Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:10880449-11156700

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2610301B20Rik 4 10874498 to 10899425 24927 + protein coding gene RIKEN cDNA 2610301B20 gene
Tssr36460 4 10932677 to 10932688 11 + TSS region transcription start site region 36460
Tssr36461 4 10946584 to 10946598 14 + TSS region transcription start site region 36461
Rps11-ps3 4 10946608 to 10947093 485 + pseudogene ribosomal protein S11, pseudogene 3
Gm2401 4 10987740 to 10990315 2575 + pseudogene predicted gene 2401
Tssr40910 4 10988251 to 10988252 1 - TSS region transcription start site region 40910
Plekhf2 4 10988662 to 11007619 18957 - protein coding gene pleckstrin homology domain containing, family F (with FYVE domain) member 2
Tssr40911 4 10989115 to 10989120 5 - TSS region transcription start site region 40911
Tssr40912 4 10998648 to 10998652 4 - TSS region transcription start site region 40912
Cpgi14028 4 11006946 to 11008247 1301 CpG island CpG island 14028
Tssr40913 4 11007522 to 11007533 11 - TSS region transcription start site region 40913
Tssr40914 4 11007541 to 11007634 93 - TSS region transcription start site region 40914
Tssr40915 4 11007635 to 11007655 20 - TSS region transcription start site region 40915
Gm46843 4 11010449 to 11026700 16251 - lncRNA gene predicted gene, 46843
Gm35429 4 11031796 to 11049868 18072 - lncRNA gene predicted gene, 35429
Ndufaf6 4 11051045 to 11076205 25160 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 6
Cpgi14029 4 11075747 to 11076484 737 CpG island CpG island 14029
Tssr40916 4 11076160 to 11076211 51 - TSS region transcription start site region 40916
Tssr1120 4 11105395 to 11105397 2 + TSS region transcription start site region 1120
Gm11827 4 11123350 to 11126998 3648 + lincRNA gene predicted gene 11827
Tssr36462 4 11123950 to 11123980 30 + TSS region transcription start site region 36462
Gm11829 4 11133327 to 11133608 281 + pseudogene predicted gene 11829
Mir684-2 4 11134097 to 11134182 85 + miRNA gene microRNA 684-2
Gm11830 4 11144710 to 11145270 560 + pseudogene predicted gene 11830
Tssr40917 4 11147717 to 11147730 13 - TSS region transcription start site region 40917
Tssr36463 4 11155184 to 11155202 18 + TSS region transcription start site region 36463
Cpgi14030 4 11155994 to 11156966 972 CpG island CpG island 14030
Tssr40918 4 11156209 to 11156224 15 - TSS region transcription start site region 40918
Tssr40919 4 11156242 to 11156258 16 - TSS region transcription start site region 40919
Tssr36464 4 11156411 to 11156453 42 + TSS region transcription start site region 36464
Trp53inp1 4 11156441 to 11174377 17936 + protein coding gene transformation related protein 53 inducible nuclear protein 1
Tssr36465 4 11156468 to 11156483 15 + TSS region transcription start site region 36465