Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:109125440-109590022

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Osbpl9 4 109061145 to 109202272 141127 - protein coding gene oxysterol binding protein-like 9
Tssr42748 4 109131507 to 109131532 25 - TSS region transcription start site region 42748
Tssr42749 4 109133066 to 109133079 13 - TSS region transcription start site region 42749
Tssr42750 4 109138657 to 109138663 6 - TSS region transcription start site region 42750
D4Ertd78e 4 109143192 to 109143437 245 DNA segment DNA segment, Chr 4, ERATO Doi 78, expressed
Tssr42751 4 109156620 to 109156631 11 - TSS region transcription start site region 42751
Tssr1258 4 109156658 to 109156669 11 - TSS region transcription start site region 1258
Tssr42752 4 109156707 to 109156762 55 - TSS region transcription start site region 42752
Tssr42753 4 109156804 to 109156827 23 - TSS region transcription start site region 42753
Tssr42754 4 109156835 to 109156851 16 - TSS region transcription start site region 42754
Tssr42755 4 109156922 to 109156934 12 - TSS region transcription start site region 42755
Gm23743 4 109160924 to 109161197 273 - unclassified non-coding RNA gene predicted gene, 23743
Tssr42756 4 109174255 to 109174276 21 - TSS region transcription start site region 42756
Tssr42757 4 109189055 to 109189062 7 - TSS region transcription start site region 42757
Tssr42758 4 109200713 to 109200728 15 - TSS region transcription start site region 42758
Cpgi14570 4 109201467 to 109202421 954 CpG island CpG island 14570
Gm46867 4 109202193 to 109208499 6306 + lncRNA gene predicted gene, 46867
Tssr42759 4 109202225 to 109202246 21 - TSS region transcription start site region 42759
D4Mit1001 4 109207651 to 109207769 118 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1001
Gm40225 4 109224090 to 109280108 56018 - lncRNA gene predicted gene, 40225
Calr4 4 109234485 to 109254571 20086 + protein coding gene calreticulin 4
Cpgi14571 4 109279937 to 109281346 1409 CpG island CpG island 14571
Tssr38334 4 109280266 to 109280315 49 + TSS region transcription start site region 38334
Eps15 4 109280268 to 109387817 107549 + protein coding gene epidermal growth factor receptor pathway substrate 15
Tssr38335 4 109280316 to 109280326 10 + TSS region transcription start site region 38335
Tssr38336 4 109280365 to 109280400 35 + TSS region transcription start site region 38336
Tssr38337 4 109316843 to 109316852 9 + TSS region transcription start site region 38337
Tssr38338 4 109343029 to 109343081 52 + TSS region transcription start site region 38338
Tssr38339 4 109343091 to 109343100 9 + TSS region transcription start site region 38339
Gm40224 4 109355440 to 109360022 4582 - lncRNA gene predicted gene, 40224
Tssr38340 4 109372332 to 109372337 5 + TSS region transcription start site region 38340
Gm12749 4 109373701 to 109374859 1158 - pseudogene predicted gene 12749
Tssr42760 4 109374940 to 109374941 1 - TSS region transcription start site region 42760
Tssr38341 4 109385898 to 109385910 12 + TSS region transcription start site region 38341
Tssr38342 4 109385998 to 109386011 13 + TSS region transcription start site region 38342
Cpgi14572 4 109394147 to 109394509 362 CpG island CpG island 14572
Tssr38343 4 109394162 to 109394177 15 + TSS region transcription start site region 38343
Tssr38344 4 109394205 to 109394246 41 + TSS region transcription start site region 38344
Ttc39aos1 4 109403794 to 109406155 2361 - antisense lncRNA gene Ttc39a opposite strand RNA 1
Tssr42761 4 109406245 to 109406262 17 - TSS region transcription start site region 42761
Cpgi14573 4 109406535 to 109407902 1367 CpG island CpG island 14573
Ttc39a 4 109406623 to 109444745 38122 + protein coding gene tetratricopeptide repeat domain 39A
Tssr38345 4 109406747 to 109406763 16 + TSS region transcription start site region 38345
Tssr38346 4 109407094 to 109407119 25 + TSS region transcription start site region 38346
Tssr38347 4 109407121 to 109407165 44 + TSS region transcription start site region 38347
Tssr38348 4 109415631 to 109415648 17 + TSS region transcription start site region 38348
Tssr38349 4 109415657 to 109415668 11 + TSS region transcription start site region 38349
Tssr38350 4 109415679 to 109415689 10 + TSS region transcription start site region 38350
Tssr38351 4 109440257 to 109440273 16 + TSS region transcription start site region 38351
Tssr42762 4 109441016 to 109441021 5 - TSS region transcription start site region 42762
Rnf11 4 109452857 to 109476505 23648 - protein coding gene ring finger protein 11
Tssr38352 4 109475830 to 109475850 20 + TSS region transcription start site region 38352
Tssr38353 4 109475878 to 109475901 23 + TSS region transcription start site region 38353
Cpgi14574 4 109475902 to 109477018 1116 CpG island CpG island 14574
Tssr42763 4 109476265 to 109476289 24 - TSS region transcription start site region 42763
Tssr42764 4 109476428 to 109476437 9 - TSS region transcription start site region 42764
Tssr42765 4 109476453 to 109476477 24 - TSS region transcription start site region 42765
Tssr42766 4 109476482 to 109476496 14 - TSS region transcription start site region 42766
Tssr42767 4 109476597 to 109476608 11 - TSS region transcription start site region 42767
Tssr42768 4 109476608 to 109476665 57 - TSS region transcription start site region 42768
Tssr42769 4 109476666 to 109476727 61 - TSS region transcription start site region 42769
Tssr38354 4 109484874 to 109484886 12 + TSS region transcription start site region 38354
4930522H14Rik 4 109505337 to 109531297 25960 - protein coding gene RIKEN cDNA 4930522H14 gene
Tssr42770 4 109531198 to 109531212 14 - TSS region transcription start site region 42770
Tssr42771 4 109531217 to 109531220 3 - TSS region transcription start site region 42771
Tssr42772 4 109531226 to 109531232 6 - TSS region transcription start site region 42772
Gm22497 4 109537039 to 109537169 130 + snoRNA gene predicted gene, 22497
Gm40226 4 109550959 to 109554048 3089 + lncRNA gene predicted gene, 40226
Gm12811 4 109569214 to 109656791 87577 + unclassified non-coding RNA gene predicted gene 12811