Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:107179446-107799723

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14537 4 107178160 to 107179463 1303 CpG island CpG island 14537
Tmem59 4 107178630 to 107200996 22366 + protein coding gene transmembrane protein 59
Tssr38225 4 107179856 to 107179860 4 + TSS region transcription start site region 38225
Tssr38226 4 107200352 to 107200363 11 + TSS region transcription start site region 38226
Tssr38227 4 107200572 to 107200609 37 + TSS region transcription start site region 38227
Tssr38228 4 107200631 to 107200735 104 + TSS region transcription start site region 38228
Tssr38229 4 107200756 to 107200778 22 + TSS region transcription start site region 38229
Tssr38230 4 107200802 to 107200818 16 + TSS region transcription start site region 38230
Tssr38231 4 107209138 to 107209159 21 + TSS region transcription start site region 38231
Ldlrad1 4 107209180 to 107218060 8880 + protein coding gene low density lipoprotein receptor class A domain containing 1
Lrrc42 4 107233514 to 107253532 20018 - protein coding gene leucine rich repeat containing 42
Tssr42676 4 107239279 to 107239283 4 - TSS region transcription start site region 42676
Cpgi14538 4 107253004 to 107254214 1210 CpG island CpG island 14538
Tssr1253 4 107253228 to 107253242 14 + TSS region transcription start site region 1253
Tssr38232 4 107253255 to 107253280 25 + TSS region transcription start site region 38232
Tssr42677 4 107253327 to 107253356 29 - TSS region transcription start site region 42677
Tssr42678 4 107253363 to 107253377 14 - TSS region transcription start site region 42678
Tssr42679 4 107253388 to 107253406 18 - TSS region transcription start site region 42679
Tssr42680 4 107253441 to 107253491 50 - TSS region transcription start site region 42680
Tssr42681 4 107253513 to 107253524 11 - TSS region transcription start site region 42681
Hspb11 4 107253593 to 107279938 26345 + protein coding gene heat shock protein family B (small), member 11
Tssr38233 4 107253887 to 107253902 15 + TSS region transcription start site region 38233
Tssr38234 4 107253912 to 107253918 6 + TSS region transcription start site region 38234
Tssr38235 4 107253919 to 107253939 20 + TSS region transcription start site region 38235
Tssr38236 4 107257118 to 107257122 4 + TSS region transcription start site region 38236
Tssr38237 4 107262365 to 107262423 58 + TSS region transcription start site region 38237
Gm12850 4 107270434 to 107270869 435 + pseudogene predicted gene 12850
Dio1 4 107291465 to 107307168 15703 - protein coding gene deiodinase, iodothyronine, type I
Tssr38238 4 107291841 to 107291853 12 + TSS region transcription start site region 38238
Tssr42682 4 107307128 to 107307161 33 - TSS region transcription start site region 42682
Cpgi14539 4 107314161 to 107314464 303 CpG island CpG island 14539
Tssr38239 4 107314351 to 107314362 11 + TSS region transcription start site region 38239
Tssr38240 4 107314363 to 107314397 34 + TSS region transcription start site region 38240
Yipf1 4 107314363 to 107359823 45460 + protein coding gene Yip1 domain family, member 1
Tssr38241 4 107314399 to 107314424 25 + TSS region transcription start site region 38241
Gm12870 4 107327484 to 107328499 1015 - pseudogene predicted gene 12870
Tssr38242 4 107347418 to 107347443 25 + TSS region transcription start site region 38242
Gm12869 4 107349039 to 107351353 2314 - antisense lncRNA gene predicted gene 12869
Tssr38243 4 107356668 to 107356685 17 + TSS region transcription start site region 38243
Tssr38244 4 107357759 to 107357783 24 + TSS region transcription start site region 38244
Cpgi14540 4 107367597 to 107368393 796 CpG island CpG island 14540
Tssr38245 4 107367729 to 107367754 25 + TSS region transcription start site region 38245
Tssr38246 4 107367757 to 107367813 56 + TSS region transcription start site region 38246
Ndc1 4 107367784 to 107416346 48562 + protein coding gene NDC1 transmembrane nucleoporin
Tssr38247 4 107368004 to 107368038 34 + TSS region transcription start site region 38247
Tssr38248 4 107368039 to 107368057 18 + TSS region transcription start site region 38248
Tssr38249 4 107368061 to 107368072 11 + TSS region transcription start site region 38249
Tssr38250 4 107368075 to 107368084 9 + TSS region transcription start site region 38250
Tssr38251 4 107368321 to 107368340 19 + TSS region transcription start site region 38251
Tssr38252 4 107381101 to 107381119 18 + TSS region transcription start site region 38252
Tssr38253 4 107381122 to 107381125 3 + TSS region transcription start site region 38253
Tssr38254 4 107381126 to 107381130 4 + TSS region transcription start site region 38254
Tssr38255 4 107381142 to 107381147 5 + TSS region transcription start site region 38255
Gm46866 4 107433777 to 107434488 711 - lncRNA gene predicted gene, 46866
Cpgi14541 4 107433989 to 107436049 2060 CpG island CpG island 14541
Tssr38256 4 107434570 to 107434599 29 + TSS region transcription start site region 38256
Gm24804 4 107434572 to 107434656 84 + miRNA gene predicted gene, 24804
Glis1 4 107434591 to 107635061 200470 + protein coding gene GLIS family zinc finger 1
Tssr38257 4 107434619 to 107434654 35 + TSS region transcription start site region 38257
Tssr42683 4 107437680 to 107437685 5 - TSS region transcription start site region 42683
Tssr38258 4 107468611 to 107468643 32 + TSS region transcription start site region 38258
Cpgi14542 4 107489446 to 107489723 277 CpG island CpG island 14542
4930552P06Rik 4 107591846 to 107601258 9412 - lncRNA gene RIKEN cDNA 4930552P06 gene
Dmrtb1 4 107676290 to 107684230 7940 - protein coding gene DMRT-like family B with proline-rich C-terminal, 1
Tssr42684 4 107679380 to 107679395 15 - TSS region transcription start site region 42684
Tssr38259 4 107679421 to 107679439 18 + TSS region transcription start site region 38259
Tssr42685 4 107680741 to 107680770 29 - TSS region transcription start site region 42685
Tssr42686 4 107680771 to 107680847 76 - TSS region transcription start site region 42686
Tssr42687 4 107680850 to 107680871 21 - TSS region transcription start site region 42687
Tssr42688 4 107680875 to 107680887 12 - TSS region transcription start site region 42688
Tssr42689 4 107680903 to 107680942 39 - TSS region transcription start site region 42689
Tssr42690 4 107680958 to 107680985 27 - TSS region transcription start site region 42690
Cpgi14543 4 107683484 to 107684257 773 CpG island CpG island 14543
Tssr42691 4 107683530 to 107683574 44 - TSS region transcription start site region 42691
Tssr42692 4 107683576 to 107683592 16 - TSS region transcription start site region 42692
Tssr42693 4 107684228 to 107684231 3 - TSS region transcription start site region 42693
Gm12899 4 107688128 to 107688678 550 + pseudogene predicted gene 12899
Tssr38260 4 107688489 to 107688493 4 + TSS region transcription start site region 38260
1700047F07Rik 4 107689600 to 107744284 54684 + lincRNA gene RIKEN cDNA 1700047F07 gene
Gm25123 4 107697834 to 107697954 120 - miRNA gene predicted gene, 25123
Gm31682 4 107698160 to 107736535 38375 - lncRNA gene predicted gene, 31682
Tssr38261 4 107707030 to 107707048 18 + TSS region transcription start site region 38261
Tssr38262 4 107707056 to 107707062 6 + TSS region transcription start site region 38262
Tssr38263 4 107707066 to 107707072 6 + TSS region transcription start site region 38263
Tssr38264 4 107707076 to 107707079 3 + TSS region transcription start site region 38264
Tssr38265 4 107707094 to 107707099 5 + TSS region transcription start site region 38265
D4Mit43 4 107733471 to 107733584 113 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 43
Cmmm 4 107733471 to 107733584 113 QTL carcinoma modifier of MSM
Gm12906 4 107760025 to 107760465 440 - pseudogene predicted gene 12906
Gm12907 4 107765080 to 107770601 5521 + lincRNA gene predicted gene 12907
Tssr38266 4 107783701 to 107783720 19 + TSS region transcription start site region 38266
4933424M12Rik 4 107783720 to 107789921 6201 + lincRNA gene RIKEN cDNA 4933424M12 gene
Lrp8os3 4 107793161 to 107802064 8903 - bidirectional promoter lncRNA gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 3