Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:107853528-108383553

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrp8 4 107802261 to 107876840 74579 + protein coding gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
Cpgi14546 4 107879523 to 107880155 632 CpG island CpG island 14546
Tssr38272 4 107879745 to 107879796 51 + TSS region transcription start site region 38272
Magoh 4 107879755 to 107887424 7669 + protein coding gene mago homolog, exon junction complex core component
Tssr38273 4 107879805 to 107879823 18 + TSS region transcription start site region 38273
Tssr38274 4 107879829 to 107879840 11 + TSS region transcription start site region 38274
Tssr38275 4 107883067 to 107883074 7 + TSS region transcription start site region 38275
Cpgi14547 4 107889430 to 107890337 907 CpG island CpG island 14547
Tssr42697 4 107889768 to 107889801 33 - TSS region transcription start site region 42697
Czib 4 107889785 to 107897802 8017 + protein coding gene CXXC motif containing zinc binding protein
Tssr38276 4 107889830 to 107889880 50 + TSS region transcription start site region 38276
Tssr38277 4 107890094 to 107890129 35 + TSS region transcription start site region 38277
Tssr38278 4 107890219 to 107890270 51 + TSS region transcription start site region 38278
Tssr38279 4 107890273 to 107890295 22 + TSS region transcription start site region 38279
Tssr38280 4 107895802 to 107895815 13 + TSS region transcription start site region 38280
Cpt2 4 107903982 to 107923589 19607 - protein coding gene carnitine palmitoyltransferase 2
Cpgi14548 4 107923238 to 107923772 534 CpG island CpG island 14548
Tssr42698 4 107923479 to 107923495 16 - TSS region transcription start site region 42698
Tssr42699 4 107923508 to 107923517 9 - TSS region transcription start site region 42699
Tssr42700 4 107923519 to 107923615 96 - TSS region transcription start site region 42700
Gm40221 4 107937471 to 107947374 9903 + lncRNA gene predicted gene, 40221
Tssr38281 4 107953907 to 107953940 33 + TSS region transcription start site region 38281
4930407G08Rik 4 107953932 to 107960721 6789 + lincRNA gene RIKEN cDNA 4930407G08 gene
Slc1a7 4 107968334 to 108013532 45198 + protein coding gene solute carrier family 1 (glutamate transporter), member 7
Tssr38282 4 107968400 to 107968424 24 + TSS region transcription start site region 38282
Tssr38283 4 107968434 to 107968446 12 + TSS region transcription start site region 38283
Tssr38284 4 107968602 to 107968645 43 + TSS region transcription start site region 38284
Tssr1254 4 107981687 to 107981692 5 + TSS region transcription start site region 1254
Podn 4 108014793 to 108032090 17297 - protein coding gene podocan
Cpgi14549 4 108021184 to 108021620 436 CpG island CpG island 14549
Tssr42701 4 108027307 to 108027343 36 - TSS region transcription start site region 42701
Cpgi14550 4 108030993 to 108032579 1586 CpG island CpG island 14550
Tssr42702 4 108031894 to 108031905 11 - TSS region transcription start site region 42702
Tssr42703 4 108031938 to 108031961 23 - TSS region transcription start site region 42703
Tssr42704 4 108032069 to 108032098 29 - TSS region transcription start site region 42704
Gm23354 4 108041697 to 108041800 103 - snRNA gene predicted gene, 23354
Scp2 4 108043830 to 108144971 101141 - protein coding gene sterol carrier protein 2, liver
Tssr42705 4 108051877 to 108051918 41 - TSS region transcription start site region 42705
Tssr42706 4 108069964 to 108069968 4 - TSS region transcription start site region 42706
Cpgi14551 4 108071304 to 108071624 320 CpG island CpG island 14551
Tssr42707 4 108071327 to 108071408 81 - TSS region transcription start site region 42707
Tssr42708 4 108071643 to 108071652 9 - TSS region transcription start site region 42708
Tssr42709 4 108074461 to 108074476 15 - TSS region transcription start site region 42709
Tssr42710 4 108080767 to 108080809 42 - TSS region transcription start site region 42710
Mir6397 4 108087357 to 108087449 92 + miRNA gene microRNA 6397
Tssr1255 4 108101511 to 108101516 5 + TSS region transcription start site region 1255
Tssr42711 4 108105146 to 108105159 13 - TSS region transcription start site region 42711
Cpgi14552 4 108118195 to 108118758 563 CpG island CpG island 14552
Tssr42712 4 108118470 to 108118498 28 - TSS region transcription start site region 42712
Tssr42713 4 108118505 to 108118521 16 - TSS region transcription start site region 42713
Tssr42714 4 108118528 to 108118553 25 - TSS region transcription start site region 42714
Tssr42715 4 108118733 to 108118779 46 - TSS region transcription start site region 42715
Tssr42716 4 108144952 to 108144984 32 - TSS region transcription start site region 42716
Tssr42717 4 108144986 to 108145020 34 - TSS region transcription start site region 42717
Cpgi14553 4 108165239 to 108165814 575 CpG island CpG island 14553
Tssr38285 4 108165432 to 108165441 9 + TSS region transcription start site region 38285
Echdc2 4 108165437 to 108179308 13871 + protein coding gene enoyl Coenzyme A hydratase domain containing 2
Tssr38286 4 108165449 to 108165524 75 + TSS region transcription start site region 38286
Tssr38287 4 108170138 to 108170142 4 + TSS region transcription start site region 38287
Zyg11a 4 108181738 to 108218048 36310 - protein coding gene zyg-11 family member A, cell cycle regulator
Cpgi14554 4 108217242 to 108218238 996 CpG island CpG island 14554
Gm40222 4 108217980 to 108220462 2482 + lncRNA gene predicted gene, 40222
Tssr42718 4 108218007 to 108218048 41 - TSS region transcription start site region 42718
Tssr42719 4 108225328 to 108225336 8 - TSS region transcription start site region 42719
Tssr42720 4 108225379 to 108225388 9 - TSS region transcription start site region 42720
Zyg11b 4 108229724 to 108301096 71372 - protein coding gene zyg-ll family member B, cell cycle regulator
Tssr42721 4 108296555 to 108296559 4 - TSS region transcription start site region 42721
Cpgi14555 4 108300447 to 108301269 822 CpG island CpG island 14555
Tssr42722 4 108301045 to 108301107 62 - TSS region transcription start site region 42722
Tssr42723 4 108301114 to 108301125 11 - TSS region transcription start site region 42723
Tssr38288 4 108301315 to 108301327 12 + TSS region transcription start site region 38288
Gm12742 4 108310356 to 108311151 795 - pseudogene predicted gene 12742
Gm12740 4 108322338 to 108322645 307 + pseudogene predicted gene 12740
Cpgi14556 4 108328012 to 108328562 550 CpG island CpG island 14556
Tssr38289 4 108328136 to 108328180 44 + TSS region transcription start site region 38289
Coa7 4 108328152 to 108340718 12566 + protein coding gene cytochrome c oxidase assembly factor 7
Gm46889 4 108345493 to 108351197 5704 - lncRNA gene predicted gene, 46889
Cpgi14557 4 108360144 to 108360418 274 CpG island CpG island 14557
Shisal2a 4 108367777 to 108383349 15572 - protein coding gene shisa like 2A
Cpgi14558 4 108383040 to 108383914 874 CpG island CpG island 14558
Gm32297 4 108383295 to 108406608 23313 + lncRNA gene predicted gene, 32297