Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:108364678-109332120

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144 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shisal2a 4 108367777 to 108383349 15572 - protein coding gene shisa like 2A
Cpgi14558 4 108383040 to 108383914 874 CpG island CpG island 14558
Gm32297 4 108383295 to 108406608 23313 + lncRNA gene predicted gene, 32297
Tssr38290 4 108391449 to 108391461 12 + TSS region transcription start site region 38290
Gpx7 4 108400217 to 108406713 6496 - protein coding gene glutathione peroxidase 7
Cpgi14559 4 108406208 to 108406903 695 CpG island CpG island 14559
Tssr42724 4 108406676 to 108406745 69 - TSS region transcription start site region 42724
Gm40223 4 108430637 to 108454167 23530 + lncRNA gene predicted gene, 40223
Tssr38291 4 108431375 to 108431382 7 + TSS region transcription start site region 38291
Gm12738 4 108450807 to 108451342 535 - pseudogene predicted gene 12738
Tssr42725 4 108451362 to 108451371 9 - TSS region transcription start site region 42725
Tssr38292 4 108458801 to 108458838 37 + TSS region transcription start site region 38292
Cpgi14560 4 108459095 to 108460908 1813 CpG island CpG island 14560
Tssr38293 4 108459389 to 108459451 62 + TSS region transcription start site region 38293
Tut4 4 108459426 to 108559421 99995 + protein coding gene terminal uridylyl transferase 4
Tssr38294 4 108459781 to 108459795 14 + TSS region transcription start site region 38294
Tssr38295 4 108459921 to 108459928 7 + TSS region transcription start site region 38295
Tssr38296 4 108460000 to 108460030 30 + TSS region transcription start site region 38296
Tssr42726 4 108460702 to 108460713 11 - TSS region transcription start site region 42726
Tssr38297 4 108460819 to 108460842 23 + TSS region transcription start site region 38297
Tssr38298 4 108460921 to 108460932 11 + TSS region transcription start site region 38298
Gm24967 4 108466944 to 108467050 106 - snRNA gene predicted gene, 24967
Tssr38299 4 108467038 to 108467042 4 + TSS region transcription start site region 38299
Tssr38300 4 108473601 to 108473605 4 + TSS region transcription start site region 38300
Tssr38301 4 108478892 to 108478909 17 + TSS region transcription start site region 38301
Tssr38302 4 108478967 to 108478980 13 + TSS region transcription start site region 38302
Tssr38303 4 108479211 to 108479224 13 + TSS region transcription start site region 38303
Gm12739 4 108484171 to 108484552 381 - pseudogene predicted gene 12739
Gm23138 4 108498044 to 108498146 102 + snRNA gene predicted gene, 23138
Gm12737 4 108513781 to 108516817 3036 + sense intronic lncRNA gene predicted gene 12737
Gm25827 4 108521924 to 108522030 106 - snRNA gene predicted gene, 25827
Gm22345 4 108537491 to 108537597 106 - snRNA gene predicted gene, 22345
Tssr42727 4 108552415 to 108552416 1 - TSS region transcription start site region 42727
Prpf38a 4 108564867 to 108579336 14469 - protein coding gene PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Cpgi14561 4 108578805 to 108579875 1070 CpG island CpG island 14561
Tssr42728 4 108579096 to 108579107 11 - TSS region transcription start site region 42728
Tssr42729 4 108579109 to 108579151 42 - TSS region transcription start site region 42729
Tssr42730 4 108579174 to 108579188 14 - TSS region transcription start site region 42730
Tssr42731 4 108579248 to 108579308 60 - TSS region transcription start site region 42731
Tssr42732 4 108579321 to 108579329 8 - TSS region transcription start site region 42732
Tssr42733 4 108579330 to 108579352 22 - TSS region transcription start site region 42733
Tssr38304 4 108579418 to 108579427 9 + TSS region transcription start site region 38304
Orc1 4 108579423 to 108614833 35410 + protein coding gene origin recognition complex, subunit 1
Tssr38305 4 108579445 to 108579470 25 + TSS region transcription start site region 38305
Tssr38306 4 108579481 to 108579489 8 + TSS region transcription start site region 38306
Gm12743 4 108592425 to 108619849 27424 - unclassified non-coding RNA gene predicted gene 12743
Cpgi14562 4 108619341 to 108620673 1332 CpG island CpG island 14562
Tssr38307 4 108619925 to 108619994 69 + TSS region transcription start site region 38307
Cc2d1b 4 108619940 to 108634123 14183 + protein coding gene coiled-coil and C2 domain containing 1B
Tssr38308 4 108620009 to 108620027 18 + TSS region transcription start site region 38308
Gm20731 4 108622929 to 108625216 2287 - protein coding gene predicted gene, 20731
Tssr38309 4 108633085 to 108633094 9 + TSS region transcription start site region 38309
Tssr38310 4 108633096 to 108633103 7 + TSS region transcription start site region 38310
Tssr38311 4 108633120 to 108633131 11 + TSS region transcription start site region 38311
Gm17354 4 108633843 to 108637441 3598 - lincRNA gene predicted gene, 17354
Zfyve9 4 108637466 to 108780798 143332 - protein coding gene zinc finger, FYVE domain containing 9
Tssr42734 4 108638623 to 108638636 13 - TSS region transcription start site region 42734
Tssr38312 4 108643141 to 108643150 9 + TSS region transcription start site region 38312
3110021N24Rik 4 108719649 to 108781904 62255 + protein coding gene RIKEN cDNA 3110021N24 gene
Gm12741 4 108731742 to 108732297 555 + pseudogene predicted gene 12741
Cpgi14563 4 108779835 to 108781152 1317 CpG island CpG island 14563
Tssr42735 4 108780640 to 108780760 120 - TSS region transcription start site region 42735
Tssr42736 4 108780782 to 108780803 21 - TSS region transcription start site region 42736
Tssr42737 4 108780811 to 108780848 37 - TSS region transcription start site region 42737
Btf3l4 4 108814295 to 108833614 19319 - protein coding gene basic transcription factor 3-like 4
Cpgi14564 4 108832899 to 108834139 1240 CpG island CpG island 14564
Tssr42738 4 108833544 to 108833597 53 - TSS region transcription start site region 42738
Tssr42739 4 108833608 to 108833626 18 - TSS region transcription start site region 42739
Tssr42740 4 108834239 to 108834254 15 - TSS region transcription start site region 42740
Tssr38313 4 108834610 to 108834617 7 + TSS region transcription start site region 38313
Tssr38314 4 108834647 to 108834705 58 + TSS region transcription start site region 38314
Cpgi14565 4 108834662 to 108835140 478 CpG island CpG island 14565
Txndc12 4 108834678 to 108862120 27442 + protein coding gene thioredoxin domain containing 12 (endoplasmic reticulum)
Tssr38315 4 108834709 to 108834751 42 + TSS region transcription start site region 38315
Tssr38316 4 108834802 to 108834807 5 + TSS region transcription start site region 38316
A730015C16Rik 4 108847399 to 108848619 1220 - unclassified gene RIKEN cDNA A730015C16 gene
Cpgi14566 4 108847744 to 108848903 1159 CpG island CpG island 14566
Tssr38317 4 108847827 to 108847895 68 + TSS region transcription start site region 38317
Kti12 4 108847857 to 108849412 1555 + protein coding gene KTI12 homolog, chromatin associated
Tssr38318 4 108847897 to 108847925 28 + TSS region transcription start site region 38318
Tssr42741 4 108848356 to 108848405 49 - TSS region transcription start site region 42741
C030043A13Rik 4 108850865 to 108852018 1153 unclassified gene RIKEN cDNA C030043A13 gene
Tssr38319 4 108861599 to 108861629 30 + TSS region transcription start site region 38319
Tssr38320 4 108861688 to 108861709 21 + TSS region transcription start site region 38320
Cpgi14567 4 108878997 to 108879712 715 CpG island CpG island 14567
Tssr38321 4 108879068 to 108879085 17 + TSS region transcription start site region 38321
Rab3b 4 108879070 to 108943324 64254 + protein coding gene RAB3B, member RAS oncogene family
Tssr38322 4 108879092 to 108879116 24 + TSS region transcription start site region 38322
Tssr38323 4 108879130 to 108879141 11 + TSS region transcription start site region 38323
Tssr38324 4 108879154 to 108879161 7 + TSS region transcription start site region 38324
Gm12736 4 108933573 to 108933808 235 - pseudogene predicted gene 12736
Tssr38325 4 108942350 to 108942354 4 + TSS region transcription start site region 38325
8030443G20Rik 4 108942843 to 108972077 29234 - antisense lncRNA gene RIKEN cDNA 8030443G20 gene
Gm23589 4 108998602 to 108998706 104 - snRNA gene predicted gene, 23589
Cpgi14568 4 109000298 to 109001266 968 CpG island CpG island 14568
Tssr38326 4 109000606 to 109000706 100 + TSS region transcription start site region 38326
Nrd1 4 109000655 to 109061777 61122 + protein coding gene nardilysin, N-arginine dibasic convertase, NRD convertase 1
Tssr38327 4 109000809 to 109000864 55 + TSS region transcription start site region 38327
Tssr38328 4 109000898 to 109000909 11 + TSS region transcription start site region 38328
Tssr38329 4 109000914 to 109000925 11 + TSS region transcription start site region 38329
Tssr38330 4 109000990 to 109001001 11 + TSS region transcription start site region 38330
Tssr38331 4 109001054 to 109001065 11 + TSS region transcription start site region 38331
Tssr38332 4 109015515 to 109015523 8 + TSS region transcription start site region 38332
Mir761 4 109017655 to 109017730 75 + miRNA gene microRNA 761
Tssr38333 4 109033856 to 109033872 16 + TSS region transcription start site region 38333
Osbpl9 4 109061145 to 109202272 141127 - protein coding gene oxysterol binding protein-like 9
5330417P21Rik 4 109069807 to 109070173 366 unclassified gene RIKEN cDNA 5330417P21 gene
Tssr42742 4 109071279 to 109071282 3 - TSS region transcription start site region 42742
Gm32581 4 109078493 to 109081224 2731 + lncRNA gene predicted gene, 32581
Tssr42743 4 109102607 to 109102622 15 - TSS region transcription start site region 42743
Tssr42744 4 109102638 to 109102660 22 - TSS region transcription start site region 42744
C030032G21Rik 4 109102970 to 109103525 555 unclassified gene RIKEN cDNA C030032G21 gene
Tssr42745 4 109107996 to 109108006 10 - TSS region transcription start site region 42745
Tssr42746 4 109108007 to 109108030 23 - TSS region transcription start site region 42746
Tssr42747 4 109109754 to 109109772 18 - TSS region transcription start site region 42747
Tssr1256 4 109114553 to 109114559 6 + TSS region transcription start site region 1256
Tssr1257 4 109117765 to 109117779 14 - TSS region transcription start site region 1257
Cpgi14569 4 109117798 to 109118393 595 CpG island CpG island 14569
Tssr42748 4 109131507 to 109131532 25 - TSS region transcription start site region 42748
Tssr42749 4 109133066 to 109133079 13 - TSS region transcription start site region 42749
Tssr42750 4 109138657 to 109138663 6 - TSS region transcription start site region 42750
D4Ertd78e 4 109143192 to 109143437 245 DNA segment DNA segment, Chr 4, ERATO Doi 78, expressed
Tssr42751 4 109156620 to 109156631 11 - TSS region transcription start site region 42751
Tssr1258 4 109156658 to 109156669 11 - TSS region transcription start site region 1258
Tssr42752 4 109156707 to 109156762 55 - TSS region transcription start site region 42752
Tssr42753 4 109156804 to 109156827 23 - TSS region transcription start site region 42753
Tssr42754 4 109156835 to 109156851 16 - TSS region transcription start site region 42754
Tssr42755 4 109156922 to 109156934 12 - TSS region transcription start site region 42755
Gm23743 4 109160924 to 109161197 273 - unclassified non-coding RNA gene predicted gene, 23743
Tssr42756 4 109174255 to 109174276 21 - TSS region transcription start site region 42756
Tssr42757 4 109189055 to 109189062 7 - TSS region transcription start site region 42757
Tssr42758 4 109200713 to 109200728 15 - TSS region transcription start site region 42758
Cpgi14570 4 109201467 to 109202421 954 CpG island CpG island 14570
Gm46867 4 109202193 to 109208499 6306 + lncRNA gene predicted gene, 46867
Tssr42759 4 109202225 to 109202246 21 - TSS region transcription start site region 42759
D4Mit1001 4 109207651 to 109207769 118 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 1001
Gm40225 4 109224090 to 109280108 56018 - lncRNA gene predicted gene, 40225
Calr4 4 109234485 to 109254571 20086 + protein coding gene calreticulin 4
Cpgi14571 4 109279937 to 109281346 1409 CpG island CpG island 14571
Tssr38334 4 109280266 to 109280315 49 + TSS region transcription start site region 38334
Eps15 4 109280268 to 109387817 107549 + protein coding gene epidermal growth factor receptor pathway substrate 15
Tssr38335 4 109280316 to 109280326 10 + TSS region transcription start site region 38335
Tssr38336 4 109280365 to 109280400 35 + TSS region transcription start site region 38336
Tssr38337 4 109316843 to 109316852 9 + TSS region transcription start site region 38337