Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:10394064-11354145

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46879 4 10392712 to 10409934 17222 - lncRNA gene predicted gene, 46879
Gm11814 4 10438815 to 10439743 928 - pseudogene predicted gene 11814
Gm11815 4 10487956 to 10489362 1406 - lincRNA gene predicted gene 11815
1700123O12Rik 4 10508031 to 10797802 289771 - lincRNA gene RIKEN cDNA 1700123O12 gene
Gm11813 4 10580812 to 10581102 290 + pseudogene predicted gene 11813
Tssr40908 4 10797792 to 10797802 10 - TSS region transcription start site region 40908
Tssr40909 4 10797807 to 10797814 7 - TSS region transcription start site region 40909
Gm12920 4 10813543 to 10814728 1185 + pseudogene predicted gene 12920
Mir3471-1 4 10845500 to 10845630 130 - miRNA gene microRNA 3471-1
Gm12918 4 10848420 to 10849055 635 + pseudogene predicted gene 12918
Gm12919 4 10853843 to 10855436 1593 + pseudogene predicted gene 12919
Cpgi14027 4 10874048 to 10875164 1116 CpG island CpG island 14027
n-TSaga9 4 10874064 to 10874145 81 + tRNA gene nuclear encoded tRNA serine 9 (anticodon AGA)
2610301B20Rik 4 10874498 to 10899425 24927 + protein coding gene RIKEN cDNA 2610301B20 gene
Tssr1119 4 10874507 to 10874526 19 + TSS region transcription start site region 1119
Tssr36458 4 10874538 to 10874607 69 + TSS region transcription start site region 36458
Tssr36459 4 10877336 to 10877339 3 + TSS region transcription start site region 36459
Tssr36460 4 10932677 to 10932688 11 + TSS region transcription start site region 36460
Tssr36461 4 10946584 to 10946598 14 + TSS region transcription start site region 36461
Rps11-ps3 4 10946608 to 10947093 485 + pseudogene ribosomal protein S11, pseudogene 3
Gm2401 4 10987740 to 10990315 2575 + pseudogene predicted gene 2401
Tssr40910 4 10988251 to 10988252 1 - TSS region transcription start site region 40910
Plekhf2 4 10988662 to 11007619 18957 - protein coding gene pleckstrin homology domain containing, family F (with FYVE domain) member 2
Tssr40911 4 10989115 to 10989120 5 - TSS region transcription start site region 40911
Tssr40912 4 10998648 to 10998652 4 - TSS region transcription start site region 40912
Cpgi14028 4 11006946 to 11008247 1301 CpG island CpG island 14028
Tssr40913 4 11007522 to 11007533 11 - TSS region transcription start site region 40913
Tssr40914 4 11007541 to 11007634 93 - TSS region transcription start site region 40914
Tssr40915 4 11007635 to 11007655 20 - TSS region transcription start site region 40915
Gm46843 4 11010449 to 11026700 16251 - lncRNA gene predicted gene, 46843
Gm35429 4 11031796 to 11049868 18072 - lncRNA gene predicted gene, 35429
Ndufaf6 4 11051045 to 11076205 25160 - protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 6
Cpgi14029 4 11075747 to 11076484 737 CpG island CpG island 14029
Tssr40916 4 11076160 to 11076211 51 - TSS region transcription start site region 40916
Tssr1120 4 11105395 to 11105397 2 + TSS region transcription start site region 1120
Gm11827 4 11123350 to 11126998 3648 + lincRNA gene predicted gene 11827
Tssr36462 4 11123950 to 11123980 30 + TSS region transcription start site region 36462
Gm11829 4 11133327 to 11133608 281 + pseudogene predicted gene 11829
Mir684-2 4 11134097 to 11134182 85 + miRNA gene microRNA 684-2
Gm11830 4 11144710 to 11145270 560 + pseudogene predicted gene 11830
Tssr40917 4 11147717 to 11147730 13 - TSS region transcription start site region 40917
Tssr36463 4 11155184 to 11155202 18 + TSS region transcription start site region 36463
Cpgi14030 4 11155994 to 11156966 972 CpG island CpG island 14030
Tssr40918 4 11156209 to 11156224 15 - TSS region transcription start site region 40918
Tssr40919 4 11156242 to 11156258 16 - TSS region transcription start site region 40919
Tssr36464 4 11156411 to 11156453 42 + TSS region transcription start site region 36464
Trp53inp1 4 11156441 to 11174377 17936 + protein coding gene transformation related protein 53 inducible nuclear protein 1
Tssr36465 4 11156468 to 11156483 15 + TSS region transcription start site region 36465
Tssr36466 4 11156765 to 11156778 13 + TSS region transcription start site region 36466
Tssr36467 4 11156828 to 11156837 9 + TSS region transcription start site region 36467
Tssr36468 4 11159316 to 11159321 5 + TSS region transcription start site region 36468
Tssr36469 4 11165259 to 11165286 27 + TSS region transcription start site region 36469
Tssr36470 4 11169799 to 11169808 9 + TSS region transcription start site region 36470
Tssr36471 4 11169913 to 11169942 29 + TSS region transcription start site region 36471
Tssr36472 4 11171898 to 11171964 66 + TSS region transcription start site region 36472
Tssr36473 4 11173832 to 11173881 49 + TSS region transcription start site region 36473
A630034I12Rik 4 11175962 to 11191230 15268 - lncRNA gene RIKEN cDNA A630034I12 gene
Cpgi14031 4 11190312 to 11192465 2153 CpG island CpG island 14031
Tssr40920 4 11191214 to 11191233 19 - TSS region transcription start site region 40920
Ccne2 4 11191351 to 11204779 13428 + protein coding gene cyclin E2
Tssr36474 4 11191417 to 11191424 7 + TSS region transcription start site region 36474
Tssr36475 4 11191776 to 11191789 13 + TSS region transcription start site region 36475
Ints8 4 11199158 to 11254258 55100 - protein coding gene integrator complex subunit 8
Tssr36476 4 11202410 to 11202413 3 + TSS region transcription start site region 36476
Tssr40921 4 11209270 to 11209282 12 - TSS region transcription start site region 40921
Tssr40922 4 11235544 to 11235565 21 - TSS region transcription start site region 40922
Tssr40923 4 11248206 to 11248231 25 - TSS region transcription start site region 40923
Cpgi14032 4 11253439 to 11254482 1043 CpG island CpG island 14032
Tssr40924 4 11254194 to 11254246 52 - TSS region transcription start site region 40924
Tssr40925 4 11254248 to 11254266 18 - TSS region transcription start site region 40925
Dpy19l4 4 11261315 to 11322137 60822 - protein coding gene dpy-19-like 4 (C. elegans)
Gm22940 4 11279265 to 11279419 154 - snRNA gene predicted gene, 22940
Cpgi14033 4 11321604 to 11322506 902 CpG island CpG island 14033
Tssr36477 4 11321900 to 11321913 13 + TSS region transcription start site region 36477
Tssr36478 4 11321930 to 11321937 7 + TSS region transcription start site region 36478
Gm26663 4 11321944 to 11342953 21009 + lincRNA gene predicted gene, 26663
Tssr40926 4 11322076 to 11322089 13 - TSS region transcription start site region 40926
Tssr40927 4 11322109 to 11322146 37 - TSS region transcription start site region 40927
Tssr36479 4 11322230 to 11322248 18 + TSS region transcription start site region 36479
Esrp1 4 11331933 to 11386783 54850 - protein coding gene epithelial splicing regulatory protein 1
Tssr36480 4 11342401 to 11342403 2 + TSS region transcription start site region 36480