109843816 15 + TSS region transcription start site region 38364
Cpgi14578 4 109974286 to 109975183 897 CpG island CpG island 14578
Dmrta2os 4 109976738 to 109977813 1075 - antisense lncRNA gene doublesex and mab-3 related transcription factor like family A2, opposite strand
Cpgi14579 4 109976923 to 109978975 2052 CpG island CpG island 14579
Tssr42784 4 109977851 to 109977899 48 - TSS region transcription start site region 42784
Tssr38365 4 109977972 to 109977995 23 + TSS region transcription start site region 38365
Tssr38366 4 109978004 to 109978048 44 + TSS region transcription start site region 38366
Dmrta2 4 109978053 to 109983687 5634 + protein coding gene doublesex and mab-3 related transcription factor like family A2
Tssr38367 4 109978837 to 109978859 22 + TSS region transcription start site region 38367
Cpgi14580 4 109979651 to 109980880 1229 CpG island CpG island 14580
Cpgi14581 4 109981262 to 109983046 1784 CpG island CpG island 14581
Cpgi14582 4 109983497 to 109984370 873 CpG island CpG island 14582
Cpgi14583 4 109984887 to 109985287 400 CpG island CpG island 14583
Cpgi14584 4 110022276 to 110022622 346 CpG island CpG island 14584
Cpgi14585 4 110050793 to 110051444 651 CpG island CpG island 14585
Opfaq9 4 110118593 to 110118593 0 QTL open field activity QTL 9
Cpgi14586 4 110152519 to 110152785 266 CpG island CpG island 14586
Tssr38368 4 110152653 to 110152674 21 + TSS region transcription start site region 38368
Gm33070 4 110152666 to 110156713 4047 + lncRNA gene predicted gene, 33070
Elavl4 4 110203737 to 110351911 148174 - protein coding gene ELAV like RNA binding protein 4