Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:102648812-104036868

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr38067 4 102698285 to 102698291 6 + TSS region transcription start site region 38067
Gm24869 4 102736812 to 102736939 127 + snoRNA gene predicted gene, 24869
Tssr38068 4 102741287 to 102741298 11 + TSS region transcription start site region 38068
Cpgi14509 4 102759103 to 102759565 462 CpG island CpG island 14509
Sgip1 4 102759162 to 102977426 218264 + protein coding gene SH3-domain GRB2-like (endophilin) interacting protein 1
Cpgi14510 4 102760044 to 102760486 442 CpG island CpG island 14510
Tssr38069 4 102760164 to 102760184 20 + TSS region transcription start site region 38069
Tssr38070 4 102760271 to 102760278 7 + TSS region transcription start site region 38070
Tssr38071 4 102760294 to 102760375 81 + TSS region transcription start site region 38071
Tssr38072 4 102825448 to 102825451 3 + TSS region transcription start site region 38072
Tssr38073 4 102833677 to 102833679 2 + TSS region transcription start site region 38073
Tssr42569 4 102859352 to 102859392 40 - TSS region transcription start site region 42569
Tssr42570 4 102921771 to 102921780 9 - TSS region transcription start site region 42570
Tssr42571 4 102921783 to 102921790 7 - TSS region transcription start site region 42571
Papg1 4 102923970 to 102924082 112 QTL pulmonary adenoma progression 1
D4Mit219 4 102923970 to 102924082 112 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 219
Bbaa23 4 102923970 to 102924082 112 QTL B.burgdorferi-associated arthritis 23
Tssr1245 4 102955811 to 102955818 7 + TSS region transcription start site region 1245
Tssr42572 4 102959665 to 102959673 8 - TSS region transcription start site region 42572
Gm12709 4 102967266 to 102989755 22489 - antisense lncRNA gene predicted gene 12709
Tssr38074 4 102969073 to 102969076 3 + TSS region transcription start site region 38074
Tssr1246 4 102976124 to 102976154 30 + TSS region transcription start site region 1246
Tctex1d1 4 102978606 to 103005594 26988 + protein coding gene Tctex1 domain containing 1
Tssr38075 4 102978691 to 102978713 22 + TSS region transcription start site region 38075
Tssr42573 4 102984208 to 102984219 11 - TSS region transcription start site region 42573
Tssr38076 4 102986343 to 102986395 52 + TSS region transcription start site region 38076
Tssr1247 4 102986400 to 102986409 9 + TSS region transcription start site region 1247
Tssr42574 4 102989471 to 102989477 6 - TSS region transcription start site region 42574
Tssr42575 4 102989535 to 102989545 10 - TSS region transcription start site region 42575
Tssr38077 4 102989594 to 102989632 38 + TSS region transcription start site region 38077
Tssr42576 4 102989630 to 102989667 37 - TSS region transcription start site region 42576
Tssr38078 4 102991247 to 102991277 30 + TSS region transcription start site region 38078
Tssr38079 4 102991288 to 102991295 7 + TSS region transcription start site region 38079
Tssr38080 4 102991815 to 102991837 22 + TSS region transcription start site region 38080
Tssr38081 4 102991913 to 102991926 13 + TSS region transcription start site region 38081
BB031773 4 103004106 to 103011965 7859 - antisense lncRNA gene expressed sequence BB031773
Tssr42577 4 103011957 to 103011970 13 - TSS region transcription start site region 42577
Tssr42578 4 103012001 to 103012011 10 - TSS region transcription start site region 42578
Tssr42579 4 103012153 to 103012165 12 - TSS region transcription start site region 42579
Insl5 4 103017872 to 103026842 8970 - protein coding gene insulin-like 5
Tssr42580 4 103026649 to 103026667 18 - TSS region transcription start site region 42580
Tssr42581 4 103026709 to 103026752 43 - TSS region transcription start site region 42581
Wdr78 4 103038065 to 103114555 76490 - protein coding gene WD repeat domain 78
Tssr42582 4 103077649 to 103077667 18 - TSS region transcription start site region 42582
D4Mit118 4 103094710 to 103094901 191 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 118
Gm12710 4 103103527 to 103103742 215 + pseudogene predicted gene 12710
Cpgi14511 4 103113897 to 103115180 1283 CpG island CpG island 14511
Tssr42583 4 103114210 to 103114221 11 - TSS region transcription start site region 42583
Tssr42584 4 103114222 to 103114233 11 - TSS region transcription start site region 42584
Tssr42585 4 103114238 to 103114298 60 - TSS region transcription start site region 42585
Tssr42586 4 103114305 to 103114314 9 - TSS region transcription start site region 42586
Tssr42587 4 103114316 to 103114348 32 - TSS region transcription start site region 42587
Tssr42588 4 103114357 to 103114366 9 - TSS region transcription start site region 42588
Tssr38082 4 103114385 to 103114394 9 + TSS region transcription start site region 38082
Mier1 4 103114390 to 103165754 51364 + protein coding gene MEIR1 treanscription regulator
Tssr38083 4 103114402 to 103114445 43 + TSS region transcription start site region 38083
Tssr38084 4 103114462 to 103114475 13 + TSS region transcription start site region 38084
Tssr42589 4 103114562 to 103114578 16 - TSS region transcription start site region 42589
Tssr38085 4 103114712 to 103114759 47 + TSS region transcription start site region 38085
Tssr38086 4 103114776 to 103114792 16 + TSS region transcription start site region 38086
Tssr42590 4 103114812 to 103114836 24 - TSS region transcription start site region 42590
Tssr38087 4 103114916 to 103114983 67 + TSS region transcription start site region 38087
Tssr38088 4 103117219 to 103117251 32 + TSS region transcription start site region 38088
Cpgi14512 4 103118974 to 103120029 1055 CpG island CpG island 14512
Tssr38089 4 103119275 to 103119293 18 + TSS region transcription start site region 38089
Tssr38090 4 103119371 to 103119403 32 + TSS region transcription start site region 38090
Tssr38091 4 103119404 to 103119416 12 + TSS region transcription start site region 38091
Tssr38092 4 103119434 to 103119447 13 + TSS region transcription start site region 38092
Tssr38093 4 103119461 to 103119464 3 + TSS region transcription start site region 38093
Tssr38094 4 103119467 to 103119486 19 + TSS region transcription start site region 38094
Tssr1248 4 103119936 to 103119943 7 + TSS region transcription start site region 1248
Tssr42591 4 103120170 to 103120177 7 - TSS region transcription start site region 42591
Tssr42592 4 103120207 to 103120224 17 - TSS region transcription start site region 42592
Tssr38095 4 103120270 to 103120295 25 + TSS region transcription start site region 38095
Tssr38096 4 103123587 to 103123590 3 + TSS region transcription start site region 38096
Tssr38097 4 103133529 to 103133534 5 + TSS region transcription start site region 38097
Tssr38098 4 103134842 to 103134850 8 + TSS region transcription start site region 38098
D4Mit167 4 103135042 to 103135191 149 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 167
Tssr38099 4 103143052 to 103143071 19 + TSS region transcription start site region 38099
Tssr38100 4 103151031 to 103151072 41 + TSS region transcription start site region 38100
Tssr38101 4 103164641 to 103164645 4 + TSS region transcription start site region 38101
Slc35d1 4 103170649 to 103215164 44515 - protein coding gene solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
Tssr38102 4 103170952 to 103170980 28 + TSS region transcription start site region 38102
Tssr42593 4 103171786 to 103171791 5 - TSS region transcription start site region 42593
Tssr42594 4 103173353 to 103173364 11 - TSS region transcription start site region 42594
Tssr42595 4 103173368 to 103173386 18 - TSS region transcription start site region 42595
Tssr42596 4 103173409 to 103173417 8 - TSS region transcription start site region 42596
Tssr42597 4 103173444 to 103173458 14 - TSS region transcription start site region 42597
Tssr42598 4 103173460 to 103173465 5 - TSS region transcription start site region 42598
Tssr42599 4 103173484 to 103173495 11 - TSS region transcription start site region 42599
Tssr42600 4 103173497 to 103173513 16 - TSS region transcription start site region 42600
Tssr42601 4 103173589 to 103173600 11 - TSS region transcription start site region 42601
Tssr42602 4 103173621 to 103173634 13 - TSS region transcription start site region 42602
Cpgi14513 4 103214129 to 103215604 1475 CpG island CpG island 14513
Tssr42603 4 103214791 to 103214818 27 - TSS region transcription start site region 42603
Tssr38103 4 103214843 to 103214865 22 + TSS region transcription start site region 38103
Tssr42604 4 103214845 to 103214856 11 - TSS region transcription start site region 42604
Gm46864 4 103214943 to 103223117 8174 + lncRNA gene predicted gene, 46864
Tssr42605 4 103215136 to 103215141 5 - TSS region transcription start site region 42605
Tssr42606 4 103215147 to 103215201 54 - TSS region transcription start site region 42606
Tssr42607 4 103215339 to 103215389 50 - TSS region transcription start site region 42607
Gm44037 4 103217702 to 103219592 1890 + lincRNA gene predicted gene, 44037
4921539E11Rik 4 103230445 to 103290863 60418 - protein coding gene RIKEN cDNA 4921539E11 gene
Tssr42608 4 103290853 to 103290870 17 - TSS region transcription start site region 42608
Tssr1249 4 103290898 to 103290906 8 - TSS region transcription start site region 1249
4930456L15Rik 4 103290959 to 103311832 20873 + lincRNA gene RIKEN cDNA 4930456L15 gene
Gm36523 4 103302836 to 103313555 10719 - lncRNA gene predicted gene, 36523
Cpgi14514 4 103313452 to 103314301 849 CpG island CpG island 14514
Tssr38104 4 103313806 to 103313820 14 + TSS region transcription start site region 38104
Oma1 4 103313812 to 103371868 58056 + protein coding gene OMA1 zinc metallopeptidase
Tssr38105 4 103313827 to 103313856 29 + TSS region transcription start site region 38105
Tssr38106 4 103314493 to 103314504 11 + TSS region transcription start site region 38106
Tssr38107 4 103324907 to 103324953 46 + TSS region transcription start site region 38107
Tssr38108 4 103339855 to 103339864 9 + TSS region transcription start site region 38108
Tssr38109 4 103348703 to 103348708 5 + TSS region transcription start site region 38109
4931409D07Rik 4 103381299 to 103382462 1163 unclassified gene RIKEN cDNA 4931409D07 gene
Gm12718 4 103382500 to 103492040 109540 + lincRNA gene predicted gene 12718
Gm23064 4 103471859 to 103471959 100 + miRNA gene predicted gene, 23064
Gm12720 4 103538845 to 103550682 11837 - unclassified non-coding RNA gene predicted gene 12720
Gm12716 4 103543374 to 103544727 1353 - pseudogene predicted gene 12716
Cpgi14515 4 103563139 to 103563404 265 CpG island CpG island 14515
Tssr38110 4 103563323 to 103563331 8 + TSS region transcription start site region 38110
Gm12715 4 103563402 to 103564529 1127 + pseudogene predicted gene 12715
Tssr38111 4 103563527 to 103563549 22 + TSS region transcription start site region 38111
Gm22801 4 103564203 to 103564286 83 + miRNA gene predicted gene, 22801
Gm25877 4 103586272 to 103586400 128 - snoRNA gene predicted gene, 25877
Gm36604 4 103610421 to 103619145 8724 - lncRNA gene predicted gene, 36604
Tssr38112 4 103619225 to 103619244 19 + TSS region transcription start site region 38112
Cpgi14516 4 103619342 to 103620341 999 CpG island CpG island 14516
Tssr38113 4 103619487 to 103619520 33 + TSS region transcription start site region 38113
Tssr38114 4 103619521 to 103619553 32 + TSS region transcription start site region 38114
Dab1 4 103619546 to 104744844 1125298 + protein coding gene disabled 1
Tssr38115 4 103619580 to 103619592 12 + TSS region transcription start site region 38115
Tssr38116 4 103676806 to 103676811 5 + TSS region transcription start site region 38116
Tssr38117 4 103685760 to 103685765 5 + TSS region transcription start site region 38117
2900034C19Rik 4 103711658 to 103712898 1240 unclassified gene RIKEN cDNA 2900034C19 gene
Tssr38118 4 103804862 to 103804864 2 + TSS region transcription start site region 38118
Tssr38119 4 103851432 to 103851448 16 + TSS region transcription start site region 38119
D4Mit331 4 103903196 to 103903321 125 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 331
Gm12719 4 103939301 to 103939541 240 - pseudogene predicted gene 12719
Gm12717 4 103941323 to 103942120 797 + pseudogene predicted gene 12717
Tssr38120 4 103978863 to 103978865 2 + TSS region transcription start site region 38120
Gm36661 4 103990972 to 104028719 37747 - lncRNA gene predicted gene, 36661