Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:105056789-108106801

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376 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkaa2 4 105029874 to 105109890 80016 - protein coding gene protein kinase, AMP-activated, alpha 2 catalytic subunit
Cpgi14519 4 105109087 to 105110506 1419 CpG island CpG island 14519
Tssr42616 4 105109732 to 105109743 11 - TSS region transcription start site region 42616
Tssr42617 4 105109803 to 105109819 16 - TSS region transcription start site region 42617
Tssr42618 4 105109829 to 105109913 84 - TSS region transcription start site region 42618
Gm36893 4 105109982 to 105112322 2340 + lncRNA gene predicted gene, 36893
Tssr42619 4 105110072 to 105110085 13 - TSS region transcription start site region 42619
Tssr42620 4 105110596 to 105110603 7 - TSS region transcription start site region 42620
Gm29838 4 105153123 to 105156032 2909 - lncRNA gene predicted gene, 29838
Tssr38146 4 105157257 to 105157268 11 + TSS region transcription start site region 38146
Cpgi14520 4 105157267 to 105158562 1295 CpG island CpG island 14520
Tssr38147 4 105157339 to 105157354 15 + TSS region transcription start site region 38147
Plpp3 4 105157347 to 105232764 75417 + protein coding gene phospholipid phosphatase 3
Tssr38148 4 105157357 to 105157374 17 + TSS region transcription start site region 38148
Tssr38149 4 105157415 to 105157426 11 + TSS region transcription start site region 38149
Tssr38150 4 105157428 to 105157463 35 + TSS region transcription start site region 38150
Tssr38151 4 105157475 to 105157480 5 + TSS region transcription start site region 38151
Tssr38152 4 105157490 to 105157508 18 + TSS region transcription start site region 38152
Tssr38153 4 105157593 to 105157604 11 + TSS region transcription start site region 38153
Tssr38154 4 105157628 to 105157635 7 + TSS region transcription start site region 38154
Tssr1250 4 105165870 to 105165875 5 + TSS region transcription start site region 1250
Tssr38155 4 105170538 to 105170544 6 + TSS region transcription start site region 38155
Tssr38156 4 105172191 to 105172195 4 + TSS region transcription start site region 38156
Tssr38157 4 105193116 to 105193120 4 + TSS region transcription start site region 38157
6030451C04Rik 4 105200735 to 105201912 1177 unclassified gene RIKEN cDNA 6030451C04 gene
Tssr38158 4 105224303 to 105224315 12 + TSS region transcription start site region 38158
Cpgi14521 4 105245872 to 105246027 155 CpG island CpG island 14521
Tssr38159 4 105257099 to 105257107 8 + TSS region transcription start site region 38159
Tssr38160 4 105258537 to 105258559 22 + TSS region transcription start site region 38160
Tssr38161 4 105258614 to 105258622 8 + TSS region transcription start site region 38161
Tssr38162 4 105261349 to 105261354 5 + TSS region transcription start site region 38162
Tssr38163 4 105267452 to 105267462 10 + TSS region transcription start site region 38163
Tssr38164 4 105267508 to 105267526 18 + TSS region transcription start site region 38164
Tssr42621 4 105268446 to 105268474 28 - TSS region transcription start site region 42621
D4Mit306 4 105299678 to 105299798 120 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 306
Ath8 4 105299798 to 45658442 -59641356 QTL atherosclerosis 8
Gm40217 4 105310378 to 105319147 8769 - lncRNA gene predicted gene, 40217
D4Ertd31e 4 105346009 to 105346222 213 DNA segment DNA segment, Chr 4, ERATO Doi 31, expressed
Gm12722 4 105374454 to 105374946 492 - pseudogene predicted gene 12722
Gm12723 4 105511232 to 105511682 450 + pseudogene predicted gene 12723
Tssr38165 4 105578295 to 105578302 7 + TSS region transcription start site region 38165
Gm12726 4 105578340 to 105578940 600 + pseudogene predicted gene 12726
Tssr38166 4 105718906 to 105718928 22 + TSS region transcription start site region 38166
Tssr38167 4 105794173 to 105794181 8 + TSS region transcription start site region 38167
Gm12728 4 105794178 to 105794909 731 + pseudogene predicted gene 12728
Gm29922 4 105841215 to 105845708 4493 - lncRNA gene predicted gene, 29922
D4Mit168 4 105944542 to 105944663 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 168
Pabr2 4 105944663 to 46332646 -59612017 QTL plasma apolipoprotein B (human) regulator 2
Gm24363 4 105975575 to 105975885 310 - unclassified non-coding RNA gene predicted gene, 24363
Pwgrq4 4 105978113 to 141706527 35728414 QTL pre-weaning growth rate QTL 4
Pwbwq9 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 9
Pwbwq8 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 8
Pwbwq4 4 105978113 to 141706527 35728414 QTL pre-weaning body weight QTL 4
Gm30266 4 106037315 to 106048796 11481 - lncRNA gene predicted gene, 30266
Gm30199 4 106053995 to 106057803 3808 - lncRNA gene predicted gene, 30199
Gm12729 4 106088714 to 106105068 16354 - lincRNA gene predicted gene 12729
Gm12727 4 106098924 to 106099282 358 + pseudogene predicted gene 12727
Gm26047 4 106118968 to 106119080 112 - snoRNA gene predicted gene, 26047
Gm30126 4 106124248 to 106127182 2934 + lncRNA gene predicted gene, 30126
Gm30047 4 106126251 to 106145839 19588 - lncRNA gene predicted gene, 30047
Hspd1-ps4 4 106136111 to 106137778 1667 - pseudogene heat shock protein 1 (chaperonin), pseudogene 4
Tssr42622 4 106145790 to 106145833 43 - TSS region transcription start site region 42622
Tssr42623 4 106167847 to 106167848 1 - TSS region transcription start site region 42623
Gm12724 4 106241216 to 106290026 48810 + lncRNA gene predicted gene 12724
Gm12731 4 106257031 to 106257298 267 + pseudogene predicted gene 12731
Gm12730 4 106291269 to 106292255 986 + lincRNA gene predicted gene 12730
Gm37253 4 106293352 to 106294393 1041 - unclassified gene predicted gene, 37253
Tssr38168 4 106313318 to 106313329 11 + TSS region transcription start site region 38168
Gm30429 4 106314641 to 106316152 1511 - lncRNA gene predicted gene, 30429
Cpgi14522 4 106315471 to 106317198 1727 CpG island CpG island 14522
Tssr38169 4 106315996 to 106316046 50 + TSS region transcription start site region 38169
Tssr38170 4 106316049 to 106316070 21 + TSS region transcription start site region 38170
Tssr38171 4 106316077 to 106316119 42 + TSS region transcription start site region 38171
Tssr38172 4 106316122 to 106316139 17 + TSS region transcription start site region 38172
Tssr42624 4 106316139 to 106316201 62 - TSS region transcription start site region 42624
Tssr38173 4 106316187 to 106316243 56 + TSS region transcription start site region 38173
Tssr42625 4 106316212 to 106316223 11 - TSS region transcription start site region 42625
Usp24 4 106316213 to 106441322 125109 + protein coding gene ubiquitin specific peptidase 24
Tssr42626 4 106316242 to 106316260 18 - TSS region transcription start site region 42626
Tssr38174 4 106316301 to 106316328 27 + TSS region transcription start site region 38174
Gm40218 4 106324430 to 106326355 1925 + lncRNA gene predicted gene, 40218
Pcsk9 4 106442334 to 106464325 21991 - protein coding gene proprotein convertase subtilisin/kexin type 9
Cpgi14523 4 106463503 to 106464499 996 CpG island CpG island 14523
Tssr42627 4 106464077 to 106464120 43 - TSS region transcription start site region 42627
Tssr42628 4 106464167 to 106464181 14 - TSS region transcription start site region 42628
Tssr38175 4 106464228 to 106464232 4 + TSS region transcription start site region 38175
Tssr1251 4 106464453 to 106464466 13 + TSS region transcription start site region 1251
Gm30487 4 106464629 to 106477388 12759 + lncRNA gene predicted gene, 30487
Bsnd 4 106483456 to 106492243 8787 - protein coding gene barttin CLCNK type accessory beta subunit
Tssr42629 4 106492187 to 106492200 13 - TSS region transcription start site region 42629
Tssr42630 4 106492223 to 106492251 28 - TSS region transcription start site region 42630
Tssr42631 4 106492306 to 106492340 34 - TSS region transcription start site region 42631
Tmem61 4 106498816 to 106506335 7519 - lincRNA gene transmembrane protein 61
2700068H02Rik 4 106554669 to 106557897 3228 - antisense lncRNA gene RIKEN cDNA 2700068H02 gene
Cpgi14524 4 106560412 to 106561731 1319 CpG island CpG island 14524
Tssr38176 4 106561027 to 106561038 11 + TSS region transcription start site region 38176
Dhcr24 4 106561038 to 106589113 28075 + protein coding gene 24-dehydrocholesterol reductase
Tssr38177 4 106561045 to 106561065 20 + TSS region transcription start site region 38177
Tssr38178 4 106561074 to 106561099 25 + TSS region transcription start site region 38178
Cpgi14525 4 106562013 to 106562243 230 CpG island CpG island 14525
Tssr38179 4 106578259 to 106578273 14 + TSS region transcription start site region 38179
Tssr38180 4 106581789 to 106581801 12 + TSS region transcription start site region 38180
Gm12744 4 106587097 to 106589108 2011 - antisense lncRNA gene predicted gene 12744
Tssr38181 4 106587272 to 106587296 24 + TSS region transcription start site region 38181
Tssr38182 4 106587462 to 106587482 20 + TSS region transcription start site region 38182
Tssr38183 4 106588968 to 106588977 9 + TSS region transcription start site region 38183
Lexm 4 106590909 to 106617241 26332 - protein coding gene lymphocyte expansion molecule
Tssr38184 4 106615871 to 106615904 33 + TSS region transcription start site region 38184
Cpgi14526 4 106617106 to 106617441 335 CpG island CpG island 14526
Tssr42632 4 106617214 to 106617226 12 - TSS region transcription start site region 42632
Tssr42633 4 106617232 to 106617240 8 - TSS region transcription start site region 42633
Cpgi14527 4 106622383 to 106623233 850 CpG island CpG island 14527
Tssr38185 4 106622424 to 106622477 53 + TSS region transcription start site region 38185
Ttc22 4 106622449 to 106640196 17747 + protein coding gene tetratricopeptide repeat domain 22
Tssr38186 4 106622486 to 106622511 25 + TSS region transcription start site region 38186
Tssr38187 4 106622528 to 106622542 14 + TSS region transcription start site region 38187
Cpgi14528 4 106638948 to 106639456 508 CpG island CpG island 14528
Cpgi14529 4 106650885 to 106651573 688 CpG island CpG island 14529
Pars2 4 106651069 to 106655282 4213 + protein coding gene prolyl-tRNA synthetase (mitochondrial)(putative)
Tssr38188 4 106651087 to 106651120 33 + TSS region transcription start site region 38188
Ttc4 4 106662256 to 106678944 16688 - protein coding gene tetratricopeptide repeat domain 4
Cpgi14530 4 106678566 to 106679105 539 CpG island CpG island 14530
Tssr42634 4 106678632 to 106678642 10 - TSS region transcription start site region 42634
Tssr42635 4 106678643 to 106678654 11 - TSS region transcription start site region 42635
Tssr42636 4 106678655 to 106678678 23 - TSS region transcription start site region 42636
Tssr42637 4 106678680 to 106678704 24 - TSS region transcription start site region 42637
Tssr42638 4 106678713 to 106678718 5 - TSS region transcription start site region 42638
Tssr42639 4 106678874 to 106678916 42 - TSS region transcription start site region 42639
Tssr42640 4 106678933 to 106678942 9 - TSS region transcription start site region 42640
Mroh7 4 106680417 to 106730925 50508 - protein coding gene maestro heat-like repeat family member 7
Tssr42641 4 106727981 to 106728001 20 - TSS region transcription start site region 42641
Tssr42642 4 106730958 to 106730975 17 - TSS region transcription start site region 42642
Tssr38189 4 106733883 to 106733898 15 + TSS region transcription start site region 38189
Fam151a 4 106733915 to 106748292 14377 + protein coding gene family with sequence simliarity 151, member A
Tssr42643 4 106738014 to 106738027 13 - TSS region transcription start site region 42643
Acot11 4 106744555 to 106804998 60443 - protein coding gene acyl-CoA thioesterase 11
Gm12745 4 106774816 to 106775029 213 + pseudogene predicted gene 12745
Tssr42644 4 106799737 to 106799750 13 - TSS region transcription start site region 42644
Tssr42645 4 106799779 to 106799840 61 - TSS region transcription start site region 42645
Tssr42646 4 106800291 to 106800303 12 - TSS region transcription start site region 42646
Cpgi14531 4 106804841 to 106805200 359 CpG island CpG island 14531
Tssr42647 4 106805085 to 106805099 14 - TSS region transcription start site region 42647
Gm31065 4 106814909 to 106828344 13435 - lncRNA gene predicted gene, 31065
Cpgi14532 4 106827583 to 106828458 875 CpG island CpG island 14532
Tssr38190 4 106836900 to 106836905 5 + TSS region transcription start site region 38190
Cpgi14533 4 106837943 to 106838252 309 CpG island CpG island 14533
Cpgi14534 4 106838834 to 106840612 1778 CpG island CpG island 14534
Gm31125 4 106839278 to 106840161 883 - lncRNA gene predicted gene, 31125
Tssr42648 4 106840021 to 106840050 29 - TSS region transcription start site region 42648
Tssr38191 4 106840207 to 106840246 39 + TSS region transcription start site region 38191
Gm12746 4 106841761 to 106847920 6159 - lincRNA gene predicted gene 12746
Tssr42649 4 106855136 to 106855162 26 - TSS region transcription start site region 42649
Tssr42650 4 106855830 to 106855842 12 - TSS region transcription start site region 42650
Tssr42651 4 106859377 to 106859389 12 - TSS region transcription start site region 42651
Tssr42652 4 106859587 to 106859596 9 - TSS region transcription start site region 42652
Tssr42653 4 106859598 to 106859620 22 - TSS region transcription start site region 42653
Tssr38192 4 106859721 to 106859755 34 + TSS region transcription start site region 38192
Tssr42654 4 106865950 to 106865956 6 - TSS region transcription start site region 42654
Tssr38193 4 106867054 to 106867062 8 + TSS region transcription start site region 38193
Tssr38194 4 106867207 to 106867218 11 + TSS region transcription start site region 38194
Gm46865 4 106900213 to 106912896 12683 - lncRNA gene predicted gene, 46865
Tssr38195 4 106910428 to 106910434 6 + TSS region transcription start site region 38195
Cpgi14535 4 106910476 to 106912766 2290 CpG island CpG island 14535
Tssr42655 4 106911351 to 106911354 3 - TSS region transcription start site region 42655
Tssr38196 4 106911435 to 106911446 11 + TSS region transcription start site region 38196
Tssr38197 4 106911470 to 106911505 35 + TSS region transcription start site region 38197
Ssbp3 4 106911470 to 107049694 138224 + protein coding gene single-stranded DNA binding protein 3
Tssr38198 4 106911517 to 106911529 12 + TSS region transcription start site region 38198
Tssr38199 4 106923231 to 106923276 45 + TSS region transcription start site region 38199
Tssr38200 4 106937321 to 106937325 4 + TSS region transcription start site region 38200
Tssr38201 4 106947234 to 106947250 16 + TSS region transcription start site region 38201
Tssr42656 4 106947904 to 106947910 6 - TSS region transcription start site region 42656
Tssr38202 4 106949421 to 106949430 9 + TSS region transcription start site region 38202
Tssr38203 4 106953513 to 106953517 4 + TSS region transcription start site region 38203
Tssr38204 4 107002593 to 107002628 35 + TSS region transcription start site region 38204
Tssr38205 4 107002713 to 107002726 13 + TSS region transcription start site region 38205
Tssr38206 4 107009700 to 107009726 26 + TSS region transcription start site region 38206
Gm12786 4 107017935 to 107022499 4564 - antisense lncRNA gene predicted gene 12786
Tssr38207 4 107036114 to 107036125 11 + TSS region transcription start site region 38207
Tssr38208 4 107036133 to 107036152 19 + TSS region transcription start site region 38208
Tssr38209 4 107047431 to 107047437 6 + TSS region transcription start site region 38209
Tssr38210 4 107048144 to 107048182 38 + TSS region transcription start site region 38210
Tssr38211 4 107048433 to 107048448 15 + TSS region transcription start site region 38211
Tssr38212 4 107050084 to 107050088 4 + TSS region transcription start site region 38212
Mrpl37 4 107055874 to 107066866 10992 - protein coding gene mitochondrial ribosomal protein L37
Tssr42657 4 107057453 to 107057495 42 - TSS region transcription start site region 42657
Tssr42658 4 107057502 to 107057520 18 - TSS region transcription start site region 42658
Tssr42659 4 107058864 to 107058876 12 - TSS region transcription start site region 42659
Tssr42660 4 107058913 to 107058922 9 - TSS region transcription start site region 42660
Tssr42661 4 107058923 to 107058929 6 - TSS region transcription start site region 42661
Tssr42662 4 107064718 to 107064729 11 - TSS region transcription start site region 42662
Cpgi14536 4 107066282 to 107067625 1343 CpG island CpG island 14536
Tssr42663 4 107066837 to 107066866 29 - TSS region transcription start site region 42663
Cyb5rl 4 107066910 to 107087993 21083 + protein coding gene cytochrome b5 reductase-like
Tssr38213 4 107066985 to 107067007 22 + TSS region transcription start site region 38213
Tssr38214 4 107067012 to 107067027 15 + TSS region transcription start site region 38214
Cdcp2 4 107096891 to 107107748 10857 + protein coding gene CUB domain containing protein 2
Tssr38215 4 107097597 to 107097603 6 + TSS region transcription start site region 38215
Stheal4 4 107112430 to 107112550 120 QTL soft tissue heal 4
D4Mit31 4 107112430 to 107112550 120 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 31