Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:103274500-105089844

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4921539E11Rik 4 103230445 to 103290863 60418 - protein coding gene RIKEN cDNA 4921539E11 gene
Tssr42608 4 103290853 to 103290870 17 - TSS region transcription start site region 42608
Tssr1249 4 103290898 to 103290906 8 - TSS region transcription start site region 1249
4930456L15Rik 4 103290959 to 103311832 20873 + lincRNA gene RIKEN cDNA 4930456L15 gene
Gm36523 4 103302836 to 103313555 10719 - lncRNA gene predicted gene, 36523
Cpgi14514 4 103313452 to 103314301 849 CpG island CpG island 14514
Tssr38104 4 103313806 to 103313820 14 + TSS region transcription start site region 38104
Oma1 4 103313812 to 103371868 58056 + protein coding gene OMA1 zinc metallopeptidase
Tssr38105 4 103313827 to 103313856 29 + TSS region transcription start site region 38105
Tssr38106 4 103314493 to 103314504 11 + TSS region transcription start site region 38106
Tssr38107 4 103324907 to 103324953 46 + TSS region transcription start site region 38107
Tssr38108 4 103339855 to 103339864 9 + TSS region transcription start site region 38108
Tssr38109 4 103348703 to 103348708 5 + TSS region transcription start site region 38109
4931409D07Rik 4 103381299 to 103382462 1163 unclassified gene RIKEN cDNA 4931409D07 gene
Gm12718 4 103382500 to 103492040 109540 + lincRNA gene predicted gene 12718
Gm23064 4 103471859 to 103471959 100 + miRNA gene predicted gene, 23064
Gm12720 4 103538845 to 103550682 11837 - unclassified non-coding RNA gene predicted gene 12720
Gm12716 4 103543374 to 103544727 1353 - pseudogene predicted gene 12716
Cpgi14515 4 103563139 to 103563404 265 CpG island CpG island 14515
Tssr38110 4 103563323 to 103563331 8 + TSS region transcription start site region 38110
Gm12715 4 103563402 to 103564529 1127 + pseudogene predicted gene 12715
Tssr38111 4 103563527 to 103563549 22 + TSS region transcription start site region 38111
Gm22801 4 103564203 to 103564286 83 + miRNA gene predicted gene, 22801
Gm25877 4 103586272 to 103586400 128 - snoRNA gene predicted gene, 25877
Gm36604 4 103610421 to 103619145 8724 - lncRNA gene predicted gene, 36604
Tssr38112 4 103619225 to 103619244 19 + TSS region transcription start site region 38112
Cpgi14516 4 103619342 to 103620341 999 CpG island CpG island 14516
Tssr38113 4 103619487 to 103619520 33 + TSS region transcription start site region 38113
Tssr38114 4 103619521 to 103619553 32 + TSS region transcription start site region 38114
Dab1 4 103619546 to 104744844 1125298 + protein coding gene disabled 1
Tssr38115 4 103619580 to 103619592 12 + TSS region transcription start site region 38115
Tssr38116 4 103676806 to 103676811 5 + TSS region transcription start site region 38116
Tssr38117 4 103685760 to 103685765 5 + TSS region transcription start site region 38117
2900034C19Rik 4 103711658 to 103712898 1240 unclassified gene RIKEN cDNA 2900034C19 gene
Tssr38118 4 103804862 to 103804864 2 + TSS region transcription start site region 38118
Tssr38119 4 103851432 to 103851448 16 + TSS region transcription start site region 38119
D4Mit331 4 103903196 to 103903321 125 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 331
Gm12719 4 103939301 to 103939541 240 - pseudogene predicted gene 12719
Gm12717 4 103941323 to 103942120 797 + pseudogene predicted gene 12717
Tssr38120 4 103978863 to 103978865 2 + TSS region transcription start site region 38120
Gm36661 4 103990972 to 104028719 37747 - lncRNA gene predicted gene, 36661
Tssr38121 4 104175154 to 104175188 34 + TSS region transcription start site region 38121
Tssr38122 4 104232959 to 104232966 7 + TSS region transcription start site region 38122
Tssr38123 4 104344075 to 104344111 36 + TSS region transcription start site region 38123
Cpgi14517 4 104366630 to 104368431 1801 CpG island CpG island 14517
Tssr38124 4 104367330 to 104367360 30 + TSS region transcription start site region 38124
Tssr38125 4 104367549 to 104367592 43 + TSS region transcription start site region 38125
Tssr38126 4 104367593 to 104367624 31 + TSS region transcription start site region 38126
Tssr38127 4 104367628 to 104367633 5 + TSS region transcription start site region 38127
Tssr38128 4 104367639 to 104367642 3 + TSS region transcription start site region 38128
Cpgi14518 4 104368777 to 104369001 224 CpG island CpG island 14518
Tssr38129 4 104389879 to 104389882 3 + TSS region transcription start site region 38129
Tssr38130 4 104463974 to 104463977 3 + TSS region transcription start site region 38130
Tssr38131 4 104463983 to 104464013 30 + TSS region transcription start site region 38131
Tssr38132 4 104464021 to 104464031 10 + TSS region transcription start site region 38132
Tssr38133 4 104486537 to 104486539 2 + TSS region transcription start site region 38133
AY512949 4 104528400 to 104532252 3852 unclassified gene cDNA sequence AY512949
D4Mit46.3 4 104614597 to 104614712 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 46.3
Tssr42609 4 104625458 to 104625479 21 - TSS region transcription start site region 42609
Tssr38134 4 104741618 to 104741636 18 + TSS region transcription start site region 38134
Tssr38135 4 104741702 to 104741713 11 + TSS region transcription start site region 38135
Tssr38136 4 104766308 to 104766331 23 + TSS region transcription start site region 38136
C8b 4 104766317 to 104804548 38231 + protein coding gene complement component 8, beta polypeptide
Tssr38137 4 104766334 to 104766389 55 + TSS region transcription start site region 38137
Tssr38138 4 104774007 to 104774015 8 + TSS region transcription start site region 38138
Tssr38139 4 104775857 to 104775878 21 + TSS region transcription start site region 38139
Tssr38140 4 104799198 to 104799219 21 + TSS region transcription start site region 38140
C8a 4 104815679 to 104876398 60719 - protein coding gene complement component 8, alpha polypeptide
Tssr42610 4 104816415 to 104816424 9 - TSS region transcription start site region 42610
Tssr42611 4 104853775 to 104853788 13 - TSS region transcription start site region 42611
Tssr38141 4 104856439 to 104856466 27 + TSS region transcription start site region 38141
Gm17662 4 104857329 to 104859137 1808 + protein coding gene predicted gene, 17662
Tssr42612 4 104858731 to 104858754 23 - TSS region transcription start site region 42612
Tssr42613 4 104876388 to 104876405 17 - TSS region transcription start site region 42613
Tssr42614 4 104876430 to 104876439 9 - TSS region transcription start site region 42614
Tssr42615 4 104876441 to 104876463 22 - TSS region transcription start site region 42615
Gm40216 4 104887207 to 104890083 2876 - lncRNA gene predicted gene, 40216
Fyb2 4 104913456 to 105016863 103407 + protein coding gene FYN binding protein 2
Tssr38142 4 104913513 to 104913524 11 + TSS region transcription start site region 38142
Tssr38143 4 104913554 to 104913579 25 + TSS region transcription start site region 38143
D4Mit75 4 104920618 to 104920774 156 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 75
Tssr38144 4 104936273 to 104936278 5 + TSS region transcription start site region 38144
Tssr38145 4 104936292 to 104936306 14 + TSS region transcription start site region 38145
Gm12721 4 104969862 to 104970129 267 - pseudogene predicted gene 12721
Gm36835 4 104971196 to 104972639 1443 - lncRNA gene predicted gene, 36835
Prkaa2 4 105029874 to 105109890 80016 - protein coding gene protein kinase, AMP-activated, alpha 2 catalytic subunit