Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:105059173-106529181

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkaa2 4 105029874 to 105109890 80016 - protein coding gene protein kinase, AMP-activated, alpha 2 catalytic subunit
Cpgi14519 4 105109087 to 105110506 1419 CpG island CpG island 14519
Tssr42616 4 105109732 to 105109743 11 - TSS region transcription start site region 42616
Tssr42617 4 105109803 to 105109819 16 - TSS region transcription start site region 42617
Tssr42618 4 105109829 to 105109913 84 - TSS region transcription start site region 42618
Gm36893 4 105109982 to 105112322 2340 + lncRNA gene predicted gene, 36893
Tssr42619 4 105110072 to 105110085 13 - TSS region transcription start site region 42619
Tssr42620 4 105110596 to 105110603 7 - TSS region transcription start site region 42620
Gm29838 4 105153123 to 105156032 2909 - lncRNA gene predicted gene, 29838
Tssr38146 4 105157257 to 105157268 11 + TSS region transcription start site region 38146
Cpgi14520 4 105157267 to 105158562 1295 CpG island CpG island 14520
Tssr38147 4 105157339 to 105157354 15 + TSS region transcription start site region 38147
Plpp3 4 105157347 to 105232764 75417 + protein coding gene phospholipid phosphatase 3
Tssr38148 4 105157357 to 105157374 17 + TSS region transcription start site region 38148
Tssr38149 4 105157415 to 105157426 11 + TSS region transcription start site region 38149
Tssr38150 4 105157428 to 105157463 35 + TSS region transcription start site region 38150
Tssr38151 4 105157475 to 105157480 5 + TSS region transcription start site region 38151
Tssr38152 4 105157490 to 105157508 18 + TSS region transcription start site region 38152
Tssr38153 4 105157593 to 105157604 11 + TSS region transcription start site region 38153
Tssr38154 4 105157628 to 105157635 7 + TSS region transcription start site region 38154
Tssr1250 4 105165870 to 105165875 5 + TSS region transcription start site region 1250
Tssr38155 4 105170538 to 105170544 6 + TSS region transcription start site region 38155
Tssr38156 4 105172191 to 105172195 4 + TSS region transcription start site region 38156
Tssr38157 4 105193116 to 105193120 4 + TSS region transcription start site region 38157
6030451C04Rik 4 105200735 to 105201912 1177 unclassified gene RIKEN cDNA 6030451C04 gene
Tssr38158 4 105224303 to 105224315 12 + TSS region transcription start site region 38158
Cpgi14521 4 105245872 to 105246027 155 CpG island CpG island 14521
Tssr38159 4 105257099 to 105257107 8 + TSS region transcription start site region 38159
Tssr38160 4 105258537 to 105258559 22 + TSS region transcription start site region 38160
Tssr38161 4 105258614 to 105258622 8 + TSS region transcription start site region 38161
Tssr38162 4 105261349 to 105261354 5 + TSS region transcription start site region 38162
Tssr38163 4 105267452 to 105267462 10 + TSS region transcription start site region 38163
Tssr38164 4 105267508 to 105267526 18 + TSS region transcription start site region 38164
Tssr42621 4 105268446 to 105268474 28 - TSS region transcription start site region 42621
D4Mit306 4 105299678 to 105299798 120 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 306
Ath8 4 105299798 to 45658442 -59641356 QTL atherosclerosis 8
Gm40217 4 105310378 to 105319147 8769 - lncRNA gene predicted gene, 40217
D4Ertd31e 4 105346009 to 105346222 213 DNA segment DNA segment, Chr 4, ERATO Doi 31, expressed
Gm12722 4 105374454 to 105374946 492 - pseudogene predicted gene 12722
Gm12723 4 105511232 to 105511682 450 + pseudogene predicted gene 12723
Tssr38165 4 105578295 to 105578302 7 + TSS region transcription start site region 38165
Gm12726 4 105578340 to 105578940 600 + pseudogene predicted gene 12726
Tssr38166 4 105718906 to 105718928 22 + TSS region transcription start site region 38166
Tssr38167 4 105794173 to 105794181 8 + TSS region transcription start site region 38167
Gm12728 4 105794178 to 105794909 731 + pseudogene predicted gene 12728
Gm29922 4 105841215 to 105845708 4493 - lncRNA gene predicted gene, 29922
D4Mit168 4 105944542 to 105944663 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 168
Pabr2 4 105944663 to 46332646 -59612017 QTL plasma apolipoprotein B (human) regulator 2
Gm24363 4 105975575 to 105975885 310 - unclassified non-coding RNA gene predicted gene, 24363
Pwgrq4 4 105978113 to 141706527 35728414 QTL pre-weaning growth rate QTL 4
Pwbwq4 4 105978113 to 141706527 35728414 QTL pre-weaning body weight QTL 4
Pwbwq8 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 8
Pwbwq9 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 9
Gm30266 4 106037315 to 106048796 11481 - lncRNA gene predicted gene, 30266
Gm30199 4 106053995 to 106057803 3808 - lncRNA gene predicted gene, 30199
Gm12729 4 106088714 to 106105068 16354 - lincRNA gene predicted gene 12729
Gm12727 4 106098924 to 106099282 358 + pseudogene predicted gene 12727
Gm26047 4 106118968 to 106119080 112 - snoRNA gene predicted gene, 26047
Gm30126 4 106124248 to 106127182 2934 + lncRNA gene predicted gene, 30126
Gm30047 4 106126251 to 106145839 19588 - lncRNA gene predicted gene, 30047
Hspd1-ps4 4 106136111 to 106137778 1667 - pseudogene heat shock protein 1 (chaperonin), pseudogene 4
Tssr42622 4 106145790 to 106145833 43 - TSS region transcription start site region 42622
Tssr42623 4 106167847 to 106167848 1 - TSS region transcription start site region 42623
Gm12724 4 106241216 to 106290026 48810 + lncRNA gene predicted gene 12724
Gm12731 4 106257031 to 106257298 267 + pseudogene predicted gene 12731
Gm12730 4 106291269 to 106292255 986 + lincRNA gene predicted gene 12730
Gm37253 4 106293352 to 106294393 1041 - unclassified gene predicted gene, 37253
Tssr38168 4 106313318 to 106313329 11 + TSS region transcription start site region 38168
Gm30429 4 106314641 to 106316152 1511 - lncRNA gene predicted gene, 30429
Cpgi14522 4 106315471 to 106317198 1727 CpG island CpG island 14522
Tssr38169 4 106315996 to 106316046 50 + TSS region transcription start site region 38169
Tssr38170 4 106316049 to 106316070 21 + TSS region transcription start site region 38170
Tssr38171 4 106316077 to 106316119 42 + TSS region transcription start site region 38171
Tssr38172 4 106316122 to 106316139 17 + TSS region transcription start site region 38172
Tssr42624 4 106316139 to 106316201 62 - TSS region transcription start site region 42624
Tssr38173 4 106316187 to 106316243 56 + TSS region transcription start site region 38173
Tssr42625 4 106316212 to 106316223 11 - TSS region transcription start site region 42625
Usp24 4 106316213 to 106441322 125109 + protein coding gene ubiquitin specific peptidase 24
Tssr42626 4 106316242 to 106316260 18 - TSS region transcription start site region 42626
Tssr38174 4 106316301 to 106316328 27 + TSS region transcription start site region 38174
Gm40218 4 106324430 to 106326355 1925 + lncRNA gene predicted gene, 40218
Pcsk9 4 106442334 to 106464325 21991 - protein coding gene proprotein convertase subtilisin/kexin type 9
Cpgi14523 4 106463503 to 106464499 996 CpG island CpG island 14523
Tssr42627 4 106464077 to 106464120 43 - TSS region transcription start site region 42627
Tssr42628 4 106464167 to 106464181 14 - TSS region transcription start site region 42628
Tssr38175 4 106464228 to 106464232 4 + TSS region transcription start site region 38175
Tssr1251 4 106464453 to 106464466 13 + TSS region transcription start site region 1251
Gm30487 4 106464629 to 106477388 12759 + lncRNA gene predicted gene, 30487
Bsnd 4 106483456 to 106492243 8787 - protein coding gene barttin CLCNK type accessory beta subunit
Tssr42629 4 106492187 to 106492200 13 - TSS region transcription start site region 42629
Tssr42630 4 106492223 to 106492251 28 - TSS region transcription start site region 42630
Tssr42631 4 106492306 to 106492340 34 - TSS region transcription start site region 42631
Tmem61 4 106498816 to 106506335 7519 - lincRNA gene transmembrane protein 61