Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:103294964-112844968

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835 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930456L15Rik 4 103290959 to 103311832 20873 + lincRNA gene RIKEN cDNA 4930456L15 gene
Gm36523 4 103302836 to 103313555 10719 - lncRNA gene predicted gene, 36523
Cpgi14514 4 103313452 to 103314301 849 CpG island CpG island 14514
Tssr38104 4 103313806 to 103313820 14 + TSS region transcription start site region 38104
Oma1 4 103313812 to 103371868 58056 + protein coding gene OMA1 zinc metallopeptidase
Tssr38105 4 103313827 to 103313856 29 + TSS region transcription start site region 38105
Tssr38106 4 103314493 to 103314504 11 + TSS region transcription start site region 38106
Tssr38107 4 103324907 to 103324953 46 + TSS region transcription start site region 38107
Tssr38108 4 103339855 to 103339864 9 + TSS region transcription start site region 38108
Tssr38109 4 103348703 to 103348708 5 + TSS region transcription start site region 38109
4931409D07Rik 4 103381299 to 103382462 1163 unclassified gene RIKEN cDNA 4931409D07 gene
Gm12718 4 103382500 to 103492040 109540 + lincRNA gene predicted gene 12718
Gm23064 4 103471859 to 103471959 100 + miRNA gene predicted gene, 23064
Gm12720 4 103538845 to 103550682 11837 - unclassified non-coding RNA gene predicted gene 12720
Gm12716 4 103543374 to 103544727 1353 - pseudogene predicted gene 12716
Cpgi14515 4 103563139 to 103563404 265 CpG island CpG island 14515
Tssr38110 4 103563323 to 103563331 8 + TSS region transcription start site region 38110
Gm12715 4 103563402 to 103564529 1127 + pseudogene predicted gene 12715
Tssr38111 4 103563527 to 103563549 22 + TSS region transcription start site region 38111
Gm22801 4 103564203 to 103564286 83 + miRNA gene predicted gene, 22801
Gm25877 4 103586272 to 103586400 128 - snoRNA gene predicted gene, 25877
Gm36604 4 103610421 to 103619145 8724 - lncRNA gene predicted gene, 36604
Tssr38112 4 103619225 to 103619244 19 + TSS region transcription start site region 38112
Cpgi14516 4 103619342 to 103620341 999 CpG island CpG island 14516
Tssr38113 4 103619487 to 103619520 33 + TSS region transcription start site region 38113
Tssr38114 4 103619521 to 103619553 32 + TSS region transcription start site region 38114
Dab1 4 103619546 to 104744844 1125298 + protein coding gene disabled 1
Tssr38115 4 103619580 to 103619592 12 + TSS region transcription start site region 38115
Tssr38116 4 103676806 to 103676811 5 + TSS region transcription start site region 38116
Tssr38117 4 103685760 to 103685765 5 + TSS region transcription start site region 38117
2900034C19Rik 4 103711658 to 103712898 1240 unclassified gene RIKEN cDNA 2900034C19 gene
Tssr38118 4 103804862 to 103804864 2 + TSS region transcription start site region 38118
Tssr38119 4 103851432 to 103851448 16 + TSS region transcription start site region 38119
D4Mit331 4 103903196 to 103903321 125 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 331
Gm12719 4 103939301 to 103939541 240 - pseudogene predicted gene 12719
Gm12717 4 103941323 to 103942120 797 + pseudogene predicted gene 12717
Tssr38120 4 103978863 to 103978865 2 + TSS region transcription start site region 38120
Gm36661 4 103990972 to 104028719 37747 - lncRNA gene predicted gene, 36661
Tssr38121 4 104175154 to 104175188 34 + TSS region transcription start site region 38121
Tssr38122 4 104232959 to 104232966 7 + TSS region transcription start site region 38122
Tssr38123 4 104344075 to 104344111 36 + TSS region transcription start site region 38123
Cpgi14517 4 104366630 to 104368431 1801 CpG island CpG island 14517
Tssr38124 4 104367330 to 104367360 30 + TSS region transcription start site region 38124
Tssr38125 4 104367549 to 104367592 43 + TSS region transcription start site region 38125
Tssr38126 4 104367593 to 104367624 31 + TSS region transcription start site region 38126
Tssr38127 4 104367628 to 104367633 5 + TSS region transcription start site region 38127
Tssr38128 4 104367639 to 104367642 3 + TSS region transcription start site region 38128
Cpgi14518 4 104368777 to 104369001 224 CpG island CpG island 14518
Tssr38129 4 104389879 to 104389882 3 + TSS region transcription start site region 38129
Tssr38130 4 104463974 to 104463977 3 + TSS region transcription start site region 38130
Tssr38131 4 104463983 to 104464013 30 + TSS region transcription start site region 38131
Tssr38132 4 104464021 to 104464031 10 + TSS region transcription start site region 38132
Tssr38133 4 104486537 to 104486539 2 + TSS region transcription start site region 38133
AY512949 4 104528400 to 104532252 3852 unclassified gene cDNA sequence AY512949
D4Mit46.3 4 104614597 to 104614712 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 46.3
Tssr42609 4 104625458 to 104625479 21 - TSS region transcription start site region 42609
Tssr38134 4 104741618 to 104741636 18 + TSS region transcription start site region 38134
Tssr38135 4 104741702 to 104741713 11 + TSS region transcription start site region 38135
Tssr38136 4 104766308 to 104766331 23 + TSS region transcription start site region 38136
C8b 4 104766317 to 104804548 38231 + protein coding gene complement component 8, beta polypeptide
Tssr38137 4 104766334 to 104766389 55 + TSS region transcription start site region 38137
Tssr38138 4 104774007 to 104774015 8 + TSS region transcription start site region 38138
Tssr38139 4 104775857 to 104775878 21 + TSS region transcription start site region 38139
Tssr38140 4 104799198 to 104799219 21 + TSS region transcription start site region 38140
C8a 4 104815679 to 104876398 60719 - protein coding gene complement component 8, alpha polypeptide
Tssr42610 4 104816415 to 104816424 9 - TSS region transcription start site region 42610
Tssr42611 4 104853775 to 104853788 13 - TSS region transcription start site region 42611
Tssr38141 4 104856439 to 104856466 27 + TSS region transcription start site region 38141
Gm17662 4 104857329 to 104859137 1808 + protein coding gene predicted gene, 17662
Tssr42612 4 104858731 to 104858754 23 - TSS region transcription start site region 42612
Tssr42613 4 104876388 to 104876405 17 - TSS region transcription start site region 42613
Tssr42614 4 104876430 to 104876439 9 - TSS region transcription start site region 42614
Tssr42615 4 104876441 to 104876463 22 - TSS region transcription start site region 42615
Gm40216 4 104887207 to 104890083 2876 - lncRNA gene predicted gene, 40216
Fyb2 4 104913456 to 105016863 103407 + protein coding gene FYN binding protein 2
Tssr38142 4 104913513 to 104913524 11 + TSS region transcription start site region 38142
Tssr38143 4 104913554 to 104913579 25 + TSS region transcription start site region 38143
D4Mit75 4 104920618 to 104920774 156 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 75
Tssr38144 4 104936273 to 104936278 5 + TSS region transcription start site region 38144
Tssr38145 4 104936292 to 104936306 14 + TSS region transcription start site region 38145
Gm12721 4 104969862 to 104970129 267 - pseudogene predicted gene 12721
Gm36835 4 104971196 to 104972639 1443 - lncRNA gene predicted gene, 36835
Prkaa2 4 105029874 to 105109890 80016 - protein coding gene protein kinase, AMP-activated, alpha 2 catalytic subunit
Cpgi14519 4 105109087 to 105110506 1419 CpG island CpG island 14519
Tssr42616 4 105109732 to 105109743 11 - TSS region transcription start site region 42616
Tssr42617 4 105109803 to 105109819 16 - TSS region transcription start site region 42617
Tssr42618 4 105109829 to 105109913 84 - TSS region transcription start site region 42618
Gm36893 4 105109982 to 105112322 2340 + lncRNA gene predicted gene, 36893
Tssr42619 4 105110072 to 105110085 13 - TSS region transcription start site region 42619
Tssr42620 4 105110596 to 105110603 7 - TSS region transcription start site region 42620
Gm29838 4 105153123 to 105156032 2909 - lncRNA gene predicted gene, 29838
Tssr38146 4 105157257 to 105157268 11 + TSS region transcription start site region 38146
Cpgi14520 4 105157267 to 105158562 1295 CpG island CpG island 14520
Tssr38147 4 105157339 to 105157354 15 + TSS region transcription start site region 38147
Plpp3 4 105157347 to 105232764 75417 + protein coding gene phospholipid phosphatase 3
Tssr38148 4 105157357 to 105157374 17 + TSS region transcription start site region 38148
Tssr38149 4 105157415 to 105157426 11 + TSS region transcription start site region 38149
Tssr38150 4 105157428 to 105157463 35 + TSS region transcription start site region 38150
Tssr38151 4 105157475 to 105157480 5 + TSS region transcription start site region 38151
Tssr38152 4 105157490 to 105157508 18 + TSS region transcription start site region 38152
Tssr38153 4 105157593 to 105157604 11 + TSS region transcription start site region 38153
Tssr38154 4 105157628 to 105157635 7 + TSS region transcription start site region 38154
Tssr1250 4 105165870 to 105165875 5 + TSS region transcription start site region 1250
Tssr38155 4 105170538 to 105170544 6 + TSS region transcription start site region 38155
Tssr38156 4 105172191 to 105172195 4 + TSS region transcription start site region 38156
Tssr38157 4 105193116 to 105193120 4 + TSS region transcription start site region 38157
6030451C04Rik 4 105200735 to 105201912 1177 unclassified gene RIKEN cDNA 6030451C04 gene
Tssr38158 4 105224303 to 105224315 12 + TSS region transcription start site region 38158
Cpgi14521 4 105245872 to 105246027 155 CpG island CpG island 14521
Tssr38159 4 105257099 to 105257107 8 + TSS region transcription start site region 38159
Tssr38160 4 105258537 to 105258559 22 + TSS region transcription start site region 38160
Tssr38161 4 105258614 to 105258622 8 + TSS region transcription start site region 38161
Tssr38162 4 105261349 to 105261354 5 + TSS region transcription start site region 38162
Tssr38163 4 105267452 to 105267462 10 + TSS region transcription start site region 38163
Tssr38164 4 105267508 to 105267526 18 + TSS region transcription start site region 38164
Tssr42621 4 105268446 to 105268474 28 - TSS region transcription start site region 42621
D4Mit306 4 105299678 to 105299798 120 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 306
Ath8 4 105299798 to 45658442 -59641356 QTL atherosclerosis 8
Gm40217 4 105310378 to 105319147 8769 - lncRNA gene predicted gene, 40217
D4Ertd31e 4 105346009 to 105346222 213 DNA segment DNA segment, Chr 4, ERATO Doi 31, expressed
Gm12722 4 105374454 to 105374946 492 - pseudogene predicted gene 12722
Gm12723 4 105511232 to 105511682 450 + pseudogene predicted gene 12723
Tssr38165 4 105578295 to 105578302 7 + TSS region transcription start site region 38165
Gm12726 4 105578340 to 105578940 600 + pseudogene predicted gene 12726
Tssr38166 4 105718906 to 105718928 22 + TSS region transcription start site region 38166
Tssr38167 4 105794173 to 105794181 8 + TSS region transcription start site region 38167
Gm12728 4 105794178 to 105794909 731 + pseudogene predicted gene 12728
Gm29922 4 105841215 to 105845708 4493 - lncRNA gene predicted gene, 29922
D4Mit168 4 105944542 to 105944663 121 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 168
Pabr2 4 105944663 to 46332646 -59612017 QTL plasma apolipoprotein B (human) regulator 2
Gm24363 4 105975575 to 105975885 310 - unclassified non-coding RNA gene predicted gene, 24363
Pwgrq4 4 105978113 to 141706527 35728414 QTL pre-weaning growth rate QTL 4
Pwbwq4 4 105978113 to 141706527 35728414 QTL pre-weaning body weight QTL 4
Pwbwq8 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 8
Pwbwq9 4 105978113 to 141706527 35728414 QTL post-weaning body weight QTL 9
Gm30266 4 106037315 to 106048796 11481 - lncRNA gene predicted gene, 30266
Gm30199 4 106053995 to 106057803 3808 - lncRNA gene predicted gene, 30199
Gm12729 4 106088714 to 106105068 16354 - lincRNA gene predicted gene 12729
Gm12727 4 106098924 to 106099282 358 + pseudogene predicted gene 12727
Gm26047 4 106118968 to 106119080 112 - snoRNA gene predicted gene, 26047
Gm30126 4 106124248 to 106127182 2934 + lncRNA gene predicted gene, 30126
Gm30047 4 106126251 to 106145839 19588 - lncRNA gene predicted gene, 30047
Hspd1-ps4 4 106136111 to 106137778 1667 - pseudogene heat shock protein 1 (chaperonin), pseudogene 4
Tssr42622 4 106145790 to 106145833 43 - TSS region transcription start site region 42622
Tssr42623 4 106167847 to 106167848 1 - TSS region transcription start site region 42623
Gm12724 4 106241216 to 106290026 48810 + lncRNA gene predicted gene 12724
Gm12731 4 106257031 to 106257298 267 + pseudogene predicted gene 12731
Gm12730 4 106291269 to 106292255 986 + lincRNA gene predicted gene 12730
Gm37253 4 106293352 to 106294393 1041 - unclassified gene predicted gene, 37253
Tssr38168 4 106313318 to 106313329 11 + TSS region transcription start site region 38168
Gm30429 4 106314641 to 106316152 1511 - lncRNA gene predicted gene, 30429
Cpgi14522 4 106315471 to 106317198 1727 CpG island CpG island 14522
Tssr38169 4 106315996 to 106316046 50 + TSS region transcription start site region 38169
Tssr38170 4 106316049 to 106316070 21 + TSS region transcription start site region 38170
Tssr38171 4 106316077 to 106316119 42 + TSS region transcription start site region 38171
Tssr38172 4 106316122 to 106316139 17 + TSS region transcription start site region 38172
Tssr42624 4 106316139 to 106316201 62 - TSS region transcription start site region 42624
Tssr38173 4 106316187 to 106316243 56 + TSS region transcription start site region 38173
Tssr42625 4 106316212 to 106316223 11 - TSS region transcription start site region 42625
Usp24 4 106316213 to 106441322 125109 + protein coding gene ubiquitin specific peptidase 24
Tssr42626 4 106316242 to 106316260 18 - TSS region transcription start site region 42626
Tssr38174 4 106316301 to 106316328 27 + TSS region transcription start site region 38174
Gm40218 4 106324430 to 106326355 1925 + lncRNA gene predicted gene, 40218
Pcsk9 4 106442334 to 106464325 21991 - protein coding gene proprotein convertase subtilisin/kexin type 9
Cpgi14523 4 106463503 to 106464499 996 CpG island CpG island 14523
Tssr42627 4 106464077 to 106464120 43 - TSS region transcription start site region 42627
Tssr42628 4 106464167 to 106464181 14 - TSS region transcription start site region 42628
Tssr38175 4 106464228 to 106464232 4 + TSS region transcription start site region 38175
Tssr1251 4 106464453 to 106464466 13 + TSS region transcription start site region 1251
Gm30487 4 106464629 to 106477388 12759 + lncRNA gene predicted gene, 30487
Bsnd 4 106483456 to 106492243 8787 - protein coding gene barttin CLCNK type accessory beta subunit
Tssr42629 4 106492187 to 106492200 13 - TSS region transcription start site region 42629
Tssr42630 4 106492223 to 106492251 28 - TSS region transcription start site region 42630
Tssr42631 4 106492306 to 106492340 34 - TSS region transcription start site region 42631
Tmem61 4 106498816 to 106506335 7519 - lincRNA gene transmembrane protein 61
2700068H02Rik 4 106554669 to 106557897 3228 - antisense lncRNA gene RIKEN cDNA 2700068H02 gene
Cpgi14524 4 106560412 to 106561731 1319 CpG island CpG island 14524
Tssr38176 4 106561027 to 106561038 11 + TSS region transcription start site region 38176
Dhcr24 4 106561038 to 106589113 28075 + protein coding gene 24-dehydrocholesterol reductase
Tssr38177 4 106561045 to 106561065 20 + TSS region transcription start site region 38177
Tssr38178 4 106561074 to 106561099 25 + TSS region transcription start site region 38178
Cpgi14525 4 106562013 to 106562243 230 CpG island CpG island 14525
Tssr38179 4 106578259 to 106578273 14 + TSS region transcription start site region 38179
Tssr38180 4 106581789 to 106581801 12 + TSS region transcription start site region 38180
Gm12744 4 106587097 to 106589108 2011 - antisense lncRNA gene predicted gene 12744
Tssr38181 4 106587272 to 106587296 24 + TSS region transcription start site region 38181
Tssr38182 4 106587462 to 106587482 20 + TSS region transcription start site region 38182
Tssr38183 4 106588968 to 106588977 9 + TSS region transcription start site region 38183
Lexm 4 106590909 to 106617241 26332 - protein coding gene lymphocyte expansion molecule
Tssr38184 4 106615871 to 106615904 33 + TSS region transcription start site region 38184
Cpgi14526 4 106617106 to 106617441 335 CpG island CpG island 14526
Tssr42632 4 106617214 to 106617226 12 - TSS region transcription start site region 42632
Tssr42633 4 106617232 to 106617240 8 - TSS region transcription start site region 42633
Cpgi14527 4 106622383 to 106623233 850 CpG island CpG island 14527
Tssr38185 4 106622424 to 106622477 53 + TSS region transcription start site region 38185
Ttc22 4 106622449 to 106640196 17747 + protein coding gene tetratricopeptide repeat domain 22
Tssr38186 4 106622486 to 106622511 25 + TSS region transcription start site region 38186
Tssr38187 4 106622528 to 106622542 14 + TSS region transcription start site region 38187
Cpgi14528 4 106638948 to 106639456 508 CpG island CpG island 14528
Cpgi14529 4 106650885 to 106651573 688 CpG island CpG island 14529