Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:105518714-106675068

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr38165 4 105578295 to 105578302 7 + TSS region transcription start site region 38165
Gm12726 4 105578340 to 105578940 600 + pseudogene predicted gene 12726
Tssr38166 4 105718906 to 105718928 22 + TSS region transcription start site region 38166
Tssr38167 4 105794173 to 105794181 8 + TSS region transcription start site region 38167
Gm12728 4 105794178 to 105794909 731 + pseudogene predicted gene 12728
Gm29922 4 105841215 to 105845708 4493 - lncRNA gene predicted gene, 29922
D4Mit168 4 105944542 to 105944663 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 168
Pabr2 4 105944663 to 46332646 -59612017 QTL plasma apolipoprotein B (human) regulator 2
Gm24363 4 105975575 to 105975885 310 - unclassified non-coding RNA gene predicted gene, 24363
Pwbwq8 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 8
Pwgrq4 4 105978113 to 141706527 35728414 QTL pre-weaning growth rate QTL 4
Pwbwq9 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 9
Pwbwq4 4 105978113 to 141706527 35728414 QTL pre-weaning body weight QTL 4
Gm30266 4 106037315 to 106048796 11481 - lncRNA gene predicted gene, 30266
Gm30199 4 106053995 to 106057803 3808 - lncRNA gene predicted gene, 30199
Gm12729 4 106088714 to 106105068 16354 - lincRNA gene predicted gene 12729
Gm12727 4 106098924 to 106099282 358 + pseudogene predicted gene 12727
Gm26047 4 106118968 to 106119080 112 - snoRNA gene predicted gene, 26047
Gm30126 4 106124248 to 106127182 2934 + lncRNA gene predicted gene, 30126
Gm30047 4 106126251 to 106145839 19588 - lncRNA gene predicted gene, 30047
Hspd1-ps4 4 106136111 to 106137778 1667 - pseudogene heat shock protein 1 (chaperonin), pseudogene 4
Tssr42622 4 106145790 to 106145833 43 - TSS region transcription start site region 42622
Tssr42623 4 106167847 to 106167848 1 - TSS region transcription start site region 42623
Gm12724 4 106241216 to 106290026 48810 + lncRNA gene predicted gene 12724
Gm12731 4 106257031 to 106257298 267 + pseudogene predicted gene 12731
Gm12730 4 106291269 to 106292255 986 + lincRNA gene predicted gene 12730
Gm37253 4 106293352 to 106294393 1041 - unclassified gene predicted gene, 37253
Tssr38168 4 106313318 to 106313329 11 + TSS region transcription start site region 38168
Gm30429 4 106314641 to 106316152 1511 - lncRNA gene predicted gene, 30429
Cpgi14522 4 106315471 to 106317198 1727 CpG island CpG island 14522
Tssr38169 4 106315996 to 106316046 50 + TSS region transcription start site region 38169
Tssr38170 4 106316049 to 106316070 21 + TSS region transcription start site region 38170
Tssr38171 4 106316077 to 106316119 42 + TSS region transcription start site region 38171
Tssr38172 4 106316122 to 106316139 17 + TSS region transcription start site region 38172
Tssr42624 4 106316139 to 106316201 62 - TSS region transcription start site region 42624
Tssr38173 4 106316187 to 106316243 56 + TSS region transcription start site region 38173
Tssr42625 4 106316212 to 106316223 11 - TSS region transcription start site region 42625
Usp24 4 106316213 to 106441322 125109 + protein coding gene ubiquitin specific peptidase 24
Tssr42626 4 106316242 to 106316260 18 - TSS region transcription start site region 42626
Tssr38174 4 106316301 to 106316328 27 + TSS region transcription start site region 38174
Gm40218 4 106324430 to 106326355 1925 + lncRNA gene predicted gene, 40218
Pcsk9 4 106442334 to 106464325 21991 - protein coding gene proprotein convertase subtilisin/kexin type 9
Cpgi14523 4 106463503 to 106464499 996 CpG island CpG island 14523
Tssr42627 4 106464077 to 106464120 43 - TSS region transcription start site region 42627
Tssr42628 4 106464167 to 106464181 14 - TSS region transcription start site region 42628
Tssr38175 4 106464228 to 106464232 4 + TSS region transcription start site region 38175
Tssr1251 4 106464453 to 106464466 13 + TSS region transcription start site region 1251
Gm30487 4 106464629 to 106477388 12759 + lncRNA gene predicted gene, 30487
Bsnd 4 106483456 to 106492243 8787 - protein coding gene barttin CLCNK type accessory beta subunit
Tssr42629 4 106492187 to 106492200 13 - TSS region transcription start site region 42629
Tssr42630 4 106492223 to 106492251 28 - TSS region transcription start site region 42630
Tssr42631 4 106492306 to 106492340 34 - TSS region transcription start site region 42631
Tmem61 4 106498816 to 106506335 7519 - lincRNA gene transmembrane protein 61
2700068H02Rik 4 106554669 to 106557897 3228 - antisense lncRNA gene RIKEN cDNA 2700068H02 gene
Cpgi14524 4 106560412 to 106561731 1319 CpG island CpG island 14524
Tssr38176 4 106561027 to 106561038 11 + TSS region transcription start site region 38176
Dhcr24 4 106561038 to 106589113 28075 + protein coding gene 24-dehydrocholesterol reductase
Tssr38177 4 106561045 to 106561065 20 + TSS region transcription start site region 38177
Tssr38178 4 106561074 to 106561099 25 + TSS region transcription start site region 38178
Cpgi14525 4 106562013 to 106562243 230 CpG island CpG island 14525
Tssr38179 4 106578259 to 106578273 14 + TSS region transcription start site region 38179
Tssr38180 4 106581789 to 106581801 12 + TSS region transcription start site region 38180
Gm12744 4 106587097 to 106589108 2011 - antisense lncRNA gene predicted gene 12744
Tssr38181 4 106587272 to 106587296 24 + TSS region transcription start site region 38181
Tssr38182 4 106587462 to 106587482 20 + TSS region transcription start site region 38182
Tssr38183 4 106588968 to 106588977 9 + TSS region transcription start site region 38183
Lexm 4 106590909 to 106617241 26332 - protein coding gene lymphocyte expansion molecule
Tssr38184 4 106615871 to 106615904 33 + TSS region transcription start site region 38184
Cpgi14526 4 106617106 to 106617441 335 CpG island CpG island 14526
Tssr42632 4 106617214 to 106617226 12 - TSS region transcription start site region 42632
Tssr42633 4 106617232 to 106617240 8 - TSS region transcription start site region 42633
Cpgi14527 4 106622383 to 106623233 850 CpG island CpG island 14527
Tssr38185 4 106622424 to 106622477 53 + TSS region transcription start site region 38185
Ttc22 4 106622449 to 106640196 17747 + protein coding gene tetratricopeptide repeat domain 22
Tssr38186 4 106622486 to 106622511 25 + TSS region transcription start site region 38186
Tssr38187 4 106622528 to 106622542 14 + TSS region transcription start site region 38187
Cpgi14528 4 106638948 to 106639456 508 CpG island CpG island 14528
Cpgi14529 4 106650885 to 106651573 688 CpG island CpG island 14529
Pars2 4 106651069 to 106655282 4213 + protein coding gene prolyl-tRNA synthetase (mitochondrial)(putative)
Tssr38188 4 106651087 to 106651120 33 + TSS region transcription start site region 38188
Ttc4 4 106662256 to 106678944 16688 - protein coding gene tetratricopeptide repeat domain 4