Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:108517798-109718393

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tut4 4 108459426 to 108559421 99995 + protein coding gene terminal uridylyl transferase 4
Gm25827 4 108521924 to 108522030 106 - snRNA gene predicted gene, 25827
Gm22345 4 108537491 to 108537597 106 - snRNA gene predicted gene, 22345
Tssr42727 4 108552415 to 108552416 1 - TSS region transcription start site region 42727
Prpf38a 4 108564867 to 108579336 14469 - protein coding gene PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Cpgi14561 4 108578805 to 108579875 1070 CpG island CpG island 14561
Tssr42728 4 108579096 to 108579107 11 - TSS region transcription start site region 42728
Tssr42729 4 108579109 to 108579151 42 - TSS region transcription start site region 42729
Tssr42730 4 108579174 to 108579188 14 - TSS region transcription start site region 42730
Tssr42731 4 108579248 to 108579308 60 - TSS region transcription start site region 42731
Tssr42732 4 108579321 to 108579329 8 - TSS region transcription start site region 42732
Tssr42733 4 108579330 to 108579352 22 - TSS region transcription start site region 42733
Tssr38304 4 108579418 to 108579427 9 + TSS region transcription start site region 38304
Orc1 4 108579423 to 108614833 35410 + protein coding gene origin recognition complex, subunit 1
Tssr38305 4 108579445 to 108579470 25 + TSS region transcription start site region 38305
Tssr38306 4 108579481 to 108579489 8 + TSS region transcription start site region 38306
Gm12743 4 108592425 to 108619849 27424 - unclassified non-coding RNA gene predicted gene 12743
Cpgi14562 4 108619341 to 108620673 1332 CpG island CpG island 14562
Tssr38307 4 108619925 to 108619994 69 + TSS region transcription start site region 38307
Cc2d1b 4 108619940 to 108634123 14183 + protein coding gene coiled-coil and C2 domain containing 1B
Tssr38308 4 108620009 to 108620027 18 + TSS region transcription start site region 38308
Gm20731 4 108622929 to 108625216 2287 - protein coding gene predicted gene, 20731
Tssr38309 4 108633085 to 108633094 9 + TSS region transcription start site region 38309
Tssr38310 4 108633096 to 108633103 7 + TSS region transcription start site region 38310
Tssr38311 4 108633120 to 108633131 11 + TSS region transcription start site region 38311
Gm17354 4 108633843 to 108637441 3598 - lincRNA gene predicted gene, 17354
Zfyve9 4 108637466 to 108780798 143332 - protein coding gene zinc finger, FYVE domain containing 9
Tssr42734 4 108638623 to 108638636 13 - TSS region transcription start site region 42734
Tssr38312 4 108643141 to 108643150 9 + TSS region transcription start site region 38312
3110021N24Rik 4 108719649 to 108781904 62255 + protein coding gene RIKEN cDNA 3110021N24 gene
Gm12741 4 108731742 to 108732297 555 + pseudogene predicted gene 12741
Cpgi14563 4 108779835 to 108781152 1317 CpG island CpG island 14563
Tssr42735 4 108780640 to 108780760 120 - TSS region transcription start site region 42735
Tssr42736 4 108780782 to 108780803 21 - TSS region transcription start site region 42736
Tssr42737 4 108780811 to 108780848 37 - TSS region transcription start site region 42737
Btf3l4 4 108814295 to 108833614 19319 - protein coding gene basic transcription factor 3-like 4
Cpgi14564 4 108832899 to 108834139 1240 CpG island CpG island 14564
Tssr42738 4 108833544 to 108833597 53 - TSS region transcription start site region 42738
Tssr42739 4 108833608 to 108833626 18 - TSS region transcription start site region 42739
Tssr42740 4 108834239 to 108834254 15 - TSS region transcription start site region 42740
Tssr38313 4 108834610 to 108834617 7 + TSS region transcription start site region 38313
Tssr38314 4 108834647 to 108834705 58 + TSS region transcription start site region 38314
Cpgi14565 4 108834662 to 108835140 478 CpG island CpG island 14565
Txndc12 4 108834678 to 108862120 27442 + protein coding gene thioredoxin domain containing 12 (endoplasmic reticulum)
Tssr38315 4 108834709 to 108834751 42 + TSS region transcription start site region 38315
Tssr38316 4 108834802 to 108834807 5 + TSS region transcription start site region 38316
A730015C16Rik 4 108847399 to 108848619 1220 - unclassified gene RIKEN cDNA A730015C16 gene
Cpgi14566 4 108847744 to 108848903 1159 CpG island CpG island 14566
Tssr38317 4 108847827 to 108847895 68 + TSS region transcription start site region 38317
Kti12 4 108847857 to 108849412 1555 + protein coding gene KTI12 homolog, chromatin associated
Tssr38318 4 108847897 to 108847925 28 + TSS region transcription start site region 38318
Tssr42741 4 108848356 to 108848405 49 - TSS region transcription start site region 42741
C030043A13Rik 4 108850865 to 108852018 1153 unclassified gene RIKEN cDNA C030043A13 gene
Tssr38319 4 108861599 to 108861629 30 + TSS region transcription start site region 38319
Tssr38320 4 108861688 to 108861709 21 + TSS region transcription start site region 38320
Cpgi14567 4 108878997 to 108879712 715 CpG island CpG island 14567
Tssr38321 4 108879068 to 108879085 17 + TSS region transcription start site region 38321
Rab3b 4 108879070 to 108943324 64254 + protein coding gene RAB3B, member RAS oncogene family
Tssr38322 4 108879092 to 108879116 24 + TSS region transcription start site region 38322
Tssr38323 4 108879130 to 108879141 11 + TSS region transcription start site region 38323
Tssr38324 4 108879154 to 108879161 7 + TSS region transcription start site region 38324
Gm12736 4 108933573 to 108933808 235 - pseudogene predicted gene 12736
Tssr38325 4 108942350 to 108942354 4 + TSS region transcription start site region 38325
8030443G20Rik 4 108942843 to 108972077 29234 - antisense lncRNA gene RIKEN cDNA 8030443G20 gene
Gm23589 4 108998602 to 108998706 104 - snRNA gene predicted gene, 23589
Cpgi14568 4 109000298 to 109001266 968 CpG island CpG island 14568
Tssr38326 4 109000606 to 109000706 100 + TSS region transcription start site region 38326
Nrd1 4 109000655 to 109061777 61122 + protein coding gene nardilysin, N-arginine dibasic convertase, NRD convertase 1
Tssr38327 4 109000809 to 109000864 55 + TSS region transcription start site region 38327
Tssr38328 4 109000898 to 109000909 11 + TSS region transcription start site region 38328
Tssr38329 4 109000914 to 109000925 11 + TSS region transcription start site region 38329
Tssr38330 4 109000990 to 109001001 11 + TSS region transcription start site region 38330
Tssr38331 4 109001054 to 109001065 11 + TSS region transcription start site region 38331
Tssr38332 4 109015515 to 109015523 8 + TSS region transcription start site region 38332
Mir761 4 109017655 to 109017730 75 + miRNA gene microRNA 761
Tssr38333 4 109033856 to 109033872 16 + TSS region transcription start site region 38333
Osbpl9 4 109061145 to 109202272 141127 - protein coding gene oxysterol binding protein-like 9
5330417P21Rik 4 109069807 to 109070173 366 unclassified gene RIKEN cDNA 5330417P21 gene
Tssr42742 4 109071279 to 109071282 3 - TSS region transcription start site region 42742
Gm32581 4 109078493 to 109081224 2731 + lncRNA gene predicted gene, 32581
Tssr42743 4 109102607 to 109102622 15 - TSS region transcription start site region 42743
Tssr42744 4 109102638 to 109102660 22 - TSS region transcription start site region 42744
C030032G21Rik 4 109102970 to 109103525 555 unclassified gene RIKEN cDNA C030032G21 gene
Tssr42745 4 109107996 to 109108006 10 - TSS region transcription start site region 42745
Tssr42746 4 109108007 to 109108030 23 - TSS region transcription start site region 42746
Tssr42747 4 109109754 to 109109772 18 - TSS region transcription start site region 42747
Tssr1256 4 109114553 to 109114559 6 + TSS region transcription start site region 1256
Tssr1257 4 109117765 to 109117779 14 - TSS region transcription start site region 1257
Cpgi14569 4 109117798 to 109118393 595 CpG island CpG island 14569
Tssr42748 4 109131507 to 109131532 25 - TSS region transcription start site region 42748
Tssr42749 4 109133066 to 109133079 13 - TSS region transcription start site region 42749
Tssr42750 4 109138657 to 109138663 6 - TSS region transcription start site region 42750
D4Ertd78e 4 109143192 to 109143437 245 DNA segment DNA segment, Chr 4, ERATO Doi 78, expressed
Tssr42751 4 109156620 to 109156631 11 - TSS region transcription start site region 42751
Tssr1258 4 109156658 to 109156669 11 - TSS region transcription start site region 1258
Tssr42752 4 109156707 to 109156762 55 - TSS region transcription start site region 42752
Tssr42753 4 109156804 to 109156827 23 - TSS region transcription start site region 42753
Tssr42754 4 109156835 to 109156851 16 - TSS region transcription start site region 42754
Tssr42755 4 109156922 to 109156934 12 - TSS region transcription start site region 42755
Gm23743 4 109160924 to 109161197 273 - unclassified non-coding RNA gene predicted gene, 23743
Tssr42756 4 109174255 to 109174276 21 - TSS region transcription start site region 42756
Tssr42757 4 109189055 to 109189062 7 - TSS region transcription start site region 42757
Tssr42758 4 109200713 to 109200728 15 - TSS region transcription start site region 42758
Cpgi14570 4 109201467 to 109202421 954 CpG island CpG island 14570
Gm46867 4 109202193 to 109208499 6306 + lncRNA gene predicted gene, 46867
Tssr42759 4 109202225 to 109202246 21 - TSS region transcription start site region 42759
D4Mit1001 4 109207651 to 109207769 118 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1001
Gm40225 4 109224090 to 109280108 56018 - lncRNA gene predicted gene, 40225
Calr4 4 109234485 to 109254571 20086 + protein coding gene calreticulin 4
Cpgi14571 4 109279937 to 109281346 1409 CpG island CpG island 14571
Tssr38334 4 109280266 to 109280315 49 + TSS region transcription start site region 38334
Eps15 4 109280268 to 109387817 107549 + protein coding gene epidermal growth factor receptor pathway substrate 15
Tssr38335 4 109280316 to 109280326 10 + TSS region transcription start site region 38335
Tssr38336 4 109280365 to 109280400 35 + TSS region transcription start site region 38336
Tssr38337 4 109316843 to 109316852 9 + TSS region transcription start site region 38337
Tssr38338 4 109343029 to 109343081 52 + TSS region transcription start site region 38338
Tssr38339 4 109343091 to 109343100 9 + TSS region transcription start site region 38339
Gm40224 4 109355440 to 109360022 4582 - lncRNA gene predicted gene, 40224
Tssr38340 4 109372332 to 109372337 5 + TSS region transcription start site region 38340
Gm12749 4 109373701 to 109374859 1158 - pseudogene predicted gene 12749
Tssr42760 4 109374940 to 109374941 1 - TSS region transcription start site region 42760
Tssr38341 4 109385898 to 109385910 12 + TSS region transcription start site region 38341
Tssr38342 4 109385998 to 109386011 13 + TSS region transcription start site region 38342
Cpgi14572 4 109394147 to 109394509 362 CpG island CpG island 14572
Tssr38343 4 109394162 to 109394177 15 + TSS region transcription start site region 38343
Tssr38344 4 109394205 to 109394246 41 + TSS region transcription start site region 38344
Ttc39aos1 4 109403794 to 109406155 2361 - antisense lncRNA gene Ttc39a opposite strand RNA 1
Tssr42761 4 109406245 to 109406262 17 - TSS region transcription start site region 42761
Cpgi14573 4 109406535 to 109407902 1367 CpG island CpG island 14573
Ttc39a 4 109406623 to 109444745 38122 + protein coding gene tetratricopeptide repeat domain 39A
Tssr38345 4 109406747 to 109406763 16 + TSS region transcription start site region 38345
Tssr38346 4 109407094 to 109407119 25 + TSS region transcription start site region 38346
Tssr38347 4 109407121 to 109407165 44 + TSS region transcription start site region 38347
Tssr38348 4 109415631 to 109415648 17 + TSS region transcription start site region 38348
Tssr38349 4 109415657 to 109415668 11 + TSS region transcription start site region 38349
Tssr38350 4 109415679 to 109415689 10 + TSS region transcription start site region 38350
Tssr38351 4 109440257 to 109440273 16 + TSS region transcription start site region 38351
Tssr42762 4 109441016 to 109441021 5 - TSS region transcription start site region 42762
Rnf11 4 109452857 to 109476505 23648 - protein coding gene ring finger protein 11
Tssr38352 4 109475830 to 109475850 20 + TSS region transcription start site region 38352
Tssr38353 4 109475878 to 109475901 23 + TSS region transcription start site region 38353
Cpgi14574 4 109475902 to 109477018 1116 CpG island CpG island 14574
Tssr42763 4 109476265 to 109476289 24 - TSS region transcription start site region 42763
Tssr42764 4 109476428 to 109476437 9 - TSS region transcription start site region 42764
Tssr42765 4 109476453 to 109476477 24 - TSS region transcription start site region 42765
Tssr42766 4 109476482 to 109476496 14 - TSS region transcription start site region 42766
Tssr42767 4 109476597 to 109476608 11 - TSS region transcription start site region 42767
Tssr42768 4 109476608 to 109476665 57 - TSS region transcription start site region 42768
Tssr42769 4 109476666 to 109476727 61 - TSS region transcription start site region 42769
Tssr38354 4 109484874 to 109484886 12 + TSS region transcription start site region 38354
4930522H14Rik 4 109505337 to 109531297 25960 - protein coding gene RIKEN cDNA 4930522H14 gene
Tssr42770 4 109531198 to 109531212 14 - TSS region transcription start site region 42770
Tssr42771 4 109531217 to 109531220 3 - TSS region transcription start site region 42771
Tssr42772 4 109531226 to 109531232 6 - TSS region transcription start site region 42772
Gm22497 4 109537039 to 109537169 130 + snoRNA gene predicted gene, 22497
Gm40226 4 109550959 to 109554048 3089 + lncRNA gene predicted gene, 40226
Gm12811 4 109569214 to 109656791 87577 + unclassified non-coding RNA gene predicted gene 12811
Gm19112 4 109599375 to 109600047 672 - pseudogene predicted gene, 19112
Gm12803 4 109630034 to 109630857 823 + pseudogene predicted gene 12803
Gm40227 4 109630879 to 109649103 18224 - lncRNA gene predicted gene, 40227
9630013D21Rik 4 109652427 to 109657507 5080 - unclassified non-coding RNA gene RIKEN cDNA 9630013D21 gene
Tssr42773 4 109656526 to 109656540 14 - TSS region transcription start site region 42773
Cpgi14575 4 109657028 to 109657833 805 CpG island CpG island 14575
Tssr42774 4 109657819 to 109657846 27 - TSS region transcription start site region 42774
Cdkn2c 4 109660876 to 109666756 5880 - protein coding gene cyclin dependent kinase inhibitor 2C
Tssr42775 4 109661260 to 109661275 15 - TSS region transcription start site region 42775
Tssr42776 4 109665249 to 109665278 29 - TSS region transcription start site region 42776
Tssr1259 4 109665281 to 109665296 15 - TSS region transcription start site region 1259
Tssr42777 4 109665307 to 109665320 13 - TSS region transcription start site region 42777
Cpgi14576 4 109665558 to 109667340 1782 CpG island CpG island 14576
Tssr42778 4 109665680 to 109665711 31 - TSS region transcription start site region 42778
Tssr42779 4 109666610 to 109666653 43 - TSS region transcription start site region 42779
Tssr42780 4 109666728 to 109666765 37 - TSS region transcription start site region 42780
Tssr42781 4 109666770 to 109666790 20 - TSS region transcription start site region 42781
Tssr42782 4 109666816 to 109666846 30 - TSS region transcription start site region 42782
Tssr38355 4 109666844 to 109666877 33 + TSS region transcription start site region 38355
Tssr42783 4 109674248 to 109674254 6 - TSS region transcription start site region 42783
Cpgi14577 4 109676168 to 109677465 1297 CpG island CpG island 14577
Tssr38356 4 109676568 to 109676590 22 + TSS region transcription start site region 38356
Tssr38357 4 109676622 to 109676643 21 + TSS region transcription start site region 38357
Faf1 4 109676627 to 109963960 287333 + protein coding gene Fas-associated factor 1
Tssr38358 4 109676652 to 109676702 50 + TSS region transcription start site region 38358
Tssr38359 4 109676710 to 109676740 30 + TSS region transcription start site region 38359
Tssr1260 4 109676766 to 109676771 5 + TSS region transcription start site region 1260
Tssr38360 4 109676777 to 109676800 23 + TSS region transcription start site region 38360