Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:107808136-108848180

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrp8 4 107802261 to 107876840 74579 + protein coding gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
Lrp8os2 4 107806033 to 107823022 16989 - antisense lncRNA gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2
Tssr38269 4 107812254 to 107812258 4 + TSS region transcription start site region 38269
Lrp8os1 4 107827896 to 107830844 2948 - antisense lncRNA gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1
Tssr38270 4 107830949 to 107830957 8 + TSS region transcription start site region 38270
Tssr38271 4 107830958 to 107830967 9 + TSS region transcription start site region 38271
Cpgi14545 4 107845969 to 107847040 1071 CpG island CpG island 14545
Cpgi14546 4 107879523 to 107880155 632 CpG island CpG island 14546
Tssr38272 4 107879745 to 107879796 51 + TSS region transcription start site region 38272
Magoh 4 107879755 to 107887424 7669 + protein coding gene mago homolog, exon junction complex core component
Tssr38273 4 107879805 to 107879823 18 + TSS region transcription start site region 38273
Tssr38274 4 107879829 to 107879840 11 + TSS region transcription start site region 38274
Tssr38275 4 107883067 to 107883074 7 + TSS region transcription start site region 38275
Cpgi14547 4 107889430 to 107890337 907 CpG island CpG island 14547
Tssr42697 4 107889768 to 107889801 33 - TSS region transcription start site region 42697
Czib 4 107889785 to 107897802 8017 + protein coding gene CXXC motif containing zinc binding protein
Tssr38276 4 107889830 to 107889880 50 + TSS region transcription start site region 38276
Tssr38277 4 107890094 to 107890129 35 + TSS region transcription start site region 38277
Tssr38278 4 107890219 to 107890270 51 + TSS region transcription start site region 38278
Tssr38279 4 107890273 to 107890295 22 + TSS region transcription start site region 38279
Tssr38280 4 107895802 to 107895815 13 + TSS region transcription start site region 38280
Cpt2 4 107903982 to 107923589 19607 - protein coding gene carnitine palmitoyltransferase 2
Cpgi14548 4 107923238 to 107923772 534 CpG island CpG island 14548
Tssr42698 4 107923479 to 107923495 16 - TSS region transcription start site region 42698
Tssr42699 4 107923508 to 107923517 9 - TSS region transcription start site region 42699
Tssr42700 4 107923519 to 107923615 96 - TSS region transcription start site region 42700
Gm40221 4 107937471 to 107947374 9903 + lncRNA gene predicted gene, 40221
Tssr38281 4 107953907 to 107953940 33 + TSS region transcription start site region 38281
4930407G08Rik 4 107953932 to 107960721 6789 + lincRNA gene RIKEN cDNA 4930407G08 gene
Slc1a7 4 107968334 to 108013532 45198 + protein coding gene solute carrier family 1 (glutamate transporter), member 7
Tssr38282 4 107968400 to 107968424 24 + TSS region transcription start site region 38282
Tssr38283 4 107968434 to 107968446 12 + TSS region transcription start site region 38283
Tssr38284 4 107968602 to 107968645 43 + TSS region transcription start site region 38284
Tssr1254 4 107981687 to 107981692 5 + TSS region transcription start site region 1254
Podn 4 108014793 to 108032090 17297 - protein coding gene podocan
Cpgi14549 4 108021184 to 108021620 436 CpG island CpG island 14549
Tssr42701 4 108027307 to 108027343 36 - TSS region transcription start site region 42701
Cpgi14550 4 108030993 to 108032579 1586 CpG island CpG island 14550
Tssr42702 4 108031894 to 108031905 11 - TSS region transcription start site region 42702
Tssr42703 4 108031938 to 108031961 23 - TSS region transcription start site region 42703
Tssr42704 4 108032069 to 108032098 29 - TSS region transcription start site region 42704
Gm23354 4 108041697 to 108041800 103 - snRNA gene predicted gene, 23354
Scp2 4 108043830 to 108144971 101141 - protein coding gene sterol carrier protein 2, liver
Tssr42705 4 108051877 to 108051918 41 - TSS region transcription start site region 42705
Tssr42706 4 108069964 to 108069968 4 - TSS region transcription start site region 42706
Cpgi14551 4 108071304 to 108071624 320 CpG island CpG island 14551
Tssr42707 4 108071327 to 108071408 81 - TSS region transcription start site region 42707
Tssr42708 4 108071643 to 108071652 9 - TSS region transcription start site region 42708
Tssr42709 4 108074461 to 108074476 15 - TSS region transcription start site region 42709
Tssr42710 4 108080767 to 108080809 42 - TSS region transcription start site region 42710
Mir6397 4 108087357 to 108087449 92 + miRNA gene microRNA 6397
Tssr1255 4 108101511 to 108101516 5 + TSS region transcription start site region 1255
Tssr42711 4 108105146 to 108105159 13 - TSS region transcription start site region 42711
Cpgi14552 4 108118195 to 108118758 563 CpG island CpG island 14552
Tssr42712 4 108118470 to 108118498 28 - TSS region transcription start site region 42712
Tssr42713 4 108118505 to 108118521 16 - TSS region transcription start site region 42713
Tssr42714 4 108118528 to 108118553 25 - TSS region transcription start site region 42714
Tssr42715 4 108118733 to 108118779 46 - TSS region transcription start site region 42715
Tssr42716 4 108144952 to 108144984 32 - TSS region transcription start site region 42716
Tssr42717 4 108144986 to 108145020 34 - TSS region transcription start site region 42717
Cpgi14553 4 108165239 to 108165814 575 CpG island CpG island 14553
Tssr38285 4 108165432 to 108165441 9 + TSS region transcription start site region 38285
Echdc2 4 108165437 to 108179308 13871 + protein coding gene enoyl Coenzyme A hydratase domain containing 2
Tssr38286 4 108165449 to 108165524 75 + TSS region transcription start site region 38286
Tssr38287 4 108170138 to 108170142 4 + TSS region transcription start site region 38287
Zyg11a 4 108181738 to 108218048 36310 - protein coding gene zyg-11 family member A, cell cycle regulator
Cpgi14554 4 108217242 to 108218238 996 CpG island CpG island 14554
Gm40222 4 108217980 to 108220462 2482 + lncRNA gene predicted gene, 40222
Tssr42718 4 108218007 to 108218048 41 - TSS region transcription start site region 42718
Tssr42719 4 108225328 to 108225336 8 - TSS region transcription start site region 42719
Tssr42720 4 108225379 to 108225388 9 - TSS region transcription start site region 42720
Zyg11b 4 108229724 to 108301096 71372 - protein coding gene zyg-ll family member B, cell cycle regulator
Tssr42721 4 108296555 to 108296559 4 - TSS region transcription start site region 42721
Cpgi14555 4 108300447 to 108301269 822 CpG island CpG island 14555
Tssr42722 4 108301045 to 108301107 62 - TSS region transcription start site region 42722
Tssr42723 4 108301114 to 108301125 11 - TSS region transcription start site region 42723
Tssr38288 4 108301315 to 108301327 12 + TSS region transcription start site region 38288
Gm12742 4 108310356 to 108311151 795 - pseudogene predicted gene 12742
Gm12740 4 108322338 to 108322645 307 + pseudogene predicted gene 12740
Cpgi14556 4 108328012 to 108328562 550 CpG island CpG island 14556
Tssr38289 4 108328136 to 108328180 44 + TSS region transcription start site region 38289
Coa7 4 108328152 to 108340718 12566 + protein coding gene cytochrome c oxidase assembly factor 7
Gm46889 4 108345493 to 108351197 5704 - lncRNA gene predicted gene, 46889
Cpgi14557 4 108360144 to 108360418 274 CpG island CpG island 14557
Shisal2a 4 108367777 to 108383349 15572 - protein coding gene shisa like 2A
Cpgi14558 4 108383040 to 108383914 874 CpG island CpG island 14558
Gm32297 4 108383295 to 108406608 23313 + lncRNA gene predicted gene, 32297
Tssr38290 4 108391449 to 108391461 12 + TSS region transcription start site region 38290
Gpx7 4 108400217 to 108406713 6496 - protein coding gene glutathione peroxidase 7
Cpgi14559 4 108406208 to 108406903 695 CpG island CpG island 14559
Tssr42724 4 108406676 to 108406745 69 - TSS region transcription start site region 42724
Gm40223 4 108430637 to 108454167 23530 + lncRNA gene predicted gene, 40223
Tssr38291 4 108431375 to 108431382 7 + TSS region transcription start site region 38291
Gm12738 4 108450807 to 108451342 535 - pseudogene predicted gene 12738
Tssr42725 4 108451362 to 108451371 9 - TSS region transcription start site region 42725
Tssr38292 4 108458801 to 108458838 37 + TSS region transcription start site region 38292
Cpgi14560 4 108459095 to 108460908 1813 CpG island CpG island 14560
Tssr38293 4 108459389 to 108459451 62 + TSS region transcription start site region 38293
Tut4 4 108459426 to 108559421 99995 + protein coding gene terminal uridylyl transferase 4
Tssr38294 4 108459781 to 108459795 14 + TSS region transcription start site region 38294
Tssr38295 4 108459921 to 108459928 7 + TSS region transcription start site region 38295
Tssr38296 4 108460000 to 108460030 30 + TSS region transcription start site region 38296
Tssr42726 4 108460702 to 108460713 11 - TSS region transcription start site region 42726
Tssr38297 4 108460819 to 108460842 23 + TSS region transcription start site region 38297
Tssr38298 4 108460921 to 108460932 11 + TSS region transcription start site region 38298
Gm24967 4 108466944 to 108467050 106 - snRNA gene predicted gene, 24967
Tssr38299 4 108467038 to 108467042 4 + TSS region transcription start site region 38299
Tssr38300 4 108473601 to 108473605 4 + TSS region transcription start site region 38300
Tssr38301 4 108478892 to 108478909 17 + TSS region transcription start site region 38301
Tssr38302 4 108478967 to 108478980 13 + TSS region transcription start site region 38302
Tssr38303 4 108479211 to 108479224 13 + TSS region transcription start site region 38303
Gm12739 4 108484171 to 108484552 381 - pseudogene predicted gene 12739
Gm23138 4 108498044 to 108498146 102 + snRNA gene predicted gene, 23138
Gm12737 4 108513781 to 108516817 3036 + sense intronic lncRNA gene predicted gene 12737
Gm25827 4 108521924 to 108522030 106 - snRNA gene predicted gene, 25827
Gm22345 4 108537491 to 108537597 106 - snRNA gene predicted gene, 22345
Tssr42727 4 108552415 to 108552416 1 - TSS region transcription start site region 42727
Prpf38a 4 108564867 to 108579336 14469 - protein coding gene PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
Cpgi14561 4 108578805 to 108579875 1070 CpG island CpG island 14561
Tssr42728 4 108579096 to 108579107 11 - TSS region transcription start site region 42728
Tssr42729 4 108579109 to 108579151 42 - TSS region transcription start site region 42729
Tssr42730 4 108579174 to 108579188 14 - TSS region transcription start site region 42730
Tssr42731 4 108579248 to 108579308 60 - TSS region transcription start site region 42731
Tssr42732 4 108579321 to 108579329 8 - TSS region transcription start site region 42732
Tssr42733 4 108579330 to 108579352 22 - TSS region transcription start site region 42733
Tssr38304 4 108579418 to 108579427 9 + TSS region transcription start site region 38304
Orc1 4 108579423 to 108614833 35410 + protein coding gene origin recognition complex, subunit 1
Tssr38305 4 108579445 to 108579470 25 + TSS region transcription start site region 38305
Tssr38306 4 108579481 to 108579489 8 + TSS region transcription start site region 38306
Gm12743 4 108592425 to 108619849 27424 - unclassified non-coding RNA gene predicted gene 12743
Cpgi14562 4 108619341 to 108620673 1332 CpG island CpG island 14562
Tssr38307 4 108619925 to 108619994 69 + TSS region transcription start site region 38307
Cc2d1b 4 108619940 to 108634123 14183 + protein coding gene coiled-coil and C2 domain containing 1B
Tssr38308 4 108620009 to 108620027 18 + TSS region transcription start site region 38308
Gm20731 4 108622929 to 108625216 2287 - protein coding gene predicted gene, 20731
Tssr38309 4 108633085 to 108633094 9 + TSS region transcription start site region 38309
Tssr38310 4 108633096 to 108633103 7 + TSS region transcription start site region 38310
Tssr38311 4 108633120 to 108633131 11 + TSS region transcription start site region 38311
Gm17354 4 108633843 to 108637441 3598 - lincRNA gene predicted gene, 17354
Zfyve9 4 108637466 to 108780798 143332 - protein coding gene zinc finger, FYVE domain containing 9
Tssr42734 4 108638623 to 108638636 13 - TSS region transcription start site region 42734
Tssr38312 4 108643141 to 108643150 9 + TSS region transcription start site region 38312
3110021N24Rik 4 108719649 to 108781904 62255 + protein coding gene RIKEN cDNA 3110021N24 gene
Gm12741 4 108731742 to 108732297 555 + pseudogene predicted gene 12741
Cpgi14563 4 108779835 to 108781152 1317 CpG island CpG island 14563
Tssr42735 4 108780640 to 108780760 120 - TSS region transcription start site region 42735
Tssr42736 4 108780782 to 108780803 21 - TSS region transcription start site region 42736
Tssr42737 4 108780811 to 108780848 37 - TSS region transcription start site region 42737
Btf3l4 4 108814295 to 108833614 19319 - protein coding gene basic transcription factor 3-like 4
Cpgi14564 4 108832899 to 108834139 1240 CpG island CpG island 14564
Tssr42738 4 108833544 to 108833597 53 - TSS region transcription start site region 42738
Tssr42739 4 108833608 to 108833626 18 - TSS region transcription start site region 42739
Tssr42740 4 108834239 to 108834254 15 - TSS region transcription start site region 42740
Tssr38313 4 108834610 to 108834617 7 + TSS region transcription start site region 38313
Tssr38314 4 108834647 to 108834705 58 + TSS region transcription start site region 38314
Cpgi14565 4 108834662 to 108835140 478 CpG island CpG island 14565
Txndc12 4 108834678 to 108862120 27442 + protein coding gene thioredoxin domain containing 12 (endoplasmic reticulum)
Tssr38315 4 108834709 to 108834751 42 + TSS region transcription start site region 38315
Tssr38316 4 108834802 to 108834807 5 + TSS region transcription start site region 38316
A730015C16Rik 4 108847399 to 108848619 1220 - unclassified gene RIKEN cDNA A730015C16 gene
Cpgi14566 4 108847744 to 108848903 1159 CpG island CpG island 14566
Tssr38317 4 108847827 to 108847895 68 + TSS region transcription start site region 38317
Kti12 4 108847857 to 108849412 1555 + protein coding gene KTI12 homolog, chromatin associated
Tssr38318 4 108847897 to 108847925 28 + TSS region transcription start site region 38318