Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:107815802-107975815

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrp8 4 107802261 to 107876840 74579 + protein coding gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
Lrp8os2 4 107806033 to 107823022 16989 - antisense lncRNA gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2
Lrp8os1 4 107827896 to 107830844 2948 - antisense lncRNA gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1
Tssr38270 4 107830949 to 107830957 8 + TSS region transcription start site region 38270
Tssr38271 4 107830958 to 107830967 9 + TSS region transcription start site region 38271
Cpgi14545 4 107845969 to 107847040 1071 CpG island CpG island 14545
Cpgi14546 4 107879523 to 107880155 632 CpG island CpG island 14546
Tssr38272 4 107879745 to 107879796 51 + TSS region transcription start site region 38272
Magoh 4 107879755 to 107887424 7669 + protein coding gene mago homolog, exon junction complex core component
Tssr38273 4 107879805 to 107879823 18 + TSS region transcription start site region 38273
Tssr38274 4 107879829 to 107879840 11 + TSS region transcription start site region 38274
Tssr38275 4 107883067 to 107883074 7 + TSS region transcription start site region 38275
Cpgi14547 4 107889430 to 107890337 907 CpG island CpG island 14547
Tssr42697 4 107889768 to 107889801 33 - TSS region transcription start site region 42697
Czib 4 107889785 to 107897802 8017 + protein coding gene CXXC motif containing zinc binding protein
Tssr38276 4 107889830 to 107889880 50 + TSS region transcription start site region 38276
Tssr38277 4 107890094 to 107890129 35 + TSS region transcription start site region 38277
Tssr38278 4 107890219 to 107890270 51 + TSS region transcription start site region 38278
Tssr38279 4 107890273 to 107890295 22 + TSS region transcription start site region 38279
Tssr38280 4 107895802 to 107895815 13 + TSS region transcription start site region 38280
Cpt2 4 107903982 to 107923589 19607 - protein coding gene carnitine palmitoyltransferase 2
Cpgi14548 4 107923238 to 107923772 534 CpG island CpG island 14548
Tssr42698 4 107923479 to 107923495 16 - TSS region transcription start site region 42698
Tssr42699 4 107923508 to 107923517 9 - TSS region transcription start site region 42699
Tssr42700 4 107923519 to 107923615 96 - TSS region transcription start site region 42700
Gm40221 4 107937471 to 107947374 9903 + lncRNA gene predicted gene, 40221
Tssr38281 4 107953907 to 107953940 33 + TSS region transcription start site region 38281
4930407G08Rik 4 107953932 to 107960721 6789 + lincRNA gene RIKEN cDNA 4930407G08 gene
Slc1a7 4 107968334 to 108013532 45198 + protein coding gene solute carrier family 1 (glutamate transporter), member 7
Tssr38282 4 107968400 to 107968424 24 + TSS region transcription start site region 38282
Tssr38283 4 107968434 to 107968446 12 + TSS region transcription start site region 38283
Tssr38284 4 107968602 to 107968645 43 + TSS region transcription start site region 38284