Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:106924446-108054723

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssbp3 4 106911470 to 107049694 138224 + protein coding gene single-stranded DNA binding protein 3
Tssr38200 4 106937321 to 106937325 4 + TSS region transcription start site region 38200
Tssr38201 4 106947234 to 106947250 16 + TSS region transcription start site region 38201
Tssr42656 4 106947904 to 106947910 6 - TSS region transcription start site region 42656
Tssr38202 4 106949421 to 106949430 9 + TSS region transcription start site region 38202
Tssr38203 4 106953513 to 106953517 4 + TSS region transcription start site region 38203
Tssr38204 4 107002593 to 107002628 35 + TSS region transcription start site region 38204
Tssr38205 4 107002713 to 107002726 13 + TSS region transcription start site region 38205
Tssr38206 4 107009700 to 107009726 26 + TSS region transcription start site region 38206
Gm12786 4 107017935 to 107022499 4564 - antisense lncRNA gene predicted gene 12786
Tssr38207 4 107036114 to 107036125 11 + TSS region transcription start site region 38207
Tssr38208 4 107036133 to 107036152 19 + TSS region transcription start site region 38208
Tssr38209 4 107047431 to 107047437 6 + TSS region transcription start site region 38209
Tssr38210 4 107048144 to 107048182 38 + TSS region transcription start site region 38210
Tssr38211 4 107048433 to 107048448 15 + TSS region transcription start site region 38211
Tssr38212 4 107050084 to 107050088 4 + TSS region transcription start site region 38212
Mrpl37 4 107055874 to 107066866 10992 - protein coding gene mitochondrial ribosomal protein L37
Tssr42657 4 107057453 to 107057495 42 - TSS region transcription start site region 42657
Tssr42658 4 107057502 to 107057520 18 - TSS region transcription start site region 42658
Tssr42659 4 107058864 to 107058876 12 - TSS region transcription start site region 42659
Tssr42660 4 107058913 to 107058922 9 - TSS region transcription start site region 42660
Tssr42661 4 107058923 to 107058929 6 - TSS region transcription start site region 42661
Tssr42662 4 107064718 to 107064729 11 - TSS region transcription start site region 42662
Cpgi14536 4 107066282 to 107067625 1343 CpG island CpG island 14536
Tssr42663 4 107066837 to 107066866 29 - TSS region transcription start site region 42663
Cyb5rl 4 107066910 to 107087993 21083 + protein coding gene cytochrome b5 reductase-like
Tssr38213 4 107066985 to 107067007 22 + TSS region transcription start site region 38213
Tssr38214 4 107067012 to 107067027 15 + TSS region transcription start site region 38214
Cdcp2 4 107096891 to 107107748 10857 + protein coding gene CUB domain containing protein 2
Tssr38215 4 107097597 to 107097603 6 + TSS region transcription start site region 38215
Stheal4 4 107112430 to 107112550 120 QTL soft tissue heal 4
D4Mit31 4 107112430 to 107112550 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 31
Gm12802 4 107126613 to 107136252 9639 + antisense lncRNA gene predicted gene 12802
Tssr38216 4 107126617 to 107126622 5 + TSS region transcription start site region 38216
Tssr38217 4 107126672 to 107126689 17 + TSS region transcription start site region 38217
Tssr38218 4 107126698 to 107126716 18 + TSS region transcription start site region 38218
Tssr38219 4 107127027 to 107127030 3 + TSS region transcription start site region 38219
Tssr38220 4 107127945 to 107127949 4 + TSS region transcription start site region 38220
Tceanc2 4 107134162 to 107178366 44204 - protein coding gene transcription elongation factor A (SII) N-terminal and central domain containing 2
Tssr42664 4 107135047 to 107135050 3 - TSS region transcription start site region 42664
Tssr38221 4 107135131 to 107135135 4 + TSS region transcription start site region 38221
Tssr42665 4 107177623 to 107177634 11 - TSS region transcription start site region 42665
Tssr42666 4 107177699 to 107177712 13 - TSS region transcription start site region 42666
Tssr42667 4 107177713 to 107177723 10 - TSS region transcription start site region 42667
Tssr42668 4 107177728 to 107177735 7 - TSS region transcription start site region 42668
Tssr42669 4 107177756 to 107177772 16 - TSS region transcription start site region 42669
Tssr42670 4 107177782 to 107177803 21 - TSS region transcription start site region 42670
Tssr42671 4 107177806 to 107177848 42 - TSS region transcription start site region 42671
Cpgi14537 4 107178160 to 107179463 1303 CpG island CpG island 14537
Tssr42672 4 107178296 to 107178338 42 - TSS region transcription start site region 42672
Tssr42673 4 107178340 to 107178355 15 - TSS region transcription start site region 42673
Tssr42674 4 107178360 to 107178373 13 - TSS region transcription start site region 42674
Tssr1252 4 107178369 to 107178417 48 + TSS region transcription start site region 1252
Tssr38222 4 107178418 to 107178466 48 + TSS region transcription start site region 38222
Tmem59 4 107178630 to 107200996 22366 + protein coding gene transmembrane protein 59
Tssr38223 4 107178660 to 107178671 11 + TSS region transcription start site region 38223
Tssr38224 4 107178686 to 107178723 37 + TSS region transcription start site region 38224
Tssr42675 4 107179316 to 107179326 10 - TSS region transcription start site region 42675
Tssr38225 4 107179856 to 107179860 4 + TSS region transcription start site region 38225
Tssr38226 4 107200352 to 107200363 11 + TSS region transcription start site region 38226
Tssr38227 4 107200572 to 107200609 37 + TSS region transcription start site region 38227
Tssr38228 4 107200631 to 107200735 104 + TSS region transcription start site region 38228
Tssr38229 4 107200756 to 107200778 22 + TSS region transcription start site region 38229
Tssr38230 4 107200802 to 107200818 16 + TSS region transcription start site region 38230
Tssr38231 4 107209138 to 107209159 21 + TSS region transcription start site region 38231
Ldlrad1 4 107209180 to 107218060 8880 + protein coding gene low density lipoprotein receptor class A domain containing 1
Lrrc42 4 107233514 to 107253532 20018 - protein coding gene leucine rich repeat containing 42
Tssr42676 4 107239279 to 107239283 4 - TSS region transcription start site region 42676
Cpgi14538 4 107253004 to 107254214 1210 CpG island CpG island 14538
Tssr1253 4 107253228 to 107253242 14 + TSS region transcription start site region 1253
Tssr38232 4 107253255 to 107253280 25 + TSS region transcription start site region 38232
Tssr42677 4 107253327 to 107253356 29 - TSS region transcription start site region 42677
Tssr42678 4 107253363 to 107253377 14 - TSS region transcription start site region 42678
Tssr42679 4 107253388 to 107253406 18 - TSS region transcription start site region 42679
Tssr42680 4 107253441 to 107253491 50 - TSS region transcription start site region 42680
Tssr42681 4 107253513 to 107253524 11 - TSS region transcription start site region 42681
Hspb11 4 107253593 to 107279938 26345 + protein coding gene heat shock protein family B (small), member 11
Tssr38233 4 107253887 to 107253902 15 + TSS region transcription start site region 38233
Tssr38234 4 107253912 to 107253918 6 + TSS region transcription start site region 38234
Tssr38235 4 107253919 to 107253939 20 + TSS region transcription start site region 38235
Tssr38236 4 107257118 to 107257122 4 + TSS region transcription start site region 38236
Tssr38237 4 107262365 to 107262423 58 + TSS region transcription start site region 38237
Gm12850 4 107270434 to 107270869 435 + pseudogene predicted gene 12850
Dio1 4 107291465 to 107307168 15703 - protein coding gene deiodinase, iodothyronine, type I
Tssr38238 4 107291841 to 107291853 12 + TSS region transcription start site region 38238
Tssr42682 4 107307128 to 107307161 33 - TSS region transcription start site region 42682
Cpgi14539 4 107314161 to 107314464 303 CpG island CpG island 14539
Tssr38239 4 107314351 to 107314362 11 + TSS region transcription start site region 38239
Tssr38240 4 107314363 to 107314397 34 + TSS region transcription start site region 38240
Yipf1 4 107314363 to 107359823 45460 + protein coding gene Yip1 domain family, member 1
Tssr38241 4 107314399 to 107314424 25 + TSS region transcription start site region 38241
Gm12870 4 107327484 to 107328499 1015 - pseudogene predicted gene 12870
Tssr38242 4 107347418 to 107347443 25 + TSS region transcription start site region 38242
Gm12869 4 107349039 to 107351353 2314 - antisense lncRNA gene predicted gene 12869
Tssr38243 4 107356668 to 107356685 17 + TSS region transcription start site region 38243
Tssr38244 4 107357759 to 107357783 24 + TSS region transcription start site region 38244
Cpgi14540 4 107367597 to 107368393 796 CpG island CpG island 14540
Tssr38245 4 107367729 to 107367754 25 + TSS region transcription start site region 38245
Tssr38246 4 107367757 to 107367813 56 + TSS region transcription start site region 38246
Ndc1 4 107367784 to 107416346 48562 + protein coding gene NDC1 transmembrane nucleoporin
Tssr38247 4 107368004 to 107368038 34 + TSS region transcription start site region 38247
Tssr38248 4 107368039 to 107368057 18 + TSS region transcription start site region 38248
Tssr38249 4 107368061 to 107368072 11 + TSS region transcription start site region 38249
Tssr38250 4 107368075 to 107368084 9 + TSS region transcription start site region 38250
Tssr38251 4 107368321 to 107368340 19 + TSS region transcription start site region 38251
Tssr38252 4 107381101 to 107381119 18 + TSS region transcription start site region 38252
Tssr38253 4 107381122 to 107381125 3 + TSS region transcription start site region 38253
Tssr38254 4 107381126 to 107381130 4 + TSS region transcription start site region 38254
Tssr38255 4 107381142 to 107381147 5 + TSS region transcription start site region 38255
Gm46866 4 107433777 to 107434488 711 - lncRNA gene predicted gene, 46866
Cpgi14541 4 107433989 to 107436049 2060 CpG island CpG island 14541
Tssr38256 4 107434570 to 107434599 29 + TSS region transcription start site region 38256
Gm24804 4 107434572 to 107434656 84 + miRNA gene predicted gene, 24804
Glis1 4 107434591 to 107635061 200470 + protein coding gene GLIS family zinc finger 1
Tssr38257 4 107434619 to 107434654 35 + TSS region transcription start site region 38257
Tssr42683 4 107437680 to 107437685 5 - TSS region transcription start site region 42683
Tssr38258 4 107468611 to 107468643 32 + TSS region transcription start site region 38258
Cpgi14542 4 107489446 to 107489723 277 CpG island CpG island 14542
4930552P06Rik 4 107591846 to 107601258 9412 - lncRNA gene RIKEN cDNA 4930552P06 gene
Dmrtb1 4 107676290 to 107684230 7940 - protein coding gene DMRT-like family B with proline-rich C-terminal, 1
Tssr42684 4 107679380 to 107679395 15 - TSS region transcription start site region 42684
Tssr38259 4 107679421 to 107679439 18 + TSS region transcription start site region 38259
Tssr42685 4 107680741 to 107680770 29 - TSS region transcription start site region 42685
Tssr42686 4 107680771 to 107680847 76 - TSS region transcription start site region 42686
Tssr42687 4 107680850 to 107680871 21 - TSS region transcription start site region 42687
Tssr42688 4 107680875 to 107680887 12 - TSS region transcription start site region 42688
Tssr42689 4 107680903 to 107680942 39 - TSS region transcription start site region 42689
Tssr42690 4 107680958 to 107680985 27 - TSS region transcription start site region 42690
Cpgi14543 4 107683484 to 107684257 773 CpG island CpG island 14543
Tssr42691 4 107683530 to 107683574 44 - TSS region transcription start site region 42691
Tssr42692 4 107683576 to 107683592 16 - TSS region transcription start site region 42692
Tssr42693 4 107684228 to 107684231 3 - TSS region transcription start site region 42693
Gm12899 4 107688128 to 107688678 550 + pseudogene predicted gene 12899
Tssr38260 4 107688489 to 107688493 4 + TSS region transcription start site region 38260
1700047F07Rik 4 107689600 to 107744284 54684 + lincRNA gene RIKEN cDNA 1700047F07 gene
Gm25123 4 107697834 to 107697954 120 - miRNA gene predicted gene, 25123
Gm31682 4 107698160 to 107736535 38375 - lncRNA gene predicted gene, 31682
Tssr38261 4 107707030 to 107707048 18 + TSS region transcription start site region 38261
Tssr38262 4 107707056 to 107707062 6 + TSS region transcription start site region 38262
Tssr38263 4 107707066 to 107707072 6 + TSS region transcription start site region 38263
Tssr38264 4 107707076 to 107707079 3 + TSS region transcription start site region 38264
Tssr38265 4 107707094 to 107707099 5 + TSS region transcription start site region 38265
D4Mit43 4 107733471 to 107733584 113 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 43
Cmmm 4 107733471 to 107733584 113 QTL carcinoma modifier of MSM
Gm12906 4 107760025 to 107760465 440 - pseudogene predicted gene 12906
Gm12907 4 107765080 to 107770601 5521 + lincRNA gene predicted gene 12907
Tssr38266 4 107783701 to 107783720 19 + TSS region transcription start site region 38266
4933424M12Rik 4 107783720 to 107789921 6201 + lincRNA gene RIKEN cDNA 4933424M12 gene
Lrp8os3 4 107793161 to 107802064 8903 - bidirectional promoter lncRNA gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 3
Cpgi14544 4 107801600 to 107804168 2568 CpG island CpG island 14544
Tssr38267 4 107802210 to 107802272 62 + TSS region transcription start site region 38267
Lrp8 4 107802261 to 107876840 74579 + protein coding gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
Tssr38268 4 107802281 to 107802297 16 + TSS region transcription start site region 38268
Tssr42694 4 107803365 to 107803369 4 - TSS region transcription start site region 42694
Tssr42695 4 107803381 to 107803392 11 - TSS region transcription start site region 42695
Tssr42696 4 107803674 to 107803697 23 - TSS region transcription start site region 42696
Lrp8os2 4 107806033 to 107823022 16989 - antisense lncRNA gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 2
Tssr38269 4 107812254 to 107812258 4 + TSS region transcription start site region 38269
Lrp8os1 4 107827896 to 107830844 2948 - antisense lncRNA gene low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1
Tssr38270 4 107830949 to 107830957 8 + TSS region transcription start site region 38270
Tssr38271 4 107830958 to 107830967 9 + TSS region transcription start site region 38271
Cpgi14545 4 107845969 to 107847040 1071 CpG island CpG island 14545
Cpgi14546 4 107879523 to 107880155 632 CpG island CpG island 14546
Tssr38272 4 107879745 to 107879796 51 + TSS region transcription start site region 38272
Magoh 4 107879755 to 107887424 7669 + protein coding gene mago homolog, exon junction complex core component
Tssr38273 4 107879805 to 107879823 18 + TSS region transcription start site region 38273
Tssr38274 4 107879829 to 107879840 11 + TSS region transcription start site region 38274
Tssr38275 4 107883067 to 107883074 7 + TSS region transcription start site region 38275
Cpgi14547 4 107889430 to 107890337 907 CpG island CpG island 14547
Tssr42697 4 107889768 to 107889801 33 - TSS region transcription start site region 42697
Czib 4 107889785 to 107897802 8017 + protein coding gene CXXC motif containing zinc binding protein
Tssr38276 4 107889830 to 107889880 50 + TSS region transcription start site region 38276
Tssr38277 4 107890094 to 107890129 35 + TSS region transcription start site region 38277
Tssr38278 4 107890219 to 107890270 51 + TSS region transcription start site region 38278
Tssr38279 4 107890273 to 107890295 22 + TSS region transcription start site region 38279
Tssr38280 4 107895802 to 107895815 13 + TSS region transcription start site region 38280
Cpt2 4 107903982 to 107923589 19607 - protein coding gene carnitine palmitoyltransferase 2
Cpgi14548 4 107923238 to 107923772 534 CpG island CpG island 14548
Tssr42698 4 107923479 to 107923495 16 - TSS region transcription start site region 42698
Tssr42699 4 107923508 to 107923517 9 - TSS region transcription start site region 42699
Tssr42700 4 107923519 to 107923615 96 - TSS region transcription start site region 42700
Gm40221 4 107937471 to 107947374 9903 + lncRNA gene predicted gene, 40221
Tssr38281 4 107953907 to 107953940 33 + TSS region transcription start site region 38281
4930407G08Rik 4 107953932 to 107960721 6789 + lincRNA gene RIKEN cDNA 4930407G08 gene
Slc1a7 4 107968334 to 108013532 45198 + protein coding gene solute carrier family 1 (glutamate transporter), member 7
Tssr38282 4 107968400 to 107968424 24 + TSS region transcription start site region 38282
Tssr38283 4 107968434 to 107968446 12 + TSS region transcription start site region 38283
Tssr38284 4 107968602 to 107968645 43 + TSS region transcription start site region 38284
Tssr1254 4 107981687 to 107981692 5 + TSS region transcription start site region 1254
Podn 4 108014793 to 108032090 17297 - protein coding gene podocan
Cpgi14549 4 108021184 to 108021620 436 CpG island CpG island 14549
Tssr42701 4 108027307 to 108027343 36 - TSS region transcription start site region 42701
Cpgi14550 4 108030993 to 108032579 1586 CpG island CpG island 14550
Tssr42702 4 108031894 to 108031905 11 - TSS region transcription start site region 42702
Tssr42703 4 108031938 to 108031961 23 - TSS region transcription start site region 42703
Tssr42704 4 108032069 to 108032098 29 - TSS region transcription start site region 42704
Gm23354 4 108041697 to 108041800 103 - snRNA gene predicted gene, 23354
Scp2 4 108043830 to 108144971 101141 - protein coding gene sterol carrier protein 2, liver
Tssr42705 4 108051877 to 108051918 41 - TSS region transcription start site region 42705