Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:108427466-108990798

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40223 4 108430637 to 108454167 23530 + lncRNA gene predicted gene, 40223
Tssr38291 4 108431375 to 108431382 7 + TSS region transcription start site region 38291
Gm12738 4 108450807 to 108451342 535 - pseudogene predicted gene 12738
Tssr42725 4 108451362 to 108451371 9 - TSS region transcription start site region 42725
Tssr38292 4 108458801 to 108458838 37 + TSS region transcription start site region 38292
Cpgi14560 4 108459095 to 108460908 1813 CpG island CpG island 14560
Tssr38293 4 108459389 to 108459451 62 + TSS region transcription start site region 38293
Tut4 4 108459426 to 108559421 99995 + protein coding gene terminal uridylyl transferase 4
Tssr38294 4 108459781 to 108459795 14 + TSS region transcription start site region 38294
Tssr38295 4 108459921 to 108459928 7 + TSS region transcription start site region 38295
Tssr38296 4 108460000 to 108460030 30 + TSS region transcription start site region 38296
Tssr42726 4 108460702 to 108460713 11 - TSS region transcription start site region 42726
Tssr38297 4 108460819 to 108460842 23 + TSS region transcription start site region 38297
Tssr38298 4 108460921 to 108460932 11 + TSS region transcription start site region 38298
Gm24967 4 108466944 to 108467050 106 - snRNA gene predicted gene, 24967
Tssr38299 4 108467038 to 108467042 4 + TSS region transcription start site region 38299
Tssr38300 4 108473601 to 108473605 4 + TSS region transcription start site region 38300
Tssr38301 4 108478892 to 108478909 17 + TSS region transcription start site region 38301
Tssr38302 4 108478967 to 108478980 13 + TSS region transcription start site region 38302
Tssr38303 4 108479211 to 108479224 13 + TSS region transcription start site region 38303
Gm12739 4 108484171 to 108484552 381 - pseudogene predicted gene 12739
Gm23138 4 108498044 to 108498146 102 + snRNA gene predicted gene, 23138
Gm12737 4 108513781 to 108516817 3036 + sense intronic lncRNA gene predicted gene 12737
Gm25827 4 108521924 to 108522030 106 - snRNA gene predicted gene, 25827
Gm22345 4 108537491 to 108537597 106 - snRNA gene predicted gene, 22345
Tssr42727 4 108552415 to 108552416 1 - TSS region transcription start site region 42727
Prpf38a 4 108564867 to 108579336 14469 - protein coding gene PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Cpgi14561 4 108578805 to 108579875 1070 CpG island CpG island 14561
Tssr42728 4 108579096 to 108579107 11 - TSS region transcription start site region 42728
Tssr42729 4 108579109 to 108579151 42 - TSS region transcription start site region 42729
Tssr42730 4 108579174 to 108579188 14 - TSS region transcription start site region 42730
Tssr42731 4 108579248 to 108579308 60 - TSS region transcription start site region 42731
Tssr42732 4 108579321 to 108579329 8 - TSS region transcription start site region 42732
Tssr42733 4 108579330 to 108579352 22 - TSS region transcription start site region 42733
Tssr38304 4 108579418 to 108579427 9 + TSS region transcription start site region 38304
Orc1 4 108579423 to 108614833 35410 + protein coding gene origin recognition complex, subunit 1
Tssr38305 4 108579445 to 108579470 25 + TSS region transcription start site region 38305
Tssr38306 4 108579481 to 108579489 8 + TSS region transcription start site region 38306
Gm12743 4 108592425 to 108619849 27424 - unclassified non-coding RNA gene predicted gene 12743
Cpgi14562 4 108619341 to 108620673 1332 CpG island CpG island 14562
Tssr38307 4 108619925 to 108619994 69 + TSS region transcription start site region 38307
Cc2d1b 4 108619940 to 108634123 14183 + protein coding gene coiled-coil and C2 domain containing 1B
Tssr38308 4 108620009 to 108620027 18 + TSS region transcription start site region 38308
Gm20731 4 108622929 to 108625216 2287 - protein coding gene predicted gene, 20731
Tssr38309 4 108633085 to 108633094 9 + TSS region transcription start site region 38309
Tssr38310 4 108633096 to 108633103 7 + TSS region transcription start site region 38310
Tssr38311 4 108633120 to 108633131 11 + TSS region transcription start site region 38311
Gm17354 4 108633843 to 108637441 3598 - lincRNA gene predicted gene, 17354
Zfyve9 4 108637466 to 108780798 143332 - protein coding gene zinc finger, FYVE domain containing 9
Tssr42734 4 108638623 to 108638636 13 - TSS region transcription start site region 42734
Tssr38312 4 108643141 to 108643150 9 + TSS region transcription start site region 38312
3110021N24Rik 4 108719649 to 108781904 62255 + protein coding gene RIKEN cDNA 3110021N24 gene
Gm12741 4 108731742 to 108732297 555 + pseudogene predicted gene 12741
Cpgi14563 4 108779835 to 108781152 1317 CpG island CpG island 14563
Tssr42735 4 108780640 to 108780760 120 - TSS region transcription start site region 42735
Tssr42736 4 108780782 to 108780803 21 - TSS region transcription start site region 42736
Tssr42737 4 108780811 to 108780848 37 - TSS region transcription start site region 42737
Btf3l4 4 108814295 to 108833614 19319 - protein coding gene basic transcription factor 3-like 4
Cpgi14564 4 108832899 to 108834139 1240 CpG island CpG island 14564
Tssr42738 4 108833544 to 108833597 53 - TSS region transcription start site region 42738
Tssr42739 4 108833608 to 108833626 18 - TSS region transcription start site region 42739
Tssr42740 4 108834239 to 108834254 15 - TSS region transcription start site region 42740
Tssr38313 4 108834610 to 108834617 7 + TSS region transcription start site region 38313
Tssr38314 4 108834647 to 108834705 58 + TSS region transcription start site region 38314
Cpgi14565 4 108834662 to 108835140 478 CpG island CpG island 14565
Txndc12 4 108834678 to 108862120 27442 + protein coding gene thioredoxin domain containing 12 (endoplasmic reticulum)
Tssr38315 4 108834709 to 108834751 42 + TSS region transcription start site region 38315
Tssr38316 4 108834802 to 108834807 5 + TSS region transcription start site region 38316
A730015C16Rik 4 108847399 to 108848619 1220 - unclassified gene RIKEN cDNA A730015C16 gene
Cpgi14566 4 108847744 to 108848903 1159 CpG island CpG island 14566
Tssr38317 4 108847827 to 108847895 68 + TSS region transcription start site region 38317
Kti12 4 108847857 to 108849412 1555 + protein coding gene KTI12 homolog, chromatin associated
Tssr38318 4 108847897 to 108847925 28 + TSS region transcription start site region 38318
Tssr42741 4 108848356 to 108848405 49 - TSS region transcription start site region 42741
C030043A13Rik 4 108850865 to 108852018 1153 unclassified gene RIKEN cDNA C030043A13 gene
Tssr38319 4 108861599 to 108861629 30 + TSS region transcription start site region 38319
Tssr38320 4 108861688 to 108861709 21 + TSS region transcription start site region 38320
Cpgi14567 4 108878997 to 108879712 715 CpG island CpG island 14567
Tssr38321 4 108879068 to 108879085 17 + TSS region transcription start site region 38321
Rab3b 4 108879070 to 108943324 64254 + protein coding gene RAB3B, member RAS oncogene family
Tssr38322 4 108879092 to 108879116 24 + TSS region transcription start site region 38322
Tssr38323 4 108879130 to 108879141 11 + TSS region transcription start site region 38323
Tssr38324 4 108879154 to 108879161 7 + TSS region transcription start site region 38324
Gm12736 4 108933573 to 108933808 235 - pseudogene predicted gene 12736
Tssr38325 4 108942350 to 108942354 4 + TSS region transcription start site region 38325
8030443G20Rik 4 108942843 to 108972077 29234 - antisense lncRNA gene RIKEN cDNA 8030443G20 gene